Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010920

Physical Location & Seq

Genomic Coordinates Reverse (-)

38453049 .. 38457640

Gene Structure 4592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0346800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGAGTCCACTGTTCATTCCGCGTTACTGTTCATTAGGATGCGAAAAGACGATTCTGCCCTCATTTGGATTTTGTTTTACGCCTCTGCCTCTGCCACTGACCTATTTTTGTTTTTTCGTTTTTGCTCTCTCTTTTCTTCCTAAACCACCTCCTCCTTCACTCTCTCAGACGACTACCTCCTCAACTGCGGCTCTTCCTCCAACGCCACCTTCTTCATCGGAGATTTCAATTCCAGGTCGGGTGTCAAAATTCACCTCAAACCCCAAAAATCACTCCTTTGAGTTTGGTGATACAGCCGTGGCCATCAATCTGTCCGATAGAAGCGTAGCATCAGGGTCAAGTGTCAACCCCATCAATCAGGCTTTGAGATACCGGGGAATCTCACTGTTTTTGCTTCTTTCATTGGTCAATCTGACCAGGTTGTTCCTATTTGGTATAGGTACCCTAAACACAGCAAGAGTTTTCACAACTGCTTCAAGCTATAGTTTAAGCATCAAGAAAATCGGAACTCACTTGTTTTCTTGGCTAGTGCAACTGCTTATGTATGTGTGTGAAAGTTTGAATCTTTGGGGGTTTTTGATTGAGATGAGCTCGAATTTTGAGATTGGAGATGGATGGGGGTTTAGTTGGTTTGATGCGAAAAAGTGTGCAACTGATTGTTTTGGCGCTGTTCCTTTGTCTGTTGTGTTGCACAATTTTATTCCCTTATTTTTATTCAGATTGAACAAAACTAATATGGGAAGGAAGGAGAGGACACCTTTGGAGTTTGAATCAGGAAAAGAGAAGAAAAAGCACAAGGAGAAAAGGAAGGAGAAAGCAAAGAAGGATGAACTTGAAAGAAATTCTTCCGTGCTTGAAGTCTGTGGGGACAAAATGGGCAAGGAAGTTGAGGGGCTGAAATATGACAAGACTGGTGGAAATCATATGAATAGTGGAGAAGAAGCCAATAAGAAAAAGAAAAGGAGGAGGGAAAAGGAGGGGAATGATATGGTAATAGATATGATTAATAAAAAGGAGCTCATAAATGATGGGGAGAAATCCGTTGGGAAAACTGTGGAGAAAGTTGACTCTACAGGTAGTGTAAAGAAGACACAAAAAATTCTTGAGGATGGAAAAGTAGGTGTGGCAACTGAGTATGGAGATGTTGCACAAATAAACAACAAGGGAGGAAATAAAAAGAAAAAAGAGAAGAAAGGGAAGAGGGAAAAAACGGGTGGTGAATTGGTACCGGATGTCACAAGTGATGGAATGGAGGCTGGAGTAGCAAGTAACCGTTTAGATGGGCATATCGTGGCTGAAAATATGGGCACTGGGAGCAGTGAAACGTGCATCAGAAACATGGAGGCTGTTGATGTAGATGGTGGGAAAACAAGGAAGAAGAAGGCCAAGGCAAACACCCTTGTTAATGGAGAAGATAGCAGCAGAAATGTGGAGGTTGTTAATGTAGAAGATGGTAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACATGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTTTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCGGAGAAACGTGGTATTGCGGAGATTTGCAATGAAGACAAGAAAAAGGCCAGGTCAAGTAAAGGCAGCTTAATAGCCCAAAAAAGCATTGGAGCTCCTGACAATTCTGAAAAATCGACCCCTAAAAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACCGTCTGATGGCCCAAACGATGAGCATGAAGACCTTGTAAGAGGTAAACGGTTTTCAGAAGAAGAAGACAAGATTGTGAAAGAGGCTGTTTTAAGATACATAGAGGAACATGCTTTAGGGGATGATGGCCTCAACATGGTTATGCGGTGTAAATCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGGGGCAGCCTTACCATGGAGGCCCTTTAAGAGTGTATATTATAGAGCCCATATTTTGTTTGAACGAGCCGAGAAACGTATTTGGACCCCGGAAGAGTACGAAGAGGTAAAGAAGTTCCATAAAGATCGGGGAGCTGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAACTGCCAAATCAGAAGAAAGGACGCTGGTCCCAAGAGGAGTACGAGACTTTATTTGATTTAGTGAACATGGATCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTGGGCACTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCACCATGGGCTCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

880

Amino Acids

99.34

Weight (kDa)

9.14

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	675 - 733	1.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62470 AT3G62540 AT5G14820
fragaria_vesca	FvH4_5g39420
malus_domestica	MD11G1315100.v1.1
prunus_persica	Prupe.8G271400_v2.0.a1 Prupe.8G271400_v2.0.a1
pyrus_communis	pycom03g23410 pycom11g27530
rosa_chinensis	RchiOBHm_Chr7g0241731
rosa_laevigata	RLG00000000549
rosa_multiflora	Rmu_co8405791.1_g000001 Rmu_sc0002268.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218720
rosa_rugosa	Rorug07G0346800
rosa_samantha	Rh7AG501200 Rh7BG472500 Rh7CG517500 Rh7DG486200
rosa_wichuraiana	Rw7G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2638
Acc65I	GGTACC	2 cut(s)	440, 1225
AccB1I	GGYRCC	2 cut(s)	440, 1225
AccII	CGCG	1 cut(s)	22
AciI	CCGC	4 cut(s)	20, 188, 1580, 1879
AclI	AACGTT	2 cut(s)	2303, 2581
AclWI	GGATC	1 cut(s)	2226
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	5 cut(s)	248, 595, 841, 1098, 2115
AcuI	CTGAAG	1 cut(s)	1917
AfaI	GTAC	4 cut(s)	442, 1227, 2039, 2189
AfiI	CCNNNNNNNGG	4 cut(s)	65, 1742, 1870, 1956
AflIII	ACRYGT	1 cut(s)	1486
AjnI	CCWGG	4 cut(s)	232, 416, 1610, 2482
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	9 cut(s)	480, 591, 1018, 1629, 1655, 2075, 2101, 2380, 2427
AluI	AGCT	9 cut(s)	480, 591, 1018, 1629, 1655, 2075, 2101, 2380, 2427
Alw21I	GWGCWC	3 cut(s)	593, 1020, 1657
Alw26I	GTCTC	1 cut(s)	2186
AlwI	GGATC	1 cut(s)	2226
AoxI	GGCC	8 cut(s)	300, 1383, 1470, 1608, 1744, 1861, 1961, 2480
ApeKI	GCWGC	6 cut(s)	1419, 1626, 1946, 2266, 2331, 2407
ApoI	RAATTY	5 cut(s)	248, 595, 841, 1098, 2115
AseI	ATTAAT	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	844
Asp718I	GGTACC	2 cut(s)	440, 1225
AspLEI	GCGC	2 cut(s)	668, 2139
AspS9I	GGNCC	4 cut(s)	1745, 1962, 2025, 2175
AsuC2I	CCSGG	2 cut(s)	374, 2030
AsuHPI	GGTGA	6 cut(s)	244, 299, 1229, 1725, 2352, 2525
AvaII	GGWCC	2 cut(s)	2025, 2175
BaeGI	GKGCMC	2 cut(s)	1310, 2312
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	440, 1225
BanII	GRGCYC	5 cut(s)	593, 1020, 1657, 1990, 2544
BbsI	GAAGAC	5 cut(s)	1094, 1602, 1720, 1770, 1806
Bbv12I	GWGCWC	3 cut(s)	593, 1020, 1657
BbvI	GCAGC	6 cut(s)	1431, 1638, 1958, 2253, 2343, 2394
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	4 cut(s)	234, 418, 1612, 2484
BcnI	CCSGG	2 cut(s)	374, 2030
BcoDI	GTCTC	1 cut(s)	2186
BfaI	CTAG	3 cut(s)	527, 2313, 2622
BfmI	CTRYAG	3 cut(s)	481, 1071, 2631
BfoI	RGCGCY	1 cut(s)	669
BfuAI	ACCTGC	1 cut(s)	2638
BisI	GCNGC	7 cut(s)	189, 1420, 1627, 1947, 2267, 2332, 2408
BlsI	GCNGC	7 cut(s)	190, 1421, 1628, 1948, 2268, 2333, 2409
Bme1390I	CCNGG	6 cut(s)	234, 374, 418, 1612, 2030, 2484
Bme18I	GGWCC	2 cut(s)	2025, 2175
BmgT120I	GGNCC	4 cut(s)	1745, 1962, 2025, 2175
BmiI	GGNNCC	4 cut(s)	442, 1227, 2027, 2177
BmrFI	CCNGG	6 cut(s)	234, 374, 418, 1612, 2030, 2484
BmrI	ACTGGG	1 cut(s)	1320
BmuI	ACTGGG	1 cut(s)	1320
BoxI	GACNNNNGTC	1 cut(s)	2173
BpiI	GAAGAC	5 cut(s)	1094, 1602, 1720, 1770, 1806
BplI	GAGNNNNNCTC	4 cut(s)	575, 607, 1715, 1747
BpmI	CTGGAG	2 cut(s)	1278, 2505
BpuEI	CTTGAG	3 cut(s)	1124, 2492, 2528
BpuMI	CCSGG	2 cut(s)	374, 2030
BsaJI	CCNNGG	6 cut(s)	297, 373, 1386, 1955, 2028, 2536
BsaWI	WCCGGW	1 cut(s)	1228
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 1742, 1870, 1956
Bse1I	ACTGG	2 cut(s)	916, 1315
Bse3DI	GCAATG	1 cut(s)	1597
BseBI	CCWGG	4 cut(s)	234, 418, 1612, 2484
BseDI	CCNNGG	6 cut(s)	297, 373, 1386, 1955, 2028, 2536
BseGI	GGATG	9 cut(s)	44, 620, 832, 1114, 1237, 1861, 2134, 2437, 2467
BseLI	CCNNNNNNNGG	4 cut(s)	65, 1742, 1870, 1956
BseMI	GCAATG	1 cut(s)	1597
BseMII	CTCAG	2 cut(s)	179, 1122
BseNI	ACTGG	2 cut(s)	916, 1315
BseRI	GAGGAG	4 cut(s)	141, 169, 979, 2198
BseSI	GKGCMC	2 cut(s)	1310, 2312
BseXI	GCAGC	6 cut(s)	1431, 1638, 1958, 2253, 2343, 2394
BseYI	CCCAGC	1 cut(s)	2283
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	8 cut(s)	302, 1385, 1472, 1610, 1746, 1863, 1963, 2482
BshNI	GGYRCC	2 cut(s)	440, 1225
BsiHKAI	GWGCWC	3 cut(s)	593, 1020, 1657
BsiSI	CCGG	3 cut(s)	373, 1229, 2030
BslFI	GGGAC	2 cut(s)	881, 2161
BslI	CCNNNNNNNGG	4 cut(s)	65, 1742, 1870, 1956
BsmAI	GTCTC	1 cut(s)	2186
BsmFI	GGGAC	2 cut(s)	881, 2161
BsnI	GGCC	8 cut(s)	302, 1385, 1472, 1610, 1746, 1863, 1963, 2482
Bsp1286I	GDGCHC	7 cut(s)	593, 1020, 1310, 1657, 1990, 2312, 2544
Bsp143I	GATC	3 cut(s)	2065, 2218, 2464
Bsp19I	CCATGG	2 cut(s)	1955, 2536
BspACI	CCGC	4 cut(s)	20, 188, 1580, 1879
BspANI	GGCC	8 cut(s)	302, 1385, 1472, 1610, 1746, 1863, 1963, 2482
BspCNI	CTCAG	2 cut(s)	178, 1123
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	4 cut(s)	442, 1227, 2027, 2177
BspMAI	CTGCAG	1 cut(s)	2635
BspMI	ACCTGC	1 cut(s)	2638
BspPI	GGATC	1 cut(s)	2226
BspQI	GCTCTTC	1 cut(s)	198
BspT107I	GGYRCC	2 cut(s)	440, 1225
BsrDI	GCAATG	1 cut(s)	1597
BsrI	ACTGG	2 cut(s)	916, 1315
BssECI	CCNNGG	6 cut(s)	297, 373, 1386, 1955, 2028, 2536
BssMI	GATC	3 cut(s)	2065, 2218, 2464
BssT1I	CCWWGG	3 cut(s)	1386, 1955, 2536
Bst2UI	CCWGG	4 cut(s)	234, 418, 1612, 2484
Bst4CI	ACNGT	7 cut(s)	12, 29, 387, 1054, 1274, 1737, 1785
Bst6I	CTCTTC	4 cut(s)	198, 1193, 2028, 2037
BstAPI	GCANNNNNTGC	1 cut(s)	2263
BstC8I	GCNNGC	2 cut(s)	2264, 2437
BstDEI	CTNAG	2 cut(s)	165, 1131
BstDSI	CCRYGG	3 cut(s)	297, 1955, 2536
BstEII	GGTNACC	1 cut(s)	2531
BstF5I	GGATG	9 cut(s)	44, 620, 832, 1114, 1237, 1861, 2134, 2437, 2467
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	2 cut(s)	668, 2139
BstKTI	GATC	3 cut(s)	2068, 2221, 2467
BstMAI	GTCTC	1 cut(s)	2186
BstMBI	GATC	3 cut(s)	2065, 2218, 2464
BstMWI	GCNNNNNNNGC	3 cut(s)	1262, 1314, 2263
BstNI	CCWGG	4 cut(s)	234, 418, 1612, 2484
BstNSI	RCATGY	3 cut(s)	1490, 1847, 2266
BstPAI	GACNNNNGTC	1 cut(s)	2173
BstPI	GGTNACC	1 cut(s)	2531
BstSCI	CCNGG	6 cut(s)	232, 372, 416, 1610, 2028, 2482
BstSFI	CTRYAG	3 cut(s)	481, 1071, 2631
BstSLI	GKGCMC	2 cut(s)	1310, 2312
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	6 cut(s)	1431, 1638, 1958, 2253, 2343, 2394
BstV2I	GAAGAC	5 cut(s)	1094, 1602, 1720, 1770, 1806
BstX2I	RGATCY	1 cut(s)	2218
BstYI	RGATCY	1 cut(s)	2218
BsuRI	GGCC	8 cut(s)	302, 1385, 1472, 1610, 1746, 1863, 1963, 2482
BtgI	CCRYGG	3 cut(s)	297, 1955, 2536
BtgZI	GCGATG	1 cut(s)	2518
BtsCI	GGATG	9 cut(s)	44, 620, 832, 1114, 1237, 1861, 2134, 2437, 2467
BtsI	GCAGTG	1 cut(s)	1324
BtsIMutI	CAGTG	6 cut(s)	8, 95, 383, 1308, 1324, 2302
BveI	ACCTGC	1 cut(s)	2638
Cac8I	GCNNGC	2 cut(s)	2264, 2437
CfoI	GCGC	2 cut(s)	668, 2139
Cfr13I	GGNCC	4 cut(s)	1745, 1962, 2025, 2175
CseI	GACGC	1 cut(s)	2178
CsiI	ACCWGGT	1 cut(s)	416
Csp6I	GTAC	4 cut(s)	441, 1226, 2038, 2188
CspCI	CAANNNNNGTGG	4 cut(s)	895, 930, 2363, 2398
CviQI	GTAC	4 cut(s)	441, 1226, 2038, 2188
DdeI	CTNAG	2 cut(s)	165, 1131
DpnI	GATC	3 cut(s)	2067, 2220, 2466
DpnII	GATC	3 cut(s)	2065, 2218, 2464
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	4 cut(s)	198, 1193, 2028, 2037
EarI	CTCTTC	4 cut(s)	198, 1193, 2028, 2037
Ecl136II	GAGCTC	3 cut(s)	591, 1018, 1655
Eco130I	CCWWGG	3 cut(s)	1386, 1955, 2536
Eco147I	AGGCCT	1 cut(s)	2482
Eco24I	GRGCYC	5 cut(s)	593, 1020, 1657, 1990, 2544
Eco47I	GGWCC	2 cut(s)	2025, 2175
Eco53kI	GAGCTC	3 cut(s)	591, 1018, 1655
Eco57I	CTGAAG	1 cut(s)	1917
Eco91I	GGTNACC	1 cut(s)	2531
EcoICRI	GAGCTC	3 cut(s)	591, 1018, 1655
EcoO109I	RGGNCCY	1 cut(s)	1962
EcoO65I	GGTNACC	1 cut(s)	2531
EcoRI	GAATTC	1 cut(s)	2115
EcoRII	CCWGG	4 cut(s)	232, 416, 1610, 2482
EcoT14I	CCWWGG	3 cut(s)	1386, 1955, 2536
EcoT22I	ATGCAT	1 cut(s)	2134
EcoT38I	GRGCYC	5 cut(s)	593, 1020, 1657, 1990, 2544
ErhI	CCWWGG	3 cut(s)	1386, 1955, 2536
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	2 cut(s)	881, 2161
FauNDI	CATATG	1 cut(s)	924
Fnu4HI	GCNGC	7 cut(s)	189, 1420, 1627, 1947, 2267, 2332, 2408
FokI	GGATG	9 cut(s)	51, 627, 839, 1121, 1244, 1868, 2141, 2444, 2474
FriOI	GRGCYC	5 cut(s)	593, 1020, 1657, 1990, 2544
Fsp4HI	GCNGC	7 cut(s)	189, 1420, 1627, 1947, 2267, 2332, 2408
FspBI	CTAG	3 cut(s)	527, 2313, 2622
GlaI	GCGC	2 cut(s)	667, 2138
GluI	GCNGC	7 cut(s)	189, 1420, 1627, 1947, 2267, 2332, 2408
GsaI	CCCAGC	1 cut(s)	2287
GsuI	CTGGAG	2 cut(s)	1278, 2505
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	8 cut(s)	302, 1385, 1472, 1610, 1746, 1863, 1963, 2482
HapII	CCGG	3 cut(s)	373, 1229, 2030
HgaI	GACGC	1 cut(s)	2178
HhaI	GCGC	2 cut(s)	668, 2139
Hin6I	GCGC	2 cut(s)	666, 2137
HinP1I	GCGC	2 cut(s)	666, 2137
HincII	GTYRAC	3 cut(s)	346, 1066, 2638
HindII	GTYRAC	3 cut(s)	346, 1066, 2638
HindIII	AAGCTT	1 cut(s)	2099
HinfI	GANTC	6 cut(s)	4, 52, 378, 562, 770, 1067
HpaII	CCGG	3 cut(s)	373, 1229, 2030
HphI	GGTGA	6 cut(s)	244, 299, 1229, 1725, 2352, 2525
Hpy166II	GTNNAC	7 cut(s)	8, 346, 1066, 1781, 2212, 2627, 2638
Hpy188III	TCNNGA	5 cut(s)	496, 774, 1103, 1658, 2555
Hpy8I	GTNNAC	7 cut(s)	8, 346, 1066, 1781, 2212, 2627, 2638
HpyCH4III	ACNGT	7 cut(s)	12, 29, 387, 1054, 1274, 1737, 1785
HpyCH4IV	ACGT	5 cut(s)	1325, 1570, 2017, 2303, 2581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1262, 1314, 2263
HpyF3I	CTNAG	2 cut(s)	165, 1131
HpySE526I	ACGT	5 cut(s)	1325, 1570, 2017, 2303, 2581
HspAI	GCGC	2 cut(s)	666, 2137
KpnI	GGTACC	2 cut(s)	444, 1229
Kzo9I	GATC	3 cut(s)	2065, 2218, 2464
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	5 cut(s)	1015, 1314, 1652, 1660, 2072
Lsp1109I	GCAGC	6 cut(s)	1431, 1638, 1958, 2253, 2343, 2394
MabI	ACCWGGT	1 cut(s)	416
MaeI	CTAG	3 cut(s)	527, 2313, 2622
MaeII	ACGT	5 cut(s)	1325, 1570, 2017, 2303, 2581
MaeIII	GTNAC	4 cut(s)	23, 1234, 1268, 2531
MalI	GATC	3 cut(s)	2067, 2220, 2466
MboI	GATC	3 cut(s)	2065, 2218, 2464
MflI	RGATCY	1 cut(s)	2218
MhlI	GDGCHC	7 cut(s)	593, 1020, 1310, 1657, 1990, 2312, 2544
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	13, 1061
MmeI	TCCRAC	3 cut(s)	224, 1542, 1910
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	2134
MroXI	GAANNNNTTC	1 cut(s)	844
MscI	TGGCCA	1 cut(s)	302
MslI	CAYNNNNRTG	2 cut(s)	37, 1874
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	3 cut(s)	373, 1229, 2030
MspR9I	CCNGG	6 cut(s)	234, 374, 418, 1612, 2030, 2484
MvaI	CCWGG	4 cut(s)	234, 418, 1612, 2484
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	1262, 1314, 2263
NciI	CCSGG	2 cut(s)	374, 2030
NcoI	CCATGG	2 cut(s)	1955, 2536
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	3 cut(s)	2065, 2218, 2464
NlaIV	GGNNCC	4 cut(s)	442, 1227, 2027, 2177
NmeAIII	GCCGAG	1 cut(s)	2035
NmuCI	GTSAC	2 cut(s)	1234, 2531
NsiI	ATGCAT	1 cut(s)	2134
NspI	RCATGY	3 cut(s)	1490, 1847, 2266
PaeI	GCATGC	1 cut(s)	2266
PceI	AGGCCT	1 cut(s)	2482
PciI	ACATGT	1 cut(s)	1486
PciSI	GCTCTTC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	4 cut(s)	52, 378, 562, 770
PkrI	GCNGC	7 cut(s)	190, 1421, 1628, 1948, 2268, 2333, 2409
PleI	GAGTC	2 cut(s)	12, 1061
PpsI	GAGTC	2 cut(s)	12, 1061
PscI	ACATGT	1 cut(s)	1486
PshAI	GACNNNNGTC	1 cut(s)	2173
PshBI	ATTAAT	1 cut(s)	1005
Psp124BI	GAGCTC	3 cut(s)	593, 1020, 1657
Psp1406I	AACGTT	2 cut(s)	2303, 2581
Psp6I	CCWGG	4 cut(s)	232, 416, 1610, 2482
PspEI	GGTNACC	1 cut(s)	2531
PspFI	CCCAGC	1 cut(s)	2283
PspGI	CCWGG	4 cut(s)	232, 416, 1610, 2482
PspN4I	GGNNCC	4 cut(s)	442, 1227, 2027, 2177
PspPI	GGNCC	4 cut(s)	1745, 1962, 2025, 2175
PstI	CTGCAG	1 cut(s)	2635
PsuI	RGATCY	1 cut(s)	2218
RsaI	GTAC	4 cut(s)	442, 1227, 2039, 2189
RsaNI	GTAC	4 cut(s)	441, 1226, 2038, 2188
RseI	CAYNNNNRTG	2 cut(s)	37, 1874
SacI	GAGCTC	3 cut(s)	593, 1020, 1657
SapI	GCTCTTC	1 cut(s)	198
SatI	GCNGC	7 cut(s)	189, 1420, 1627, 1947, 2267, 2332, 2408
Sau3AI	GATC	3 cut(s)	2065, 2218, 2464
Sau96I	GGNCC	4 cut(s)	1745, 1962, 2025, 2175
SchI	GAGTC	2 cut(s)	13, 1061
ScrFI	CCNGG	6 cut(s)	234, 374, 418, 1612, 2030, 2484
SduI	GDGCHC	7 cut(s)	593, 1020, 1310, 1657, 1990, 2312, 2544
SexAI	ACCWGGT	1 cut(s)	416
SfcI	CTRYAG	3 cut(s)	481, 1071, 2631
SinI	GGWCC	2 cut(s)	2025, 2175
SmiMI	CAYNNNNRTG	2 cut(s)	37, 1874
SmlI	CTYRAG	3 cut(s)	1103, 2471, 2543
SmoI	CTYRAG	3 cut(s)	1103, 2471, 2543
SphI	GCATGC	1 cut(s)	2266
SseBI	AGGCCT	1 cut(s)	2482
SsiI	CCGC	4 cut(s)	20, 188, 1580, 1879
SspI	AATATT	1 cut(s)	2278
SspMI	CTAG	3 cut(s)	527, 2313, 2622
SstI	GAGCTC	3 cut(s)	593, 1020, 1657
StuI	AGGCCT	1 cut(s)	2482
StyD4I	CCNGG	6 cut(s)	232, 372, 416, 1610, 2028, 2482
StyI	CCWWGG	3 cut(s)	1386, 1955, 2536
TaaI	ACNGT	7 cut(s)	12, 29, 387, 1054, 1274, 1737, 1785
TaiI	ACGT	5 cut(s)	1328, 1573, 2020, 2306, 2584
TaqI	TCGA	2 cut(s)	593, 1676
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	52, 378, 562, 770
TscAI	CASTG	6 cut(s)	15, 102, 390, 1315, 1324, 2302
TseFI	GTSAC	2 cut(s)	1234, 2531
TseI	GCWGC	6 cut(s)	1419, 1626, 1946, 2266, 2331, 2407
Tsp45I	GTSAC	2 cut(s)	1234, 2531
TspGWI	ACGGA	2 cut(s)	838, 1030
TspRI	CASTG	6 cut(s)	15, 102, 390, 1315, 1324, 2302
VpaK11BI	GGWCC	2 cut(s)	2025, 2175
VspI	ATTAAT	1 cut(s)	1005
XapI	RAATTY	5 cut(s)	248, 595, 841, 1098, 2115
XceI	RCATGY	3 cut(s)	1490, 1847, 2266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1646
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	3 cut(s)	527, 2313, 2622
Zsp2I	ATGCAT	1 cut(s)	2134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.