Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8405791.1

Orthogroup ID

OG0010920

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1215

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8405791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1214 bp

atgatgagtattttagggaagactagacagtttgagactatggtatcgctgctcgaagaaatgggagtcaaaggactgctgacaatggaaacttttgtgattgctttcaaagcttttgctgccgccaaagagaggaagaaagctgttggaatctttgagctcatgaagtattacaagttcaaatatggtgtcgataccgtgaattgcttgcttgatactctcggaagggcaaagctagggaaagaaatgcaagttctttttgacaagttgaaagggaggtttaccccaaatttacagacttatgcggtgctgcttgatgggtggtgcagggtgaggaatttaatggaggcggggagggtctggaacgagatgattgataaggggtttaagcctgatattgttacacataatatcatgcttggaggtttgttgaggagtcacaagaggtctgatgctatcaaattgtttgagatcatgaaagccaagggtccatcacctaatgttagaacctatagtattctgattcagaacttctgcaagcaaaaacagatgaaagaagcaatagacttatttgatgaaatgcgtgaatctgggtgccagcctagtgttgtggtttacacaagcttaatcacagggtttggaaatcagaacaagatggatatggttcatggattattgaaagcaatgaagcaagatggttgcactcctgatggggtgacctacaatgccttgatcaaattgatgacgaggcagagaatgccagatgatgcggtcaggatatacaagaagatgattcaaaatggagttgggccatcaatacacacctatgtcatgataatgaagtcttattttcagacaagaaattatgacatgggtcatgcggtatgggatgagatgattgagaagggttgctgcccagatgataacgcatatactgttctcattggaggtcttatatgccagggaagaacgggggaggcctgcaaatatctagaggaaatgatagagaaaggaatgaaaattcctcagcttgacttcaacaagtttgccgccgacttctccagagctgggaaacctgacatacttgtggagatggctcaaaagatgaaggtcgctggtaagtttgaactctccaatgtctttgctaggtgggctgaaatgacgaagaaaaagatgaaaggaagagatcctgacgaaactagtgatcaaggaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

404

Amino Acids

45.93

Weight (kDa)

9.2

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62470 AT3G62540 AT5G14820
fragaria_vesca	FvH4_5g39420
malus_domestica	MD11G1315100.v1.1
prunus_persica	Prupe.8G271400_v2.0.a1 Prupe.8G271400_v2.0.a1
pyrus_communis	pycom03g23410 pycom11g27530
rosa_chinensis	RchiOBHm_Chr7g0241731
rosa_laevigata	RLG00000000549
rosa_multiflora	Rmu_co8405791.1_g000001 Rmu_sc0002268.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218720
rosa_rugosa	Rorug07G0346800
rosa_samantha	Rh7AG501200 Rh7BG472500 Rh7CG517500 Rh7DG486200
rosa_wichuraiana	Rw7G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	594
AciI	CCGC	6 cut(s)	123, 305, 350, 770, 881, 1050
AclWI	GGATC	1 cut(s)	1181
AcsI	RAATTY	3 cut(s)	289, 337, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	132, 1068
AgsI	TTSAA	7 cut(s)	109, 181, 271, 679, 797, 1039, 1127
AhlI	ACTAGT	1 cut(s)	1199
AjnI	CCWGG	1 cut(s)	960
AluBI	AGCT	7 cut(s)	113, 143, 160, 235, 624, 1030, 1067
AluI	AGCT	7 cut(s)	113, 143, 160, 235, 624, 1030, 1067
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	1181
AoxI	GGCC	2 cut(s)	809, 978
ApeKI	GCWGC	4 cut(s)	49, 119, 310, 912
ApoI	RAATTY	3 cut(s)	289, 337, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspS9I	GGNCC	2 cut(s)	488, 809
AsuHPI	GGTGA	3 cut(s)	343, 486, 727
AvaII	GGWCC	1 cut(s)	488
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanI	GGYRCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	1026
BbvI	GCAGC	4 cut(s)	36, 106, 297, 899
BccI	CCATC	7 cut(s)	311, 499, 649, 689, 704, 820, 1087
BciT130I	CCWGG	1 cut(s)	962
BclI	TGATCA	2 cut(s)	732, 1204
BcoDI	GTCTC	1 cut(s)	29
BcuI	ACTAGT	1 cut(s)	1199
BfaI	CTAG	6 cut(s)	24, 236, 603, 992, 1146, 1200
BfmI	CTRYAG	1 cut(s)	511
BisI	GCNGC	6 cut(s)	50, 120, 123, 311, 913, 1050
BlsI	GCNGC	6 cut(s)	51, 121, 124, 312, 914, 1051
Bme1390I	CCNGG	1 cut(s)	962
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	488, 809
BmiI	GGNNCC	2 cut(s)	489, 596
BmrFI	CCNGG	1 cut(s)	962
BmsI	GCATC	2 cut(s)	442, 757
BoxI	GACNNNNGTC	1 cut(s)	873
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	1045
Bpu10I	CCTNAGC	1 cut(s)	1026
BsaJI	CCNNGG	2 cut(s)	483, 961
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 1068
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	1 cut(s)	962
BseDI	CCNNGG	2 cut(s)	483, 961
BseGI	GGATG	1 cut(s)	895
BseLI	CCNNNNNNNGG	2 cut(s)	132, 1068
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	1 cut(s)	1040
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	4 cut(s)	36, 106, 297, 899
BseYI	CCCAGC	1 cut(s)	1067
BsgI	GTGCAG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	811, 980
BshNI	GGYRCC	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	132, 1068
BsmAI	GTCTC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	2 cut(s)	811, 980
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	471, 732, 1186, 1204
BspACI	CCGC	6 cut(s)	123, 305, 350, 770, 881, 1050
BspANI	GGCC	2 cut(s)	811, 980
BspCNI	CTCAG	1 cut(s)	1039
BspHI	TCATGA	3 cut(s)	162, 474, 831
BspLI	GGNNCC	2 cut(s)	489, 596
BspPI	GGATC	1 cut(s)	1181
BspT107I	GGYRCC	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	690
BssECI	CCNNGG	2 cut(s)	483, 961
BssMI	GATC	4 cut(s)	471, 732, 1186, 1204
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	962
Bst4CI	ACNGT	3 cut(s)	30, 199, 937
Bst6I	CTCTTC	1 cut(s)	1177
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstC8I	GCNNGC	4 cut(s)	209, 539, 599, 982
BstDEI	CTNAG	1 cut(s)	1026
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	1 cut(s)	895
BstKTI	GATC	4 cut(s)	474, 735, 1189, 1207
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	471, 732, 1186, 1204
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 119, 757, 1151
BstNI	CCWGG	1 cut(s)	962
BstPAI	GACNNNNGTC	1 cut(s)	873
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	960
BstSFI	CTRYAG	1 cut(s)	511
BstV1I	GCAGC	4 cut(s)	36, 106, 297, 899
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	1186
BstYI	RGATCY	1 cut(s)	1186
BsuRI	GGCC	2 cut(s)	811, 980
BtsCI	GGATG	1 cut(s)	895
Cac8I	GCNNGC	4 cut(s)	209, 539, 599, 982
CciI	TCATGA	3 cut(s)	162, 474, 831
Cfr13I	GGNCC	2 cut(s)	488, 809
CviAII	CATG	7 cut(s)	163, 415, 475, 668, 832, 871, 878
DdeI	CTNAG	1 cut(s)	1026
DpnI	GATC	4 cut(s)	473, 734, 1188, 1206
DpnII	GATC	4 cut(s)	471, 732, 1186, 1204
Eam1104I	CTCTTC	1 cut(s)	1177
EarI	CTCTTC	1 cut(s)	1177
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	980
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	715
EcoICRI	GAGCTC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	960
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	7 cut(s)	166, 418, 478, 671, 835, 874, 881
FatI	CATG	7 cut(s)	162, 414, 474, 667, 831, 870, 877
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	2 cut(s)	732, 1204
Fnu4HI	GCNGC	6 cut(s)	50, 120, 123, 311, 913, 1050
FokI	GGATG	1 cut(s)	902
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	6 cut(s)	50, 120, 123, 311, 913, 1050
FspBI	CTAG	6 cut(s)	24, 236, 603, 992, 1146, 1200
GluI	GCNGC	6 cut(s)	50, 120, 123, 311, 913, 1050
GsaI	CCCAGC	1 cut(s)	1071
GsuI	CTGGAG	1 cut(s)	1045
HaeIII	GGCC	2 cut(s)	811, 980
Hin1II	CATG	7 cut(s)	166, 418, 478, 671, 835, 874, 881
HindIII	AAGCTT	2 cut(s)	111, 622
HinfI	GANTC	6 cut(s)	66, 150, 436, 523, 587, 793
HphI	GGTGA	3 cut(s)	343, 486, 727
Hpy166II	GTNNAC	2 cut(s)	282, 616
Hpy188I	TCNGA	6 cut(s)	224, 451, 522, 528, 648, 855
Hpy188III	TCNNGA	9 cut(s)	163, 361, 475, 707, 775, 832, 992, 1062, 1190
Hpy8I	GTNNAC	2 cut(s)	282, 616
HpyAV	CCTTC	3 cut(s)	219, 898, 1102
HpyCH4III	ACNGT	3 cut(s)	30, 199, 937
HpyCH4V	TGCA	5 cut(s)	250, 327, 537, 702, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 119, 757, 1151
HpyF3I	CTNAG	1 cut(s)	1026
Hsp92II	CATG	7 cut(s)	166, 418, 478, 671, 835, 874, 881
Ksp22I	TGATCA	2 cut(s)	732, 1204
Kzo9I	GATC	4 cut(s)	471, 732, 1186, 1204
Lsp1109I	GCAGC	4 cut(s)	36, 106, 297, 899
LweI	GCATC	2 cut(s)	442, 757
MaeI	CTAG	6 cut(s)	24, 236, 603, 992, 1146, 1200
MaeIII	GTNAC	3 cut(s)	400, 437, 715
MalI	GATC	4 cut(s)	473, 734, 1188, 1206
MboI	GATC	4 cut(s)	471, 732, 1186, 1204
MboII	GAAGA	7 cut(s)	31, 68, 148, 799, 978, 1177, 1194
MflI	RGATCY	1 cut(s)	1186
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	7 cut(s)	202, 289, 337, 461, 737, 862, 1020
MlyI	GAGTC	2 cut(s)	75, 445
MmeI	TCCRAC	1 cut(s)	127
MseI	TTAA	3 cut(s)	341, 387, 626
MslI	CAYNNNNRTG	3 cut(s)	825, 836, 1085
MspR9I	CCNGG	1 cut(s)	962
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	962
MwoI	GCNNNNNNNGC	4 cut(s)	110, 119, 757, 1151
NdeII	GATC	4 cut(s)	471, 732, 1186, 1204
NlaIII	CATG	7 cut(s)	166, 418, 478, 671, 835, 874, 881
NlaIV	GGNNCC	2 cut(s)	489, 596
NmuCI	GTSAC	2 cut(s)	437, 715
PagI	TCATGA	3 cut(s)	162, 474, 831
PceI	AGGCCT	1 cut(s)	980
PctI	GAATGC	1 cut(s)	762
PfeI	GAWTC	4 cut(s)	150, 523, 587, 793
PkrI	GCNGC	6 cut(s)	51, 121, 124, 312, 914, 1051
PleI	GAGTC	2 cut(s)	74, 444
PpsI	GAGTC	2 cut(s)	74, 444
PshAI	GACNNNNGTC	1 cut(s)	873
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	960
PspEI	GGTNACC	1 cut(s)	715
PspFI	CCCAGC	1 cut(s)	1067
PspGI	CCWGG	1 cut(s)	960
PspN4I	GGNNCC	2 cut(s)	489, 596
PspPI	GGNCC	2 cut(s)	488, 809
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
PsuI	RGATCY	1 cut(s)	1186
RseI	CAYNNNNRTG	3 cut(s)	825, 836, 1085
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	341, 387, 626
SatI	GCNGC	6 cut(s)	50, 120, 123, 311, 913, 1050
Sau3AI	GATC	4 cut(s)	471, 732, 1186, 1204
Sau96I	GGNCC	2 cut(s)	488, 809
SchI	GAGTC	2 cut(s)	75, 445
ScrFI	CCNGG	1 cut(s)	962
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	442, 757
SfcI	CTRYAG	1 cut(s)	511
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	3 cut(s)	825, 836, 1085
SpeI	ACTAGT	1 cut(s)	1199
Sse9I	AATT	7 cut(s)	202, 289, 337, 461, 737, 862, 1020
SseBI	AGGCCT	1 cut(s)	980
SsiI	CCGC	6 cut(s)	123, 305, 350, 770, 881, 1050
SspMI	CTAG	6 cut(s)	24, 236, 603, 992, 1146, 1200
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	980
StyD4I	CCNGG	1 cut(s)	960
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	30, 199, 937
TaqI	TCGA	2 cut(s)	54, 192
TasI	AATT	7 cut(s)	202, 289, 337, 461, 737, 862, 1020
TauI	GCSGC	2 cut(s)	125, 1052
TfiI	GAWTC	4 cut(s)	150, 523, 587, 793
Tru1I	TTAA	3 cut(s)	341, 387, 626
Tru9I	TTAA	3 cut(s)	341, 387, 626
TseFI	GTSAC	2 cut(s)	437, 715
TseI	GCWGC	4 cut(s)	49, 119, 310, 912
Tsp45I	GTSAC	2 cut(s)	437, 715
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	3 cut(s)	289, 337, 1020
XbaI	TCTAGA	1 cut(s)	991
XspI	CTAG	6 cut(s)	24, 236, 603, 992, 1146, 1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.