Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010920

Physical Location & Seq

Genomic Coordinates Reverse (-)

23237083 .. 23237885

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCCCTCTTTCTAATAAGATCATCCTCTTCCGCCCAAAGCCACCTCTTTTACTCTCAACCACACCCAGCAACACCGCTCTCAGATGTCTGCCTACGCCGCCGCTTCACCATCGAGCTATGCTCTTTCTATCAAGGACGAGAAAGACGTCGCCGAGGGCAAGTCTGCCTTCCTAGTAGTAGCTCTCTGCCCCTGCCTAGTTTTCTTCATTCTCCTCTTCATTGTTATCTCTATCATTCTCATTGTCAAATTCCATTTATTTTGCCATACCCCACTTCACTTTTTATTCTACAAGAAAAACTGCTAGCTAGACCTACTACAATCTCCAATTTTACAACTTCAATGGTTGGCATTGTATATTGTGATTGGATTATGGCGTTTCTAGTGCCACTGGTATGCAAGGTGATCGACGAATTGTTTGCTTTAGATTGGAACATGGAGGCGGTTCTTGATGAATGCGGTATCCATTTGTCCCATGATTTGGTTGCGGCGGTTTTGAAACGCTTCCAGCACGCTAGAAAACCCGCCCTTCAGTTTTTCTATTGGGCAGGGCAAAAGCCAGGGTTTTCCCATGATTCTAGGACTTGTAATTCAATTGTGAGCATTTTAGGAAAGACTAGGCAATTTGAGACCATGATGTCGCTGCTTGAAGAAATGGGAACGAAAGAGTTTTTCACGAAGGAAACATTTGTGATTGCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

235

Amino Acids

26.9

Weight (kDa)

8.58

Isoelectric Point (pI)

64.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62470 AT3G62540 AT5G14820
fragaria_vesca	FvH4_5g39420
malus_domestica	MD11G1315100.v1.1
prunus_persica	Prupe.8G271400_v2.0.a1 Prupe.8G271400_v2.0.a1
pyrus_communis	pycom03g23410 pycom11g27530
rosa_chinensis	RchiOBHm_Chr7g0241731
rosa_laevigata	RLG00000000549
rosa_multiflora	Rmu_co8405791.1_g000001 Rmu_sc0002268.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218720
rosa_rugosa	Rorug07G0346800
rosa_samantha	Rh7AG501200 Rh7BG472500 Rh7CG517500 Rh7DG486200
rosa_wichuraiana	Rw7G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	637
AatII	GACGTC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	9 cut(s)	33, 77, 100, 103, 443, 459, 488, 491, 525
AcsI	RAATTY	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	342, 499, 594, 650
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	3 cut(s)	118, 183, 308
AluI	AGCT	3 cut(s)	118, 183, 308
Alw26I	GTCTC	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	100, 415
AsuNHI	GCTAGC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	1 cut(s)	119
BcgI	CGANNNNNNTGC	4 cut(s)	388, 401, 422, 435
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	8 cut(s)	174, 198, 305, 309, 383, 516, 579, 618
BfuI	GTATCC	1 cut(s)	473
BisI	GCNGC	4 cut(s)	100, 103, 489, 644
BlsI	GCNGC	4 cut(s)	101, 104, 490, 645
Bme1390I	CCNGG	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	561
BmtI	GCTAGC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	154, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	154, 560
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	630
BseYI	CCCAGC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	20, 405
BspACI	CCGC	9 cut(s)	33, 77, 100, 103, 443, 459, 488, 491, 525
BspCNI	CTCAG	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	154, 560
BssMI	GATC	2 cut(s)	20, 405
BssNI	GRCGYC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	34, 222
BstACI	GRCGYC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	306, 513
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	23, 408
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	20, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstV1I	GCAGC	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	306, 513
CviAII	CATG	4 cut(s)	436, 476, 572, 634
CviJI	RGCY	5 cut(s)	42, 118, 183, 308, 559
CviKI_1	RGCY	5 cut(s)	42, 118, 183, 308, 559
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	2 cut(s)	22, 407
DpnII	GATC	2 cut(s)	20, 405
DrdI	GACNNNNNNGTC	1 cut(s)	637
DseDI	GACNNNNNNGTC	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	34, 222
EarI	CTCTTC	2 cut(s)	34, 222
EciI	GGCGGA	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	559
FaeI	CATG	4 cut(s)	439, 479, 575, 637
FaiI	YATR	9 cut(s)	121, 268, 358, 374, 397, 437, 477, 573, 635
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	4 cut(s)	435, 475, 571, 633
FauI	CCCGC	1 cut(s)	532
Fnu4HI	GCNGC	4 cut(s)	100, 103, 489, 644
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	4 cut(s)	100, 103, 489, 644
FspBI	CTAG	8 cut(s)	174, 198, 305, 309, 383, 516, 579, 618
GluI	GCNGC	4 cut(s)	100, 103, 489, 644
GsaI	CCCAGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	4 cut(s)	439, 479, 575, 637
HinfI	GANTC	1 cut(s)	575
HphI	GGTGA	2 cut(s)	100, 415
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	449, 676
Hpy99I	CGWCG	2 cut(s)	153, 413
HpyAV	CCTTC	3 cut(s)	179, 539, 673
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	148
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	439, 479, 575, 637
Kzo9I	GATC	2 cut(s)	20, 405
LpnPI	CCDG	7 cut(s)	81, 206, 377, 521, 534, 546, 573
Lsp1109I	GCAGC	1 cut(s)	630
MaeI	CTAG	8 cut(s)	174, 198, 305, 309, 383, 516, 579, 618
MaeII	ACGT	1 cut(s)	148
MalI	GATC	2 cut(s)	22, 407
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	20, 405
MboII	GAAGA	4 cut(s)	21, 197, 209, 662
MfeI	CAATTG	1 cut(s)	594
MluCI	AATT	6 cut(s)	249, 328, 413, 589, 594, 623
MnlI	CCTC	6 cut(s)	17, 37, 56, 149, 225, 433
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	2 cut(s)	20, 405
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	4 cut(s)	439, 479, 575, 637
NmeAIII	GCCGAG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	575
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	101, 104, 490, 645
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	559
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	703
SatI	GCNGC	4 cut(s)	100, 103, 489, 644
Sau3AI	GATC	2 cut(s)	20, 405
ScrFI	CCNGG	1 cut(s)	561
SetI	ASST	7 cut(s)	48, 120, 151, 185, 310, 316, 405
SmiMI	CAYNNNNRTG	1 cut(s)	394
Sse9I	AATT	6 cut(s)	249, 328, 413, 589, 594, 623
SsiI	CCGC	9 cut(s)	33, 77, 100, 103, 443, 459, 488, 491, 525
SspMI	CTAG	8 cut(s)	174, 198, 305, 309, 383, 516, 579, 618
StyD4I	CCNGG	1 cut(s)	559
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	114, 408
TasI	AATT	6 cut(s)	249, 328, 413, 589, 594, 623
TauI	GCSGC	3 cut(s)	102, 105, 491
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	643
TspDTI	ATGAA	3 cut(s)	197, 209, 468
TspRI	CASTG	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	481
XapI	RAATTY	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	8 cut(s)	174, 198, 305, 309, 383, 516, 579, 618
ZraI	GACGTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.