AT5G14940

Proton-dependent oligopeptide transport (POT) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012381
Physical Location & Seq
Reverse (-)
4831583 .. 4834532
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14940.1

Sequence Viewer

Length: 1659 bp
ATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGTAAATCTTGTGCTCTTCTCATAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACATATCTAACTGATGTAGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTGAACACTTGGAGTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTTGCCGATTCTTATTGGGACAGATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACATTTACGGCATTTGCTGGGTCACGTTCGACTACAAAAACAATCTCTCTTTACTTCCTCTACACTTCACTTTCCCTCGTCGCTCTAGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTGGTGCTGACCAGCTCGACTACGACCTTGACCATGACAATGACCACGAGCCATCCTCAGAGAACAAAGAAGTCAAATCGAACCGCAAGACTCAGTTTTTCCAATGGTGGTATTTTGGTGTCTGCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTACATCCAAGACACGTTTGGATGGGTTATCGGTTTTGCAATCCCAACCGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTGGCTGCGGGGTCTATGTTTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAGGATATTAGAGATTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTTAACGACCACGATTTAAATGCCATGGAACTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACACTGAAGCTAATACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAACCGGTTTTTCGGGGCTTGAAACCGTCAAGCTATTGCTTCGACTTTTACCTATATGGACGATGCTTCTTATGTTTGCAGTTATATTCCAACAACCCGCGACCTTTTTCACAAAGCAAGGTATGACTATGAAGAGAAACATCGGACCAAACTTCAAGATCCCACCAGCAACACTACAAAGCACTATCACTTTATCCATAATCCTTCTTATGCCCTTCTACGACAAAATCTTGATACCGATCGCCAAAAAACTAACGAAAAACGAAAAGGGTATTTCTGTGAAGGAAAGAATGGGGATTGGGATGTTCCTGTCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGATAAGCAAAATGATGAAGACTACACCTAATTTGGACCCCGTAAGCATATTGTGGCTCCTACCTCAGTACATTCTATTGGGAATCTCGGACATTTTCACAGTTGTTGGAATGCAAGAGTTCTTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTTTTCGGTGTGGGGAGTTTTGTGAGTGCTGCGTTGATTTCGATAATAGAGACTTACACGAGCTCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAACTATTATTGGCTTTTGGCTTTCACAAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGCAAGCATTTCAAGAGTAGAAGTGATGATGATGATCAATGTGATACAAATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

552

Amino Acids

61.73

Weight (kDa)

8.59

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 80 - 503 1.6e-75 POT family
MFS_1 PF07690 171 - 483 5.2e-10 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01350 AT5G14940
fragaria_vesca FvH4_6g49960
malus_domestica MD09G1040700.v1.1 MD17G1041000.v1.1
prunus_persica Prupe.3G277200_v2.0.a1 Prupe.3G277200_v2.0.a1
pyrus_communis pycom111g03160 pycom17g03740
rosa_chinensis RchiOBHm_Chr2g0170141
rosa_laevigata RLG00000021928
rosa_multiflora Rmu_sc0001605.1_g000022
rosa_roxburghii Rroxscaffold_2G00081560
rosa_rugosa Rorug02G0546100.1
rosa_samantha Rh2BG629700 Rh2CG599200 Rh2DG641600
rosa_wichuraiana Rw0G018340 Rw2G051190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 983, 1220
AciI CCGC 5 cut(s) 493, 615, 657, 981, 1218
AclWI GGATC 2 cut(s) 671, 1036
AcuI CTGAAG 1 cut(s) 855
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 2 cut(s) 1313, 1415
AflIII ACRYGT 1 cut(s) 579
AgeI ACCGGT 1 cut(s) 887
AgsI TTSAA 6 cut(s) 85, 144, 704, 905, 1039, 1615
AleI CACNNNNGTG 1 cut(s) 158
Alw21I GWGCWC 2 cut(s) 46, 1487
Alw26I GTCTC 1 cut(s) 1466
AlwI GGATC 2 cut(s) 671, 1036
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 5 cut(s) 149, 654, 796, 879, 1451
AsiGI ACCGGT 1 cut(s) 887
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 1028, 1279
AsuHPI GGTGA 2 cut(s) 232, 547
AvaII GGWCC 2 cut(s) 1028, 1279
BanII GRGCYC 1 cut(s) 1487
BauI CACGAG 2 cut(s) 455, 1480
BbsI GAAGAC 2 cut(s) 536, 1268
Bbv12I GWGCWC 2 cut(s) 46, 1487
BbvI GCAGC 5 cut(s) 161, 641, 783, 866, 1438
BccI CCATC 5 cut(s) 251, 403, 469, 582, 1205
BceAI ACGGC 1 cut(s) 312
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BclI TGATCA 2 cut(s) 868, 1636
BcoDI GTCTC 1 cut(s) 1466
BfaI CTAG 5 cut(s) 278, 374, 548, 791, 1533
BfmI CTRYAG 2 cut(s) 823, 1369
BisI GCNGC 6 cut(s) 150, 655, 797, 880, 1218, 1452
BlsI GCNGC 6 cut(s) 151, 656, 798, 881, 1219, 1453
Bme18I GGWCC 2 cut(s) 1028, 1279
BmgT120I GGNCC 2 cut(s) 1028, 1279
BmiI GGNNCC 3 cut(s) 1281, 1301, 1380
BmsI GCATC 2 cut(s) 104, 936
BpiI GAAGAC 2 cut(s) 536, 1268
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 1471
BsaBI GATNNNNATC 2 cut(s) 1121, 1635
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 379, 783
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bse118I RCCGGY 2 cut(s) 536, 887
Bse1I ACTGG 1 cut(s) 1511
Bse8I GATNNNNATC 2 cut(s) 1121, 1635
BseDI CCNNGG 2 cut(s) 379, 783
BseGI GGATG 5 cut(s) 243, 461, 570, 593, 1191
BseJI GATNNNNATC 2 cut(s) 1121, 1635
BseMII CTCAG 3 cut(s) 480, 515, 1322
BseNI ACTGG 1 cut(s) 1511
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 5 cut(s) 161, 641, 783, 866, 1438
BseYI CCCAGC 2 cut(s) 62, 305
Bsh1236I CGCG 2 cut(s) 983, 1220
Bsh1285I CGRYCG 1 cut(s) 1125
BshFI GGCC 1 cut(s) 378
BshTI ACCGGT 1 cut(s) 887
BsiEI CGRYCG 1 cut(s) 1125
BsiHKAI GWGCWC 2 cut(s) 46, 1487
BsiSI CCGG 2 cut(s) 537, 888
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 1466
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 80, 1359
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 46, 1487
Bsp1407I TGTACA 1 cut(s) 1413
Bsp143I GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 5 cut(s) 493, 615, 657, 981, 1218
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 3 cut(s) 479, 514, 1321
BspFNI CGCG 2 cut(s) 983, 1220
BspLI GGNNCC 3 cut(s) 1281, 1301, 1380
BspPI GGATC 2 cut(s) 671, 1036
BspQI GCTCTTC 1 cut(s) 51
BsrFI RCCGGY 2 cut(s) 536, 887
BsrGI TGTACA 1 cut(s) 1413
BsrI ACTGG 1 cut(s) 1511
BssAI RCCGGY 2 cut(s) 536, 887
BssECI CCNNGG 2 cut(s) 379, 783
BssMI GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
BssNI GRCGYC 1 cut(s) 384
BssSI CACGAG 2 cut(s) 455, 1480
BssT1I CCWWGG 2 cut(s) 379, 783
Bst2BI CACGAG 2 cut(s) 455, 1480
Bst4CI ACNGT 5 cut(s) 160, 559, 824, 910, 1345
Bst6I CTCTTC 4 cut(s) 16, 51, 203, 1010
BstACI GRCGYC 1 cut(s) 384
BstAUI TGTACA 1 cut(s) 1413
BstC8I GCNNGC 1 cut(s) 1607
BstDEI CTNAG 5 cut(s) 29, 103, 466, 501, 1308
BstDSI CCRYGG 1 cut(s) 783
BstF5I GGATG 5 cut(s) 243, 461, 570, 593, 1191
BstFNI CGCG 2 cut(s) 983, 1220
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 8 cut(s) 636, 679, 753, 805, 871, 1044, 1125, 1639
BstMAI GTCTC 1 cut(s) 1466
BstMBI GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
BstMCI CGRYCG 1 cut(s) 1125
BstMWI GCNNNNNNNGC 2 cut(s) 212, 413
BstSFI CTRYAG 2 cut(s) 823, 1369
BstUI CGCG 2 cut(s) 983, 1220
BstV1I GCAGC 5 cut(s) 161, 641, 783, 866, 1438
BstV2I GAAGAC 2 cut(s) 536, 1268
BstX2I RGATCY 1 cut(s) 1041
BstYI RGATCY 1 cut(s) 1041
BsuRI GGCC 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 1186
BtsCI GGATG 5 cut(s) 243, 461, 570, 593, 1191
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 1 cut(s) 1607
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 2 cut(s) 536, 887
Cfr13I GGNCC 2 cut(s) 1028, 1279
CseI GACGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 1312, 1414
CspAI ACCGGT 1 cut(s) 887
CviAII CATG 5 cut(s) 187, 443, 562, 784, 1390
CviQI GTAC 2 cut(s) 1312, 1414
DdeI CTNAG 5 cut(s) 29, 103, 466, 501, 1308
DpnI GATC 8 cut(s) 635, 678, 752, 804, 870, 1043, 1124, 1638
DpnII GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
DraI TTTAAA 1 cut(s) 777
Eam1104I CTCTTC 4 cut(s) 16, 51, 203, 1010
EarI CTCTTC 4 cut(s) 16, 51, 203, 1010
Ecl136II GAGCTC 1 cut(s) 1485
Eco130I CCWWGG 2 cut(s) 379, 783
Eco147I AGGCCT 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 1487
Eco47I GGWCC 2 cut(s) 1028, 1279
Eco53kI GAGCTC 1 cut(s) 1485
Eco57I CTGAAG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 1485
EcoT14I CCWWGG 2 cut(s) 379, 783
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 1487
ErhI CCWWGG 2 cut(s) 379, 783
FaeI CATG 5 cut(s) 190, 446, 565, 787, 1393
FalI AAGNNNNNCTT 2 cut(s) 1521, 1553
FaqI GGGAC 1 cut(s) 242
FatI CATG 5 cut(s) 186, 442, 561, 783, 1389
FauI CCCGC 2 cut(s) 650, 988
FbaI TGATCA 2 cut(s) 868, 1636
Fnu4HI GCNGC 6 cut(s) 150, 655, 797, 880, 1218, 1452
FokI GGATG 5 cut(s) 230, 448, 557, 600, 1198
FriOI GRGCYC 1 cut(s) 1487
Fsp4HI GCNGC 6 cut(s) 150, 655, 797, 880, 1218, 1452
FspBI CTAG 5 cut(s) 278, 374, 548, 791, 1533
GlaI GCGC 1 cut(s) 535
GluI GCNGC 6 cut(s) 150, 655, 797, 880, 1218, 1452
GsaI CCCAGC 2 cut(s) 66, 309
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 378
HapII CCGG 2 cut(s) 537, 888
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 5 cut(s) 190, 446, 565, 787, 1393
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 5 cut(s) 218, 234, 499, 552, 1326
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 2 cut(s) 537, 888
HphI GGTGA 2 cut(s) 232, 547
Hpy166II GTNNAC 3 cut(s) 163, 763, 1416
Hpy188I TCNGA 5 cut(s) 469, 807, 1028, 1333, 1528
Hpy188III TCNNGA 7 cut(s) 144, 680, 1039, 1114, 1488, 1585, 1615
Hpy8I GTNNAC 3 cut(s) 163, 763, 1416
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 1097, 1108, 1159
HpyCH4III ACNGT 5 cut(s) 160, 559, 824, 910, 1345
HpyCH4IV ACGT 2 cut(s) 313, 581
HpyCH4V TGCA 9 cut(s) 80, 95, 605, 799, 882, 962, 1357, 1514, 1605
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 413
HpyF3I CTNAG 5 cut(s) 29, 103, 466, 501, 1308
HpySE526I ACGT 2 cut(s) 313, 581
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 5 cut(s) 190, 446, 565, 787, 1393
HspAI GCGC 1 cut(s) 534
Ksp22I TGATCA 2 cut(s) 868, 1636
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 211, 1305
Lsp1109I GCAGC 5 cut(s) 161, 641, 783, 866, 1438
LweI GCATC 2 cut(s) 104, 936
MaeI CTAG 5 cut(s) 278, 374, 548, 791, 1533
MaeII ACGT 2 cut(s) 313, 581
MaeIII GTNAC 4 cut(s) 106, 309, 553, 818
MalI GATC 8 cut(s) 635, 678, 752, 804, 870, 1043, 1124, 1638
MboI GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
MflI RGATCY 1 cut(s) 1041
MhlI GDGCHC 2 cut(s) 46, 1487
MluCI AATT 3 cut(s) 139, 1273, 1651
MlyI GAGTC 2 cut(s) 493, 561
MmeI TCCRAC 3 cut(s) 997, 1330, 1506
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 4 cut(s) 389, 762, 776, 1657
MslI CAYNNNNRTG 4 cut(s) 158, 185, 447, 560
MspI CCGG 2 cut(s) 537, 888
Mva1269I GAATGC 2 cut(s) 80, 1359
MvnI CGCG 2 cut(s) 983, 1220
MwoI GCNNNNNNNGC 2 cut(s) 212, 413
NcoI CCATGG 1 cut(s) 783
NdeII GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
NlaIII CATG 5 cut(s) 190, 446, 565, 787, 1393
NlaIV GGNNCC 3 cut(s) 1281, 1301, 1380
NmuCI GTSAC 3 cut(s) 106, 309, 553
NsiI ATGCAT 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 158
PceI AGGCCT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 2 cut(s) 80, 1359
PfeI GAWTC 3 cut(s) 218, 234, 1326
PinAI ACCGGT 1 cut(s) 887
PkrI GCNGC 6 cut(s) 151, 656, 798, 881, 1219, 1453
Ple19I CGATCG 1 cut(s) 1125
PleI GAGTC 2 cut(s) 493, 560
PpsI GAGTC 2 cut(s) 493, 560
Psp124BI GAGCTC 1 cut(s) 1487
PspFI CCCAGC 2 cut(s) 62, 305
PspN4I GGNNCC 3 cut(s) 1281, 1301, 1380
PspPI GGNCC 2 cut(s) 1028, 1279
PsuI RGATCY 1 cut(s) 1041
PvuI CGATCG 1 cut(s) 1125
RsaI GTAC 2 cut(s) 1313, 1415
RsaNI GTAC 2 cut(s) 1312, 1414
RseI CAYNNNNRTG 4 cut(s) 158, 185, 447, 560
SacI GAGCTC 1 cut(s) 1487
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 389, 762, 776, 1657
SatI GCNGC 6 cut(s) 150, 655, 797, 880, 1218, 1452
Sau3AI GATC 8 cut(s) 633, 676, 750, 802, 868, 1041, 1122, 1636
Sau96I GGNCC 2 cut(s) 1028, 1279
SchI GAGTC 2 cut(s) 493, 561
SduI GDGCHC 2 cut(s) 46, 1487
SfaNI GCATC 2 cut(s) 104, 936
SfcI CTRYAG 2 cut(s) 823, 1369
SinI GGWCC 2 cut(s) 1028, 1279
SmiI ATTTAAAT 1 cut(s) 777
SmiMI CAYNNNNRTG 4 cut(s) 158, 185, 447, 560
SmlI CTYRAG 1 cut(s) 1486
SmoI CTYRAG 1 cut(s) 1486
Sse9I AATT 3 cut(s) 139, 1273, 1651
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 5 cut(s) 493, 615, 657, 981, 1218
SspMI CTAG 5 cut(s) 278, 374, 548, 791, 1533
SstI GAGCTC 1 cut(s) 1487
StuI AGGCCT 1 cut(s) 378
StyI CCWWGG 2 cut(s) 379, 783
SwaI ATTTAAAT 1 cut(s) 777
TaaI ACNGT 5 cut(s) 160, 559, 824, 910, 1345
TaiI ACGT 2 cut(s) 316, 584
TaqI TCGA 7 cut(s) 317, 426, 488, 620, 925, 1227, 1463
TasI AATT 3 cut(s) 139, 1273, 1651
TatI WGTACW 2 cut(s) 1311, 1413
TauI GCSGC 1 cut(s) 1220
TfiI GAWTC 3 cut(s) 218, 234, 1326
Tru1I TTAA 4 cut(s) 389, 762, 776, 1657
Tru9I TTAA 4 cut(s) 389, 762, 776, 1657
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 3 cut(s) 106, 309, 553
TseI GCWGC 5 cut(s) 149, 654, 796, 879, 1451
Tsp45I GTSAC 3 cut(s) 106, 309, 553
TspDTI ATGAA 3 cut(s) 175, 1028, 1274
TspRI CASTG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 1028, 1279
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XspI CTAG 5 cut(s) 278, 374, 548, 791, 1533
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.