Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001605.1

Orthogroup ID

OG0012381

Physical Location & Seq

Genomic Coordinates Reverse (-)

64660 .. 65722

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001605.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgggtaataagccagttgtgagcatgcttcaagtttttaaggcagctgcattgaaattactgaattccaaagtcaagttacccgatgaaaatgatgttactgagctagagcttcaagggaaaccgctctgtcgacatcagaacttaagcagcaatgaaggcttgaacaatgagcatcccaaaagcagcatccacatgttcgaaaatgcaaaagttattcttaggcttttgcccatatggctaatgcttttaatgtttgcagtgattttccagcaaccttcgacattcttcaccaaacaaggcatgacaatgaagaggaatatcggaagcaattttctgattccacccgcaacactgcagagtgctattgcactttctatagttgtgttgatgcctctttatgacaaagttctgatcccaattactaaggtcctgacttgtaacgaaaagggcatcaccgtaatgcaaaggatggggattgggatattcacttcggtcatagcactgatcattgcagcacttgtagagacaagaaggctccatatcagcagaaatatggaaatcctaggatctcaatctgagacggttccattaagcatattctggttgctgccacagtacattcttctgggcatttcggacattttcactgtcgttgggatgcaagagttcttttactctgaatttcccattagaatgagaacaatggcctttgcactatacaccagtgtttttggggtcgggagctacttgagtgcccttttgatctcaacagttgaaggcatcacaagttcaaatggaagtaagagctggttctgtgatgatatgaatgaagcaaggctagacaagtactactggtttttagcagcagcaagtgcactgagctttctgttttttgtgattatttcatcattttacacaagtaagagggatttggagttggacggtaatgaaagttgtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

321

Amino Acids

36.04

Weight (kDa)

8.58

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01350 AT5G14940
fragaria_vesca	FvH4_6g49960
malus_domestica	MD09G1040700.v1.1 MD17G1041000.v1.1
prunus_persica	Prupe.3G277200_v2.0.a1 Prupe.3G277200_v2.0.a1
pyrus_communis	pycom111g03160 pycom17g03740
rosa_chinensis	RchiOBHm_Chr2g0170141
rosa_laevigata	RLG00000021928
rosa_multiflora	Rmu_sc0001605.1_g000022
rosa_roxburghii	Rroxscaffold_2G00081560
rosa_rugosa	Rorug02G0546100.1
rosa_samantha	Rh2BG629700 Rh2CG599200 Rh2DG641600
rosa_wichuraiana	Rw0G018340 Rw2G051190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	2 cut(s)	125, 348
AclWI	GGATC	2 cut(s)	409, 577
AcsI	RAATTY	2 cut(s)	64, 683
AfaI	GTAC	2 cut(s)	620, 851
AflII	CTTAAG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	6 cut(s)	32, 55, 116, 166, 779, 795
AluBI	AGCT	6 cut(s)	47, 106, 112, 747, 810, 885
AluI	AGCT	6 cut(s)	47, 106, 112, 747, 810, 885
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	2 cut(s)	521, 575
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	2 cut(s)	409, 577
AoxI	GGCC	1 cut(s)	708
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	8 cut(s)	44, 47, 150, 186, 515, 610, 866, 869
ApoI	RAATTY	2 cut(s)	64, 683
AspA2I	CCTAGG	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	283, 448
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	430
AvrII	CCTAGG	1 cut(s)	565
BaeGI	GKGCMC	2 cut(s)	760, 880
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	8 cut(s)	34, 56, 162, 198, 527, 597, 878, 881
BccI	CCATC	1 cut(s)	466
BclI	TGATCA	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	521, 575
BfaI	CTAG	3 cut(s)	107, 566, 842
BfmI	CTRYAG	2 cut(s)	356, 378
BfrI	CTTAAG	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	8 cut(s)	45, 48, 151, 187, 516, 611, 867, 870
BlnI	CCTAGG	1 cut(s)	565
BlsI	GCNGC	8 cut(s)	46, 49, 152, 188, 517, 612, 868, 871
BmcAI	AGTACT	1 cut(s)	851
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	539, 588
BmsI	GCATC	6 cut(s)	184, 198, 381, 462, 651, 792
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	772
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	14, 726, 860
Bse3DI	GCAATG	2 cut(s)	160, 510
Bse8I	GATNNNNATC	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	4 cut(s)	175, 189, 477, 666
BseJI	GATNNNNATC	1 cut(s)	574
BseMI	GCAATG	2 cut(s)	160, 510
BseMII	CTCAG	3 cut(s)	93, 570, 872
BseNI	ACTGG	3 cut(s)	14, 726, 860
BseSI	GKGCMC	2 cut(s)	760, 880
BseXI	GCAGC	8 cut(s)	34, 56, 162, 198, 527, 597, 878, 881
BshFI	GGCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	880
BsmAI	GTCTC	2 cut(s)	521, 575
BsmBI	CGTCTC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	710
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	760, 880
Bsp143I	GATC	4 cut(s)	414, 507, 569, 765
BspACI	CCGC	2 cut(s)	125, 348
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	3 cut(s)	94, 571, 873
BspLI	GGNNCC	2 cut(s)	539, 588
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	2 cut(s)	409, 577
BspT104I	TTCGAA	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	160, 510
BsrI	ACTGG	3 cut(s)	14, 726, 860
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	4 cut(s)	414, 507, 569, 765
BssT1I	CCWWGG	1 cut(s)	565
Bst4CI	ACNGT	6 cut(s)	460, 586, 618, 652, 775, 947
Bst6I	CTCTTC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	5 cut(s)	102, 221, 426, 579, 881
BstF5I	GGATG	4 cut(s)	175, 189, 477, 666
BstKTI	GATC	4 cut(s)	417, 510, 572, 768
BstMAI	GTCTC	2 cut(s)	521, 575
BstMBI	GATC	4 cut(s)	414, 507, 569, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 238, 875
BstNSI	RCATGY	2 cut(s)	28, 199
BstSFI	CTRYAG	2 cut(s)	356, 378
BstSLI	GKGCMC	2 cut(s)	760, 880
BstV1I	GCAGC	8 cut(s)	34, 56, 162, 198, 527, 597, 878, 881
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	710
BtsCI	GGATG	4 cut(s)	175, 189, 477, 666
BtsI	GCAGTG	2 cut(s)	267, 353
BtsIMutI	CAGTG	6 cut(s)	267, 353, 503, 648, 733, 878
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	619, 850
CviAII	CATG	3 cut(s)	25, 196, 304
CviQI	GTAC	2 cut(s)	619, 850
DdeI	CTNAG	5 cut(s)	102, 221, 426, 579, 881
DpnI	GATC	4 cut(s)	416, 509, 571, 767
DpnII	GATC	4 cut(s)	414, 507, 569, 765
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	3 cut(s)	28, 199, 307
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	3 cut(s)	24, 195, 303
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	8 cut(s)	45, 48, 151, 187, 516, 611, 867, 870
FokI	GGATG	4 cut(s)	162, 176, 484, 673
Fsp4HI	GCNGC	8 cut(s)	45, 48, 151, 187, 516, 611, 867, 870
FspBI	CTAG	3 cut(s)	107, 566, 842
GluI	GCNGC	8 cut(s)	45, 48, 151, 187, 516, 611, 867, 870
HaeIII	GGCC	1 cut(s)	710
Hin1II	CATG	3 cut(s)	28, 199, 307
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	2 cut(s)	283, 448
Hpy166II	GTNNAC	2 cut(s)	134, 878
Hpy188I	TCNGA	7 cut(s)	141, 326, 339, 414, 580, 640, 682
Hpy188III	TCNNGA	2 cut(s)	433, 742
Hpy8I	GTNNAC	2 cut(s)	134, 878
HpyAV	CCTTC	4 cut(s)	152, 288, 528, 773
HpyCH4III	ACNGT	6 cut(s)	460, 586, 618, 652, 775, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 238, 875
HpyF3I	CTNAG	5 cut(s)	102, 221, 426, 579, 881
Hsp92II	CATG	3 cut(s)	28, 199, 307
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	414, 507, 569, 765
LmnI	GCTCC	2 cut(s)	543, 744
LpnPI	CCDG	8 cut(s)	27, 284, 446, 589, 614, 739, 796, 841
Lsp1109I	GCAGC	8 cut(s)	34, 56, 162, 198, 527, 597, 878, 881
LweI	GCATC	6 cut(s)	184, 198, 381, 462, 651, 792
MaeI	CTAG	3 cut(s)	107, 566, 842
MaeIII	GTNAC	3 cut(s)	78, 97, 440
MalI	GATC	4 cut(s)	416, 509, 571, 767
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	4 cut(s)	414, 507, 569, 765
MboII	GAAGA	3 cut(s)	280, 325, 617
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	2 cut(s)	760, 880
MluCI	AATT	5 cut(s)	56, 64, 331, 420, 683
MmeI	TCCRAC	1 cut(s)	921
MnlI	CCTC	3 cut(s)	309, 405, 921
MseI	TTAA	4 cut(s)	39, 146, 251, 593
MslI	CAYNNNNRTG	4 cut(s)	194, 308, 461, 695
MspA1I	CMGCKG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	159, 238, 875
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	4 cut(s)	414, 507, 569, 765
NlaIII	CATG	3 cut(s)	28, 199, 307
NlaIV	GGNNCC	2 cut(s)	539, 588
NspI	RCATGY	2 cut(s)	28, 199
NspV	TTCGAA	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	28
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	8 cut(s)	46, 49, 152, 188, 517, 612, 868, 871
PpuMI	RGGWCCY	1 cut(s)	430
PscI	ACATGT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	539, 588
PspPI	GGNCC	1 cut(s)	430
PspPPI	RGGWCCY	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	620, 851
RsaNI	GTAC	2 cut(s)	619, 850
RseI	CAYNNNNRTG	4 cut(s)	194, 308, 461, 695
SalI	GTCGAC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	39, 146, 251, 593
SatI	GCNGC	8 cut(s)	45, 48, 151, 187, 516, 611, 867, 870
Sau3AI	GATC	4 cut(s)	414, 507, 569, 765
Sau96I	GGNCC	1 cut(s)	430
ScaI	AGTACT	1 cut(s)	851
SduI	GDGCHC	2 cut(s)	760, 880
SetI	ASST	8 cut(s)	49, 108, 114, 280, 432, 749, 812, 887
SfaNI	GCATC	6 cut(s)	184, 198, 381, 462, 651, 792
SfcI	CTRYAG	2 cut(s)	356, 378
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	4 cut(s)	194, 308, 461, 695
SmlI	CTYRAG	2 cut(s)	145, 751
SmoI	CTYRAG	2 cut(s)	145, 751
SphI	GCATGC	1 cut(s)	28
Sse9I	AATT	5 cut(s)	56, 64, 331, 420, 683
SsiI	CCGC	2 cut(s)	125, 348
SspMI	CTAG	3 cut(s)	107, 566, 842
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	6 cut(s)	460, 586, 618, 652, 775, 947
TaqI	TCGA	3 cut(s)	133, 201, 281
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	5 cut(s)	56, 64, 331, 420, 683
TatI	WGTACW	2 cut(s)	618, 849
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	4 cut(s)	39, 146, 251, 593
Tru9I	TTAA	4 cut(s)	39, 146, 251, 593
TscAI	CASTG	6 cut(s)	267, 360, 510, 655, 733, 885
TseI	GCWGC	8 cut(s)	44, 47, 150, 186, 515, 610, 866, 869
TspDTI	ATGAA	7 cut(s)	102, 171, 326, 842, 846, 897, 966
TspRI	CASTG	6 cut(s)	267, 360, 510, 655, 733, 885
Vha464I	CTTAAG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	2 cut(s)	64, 683
XceI	RCATGY	2 cut(s)	28, 199
XmaJI	CCTAGG	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	3 cut(s)	107, 566, 842
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.