Rh2CG599200

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012381
Physical Location & Seq
Forward (+)
77464735 .. 77468492
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG599200.1

Sequence Viewer

Length: 1347 bp
ATGTCCCGGGCATCGTCCGATCAAGCAAACAAAACAAGTTCATCTTCATTTCTGTTCTGCTCATTGTATTTGATTTCTCTTGGTCAAGGTGGCTACAACCCATCTTTGCAAGCTTTTGGAGCAGATCAACTTGATAGTGAAGATGAAGAGTTGCCTAGTAGCAAAGATGACAAAAAATCCAACAAAAAGAGTTTGTTCTTTCAATGGTGGTACTTTGGTATTTGTAGTGGCACCGTCTTGGGTATAAGTGTTATGTCCTACATTCAAGATACTTTTGGTTGGATACTAGGTTTTGCCATCCCCATGATTTCGATGGTCACATCAGTCATAGTTTTCTCGTGTGGAAGCCCAATTTATACATATAGACAGAGAAATGAGACCATGGGTAATAAGCCAGTTGTGAGCATGCTTCAAGTTTTTAAGGCAGCTGCATTGAAATTACTGAATTCCAAAGTCAAGTTACCCGATGAAAATGATGTTACTGAGCTAGAGCTTCAAGGGAAACCGCTCTGTCGACATCAGAACTTAAGCAGCAATGAAGGCTTGAACAATGAGCATCCCAAAAGCAGCATCCACATGTTCGAAAATGCAAAAGTTATTCTTAGGCTTTTGCCCATATGGCTAATGCTTTTAATGTTTGCAGTGATTTTCCAGCAACCTTCGACATTCTTCACCAAACAAGGCATGACAATGAAGAGGAATATCGGAAGCAATTTTCTGATTCCACCCGCAACACTGCAGAGTGCTATTGCACTTTCTATAGTTGTGTTGATGCCTCTTTATGACAAAGTTCTGATCCCAATTACTAAGGTCCTGACTTGTAACGAAAAGGGTATCACCGTAATGCAAAGGATGGGGATTGGGATATTCACTTCGGTCATAGCACTGATCATTGCAGCACTTGTAGAGACAAGAAGGCTCCATATCAGCAGAAATATGGAAATCCTAGGATCTCAATCTGAGACGGTTCCATTAAGCATATTCTGGTTGCTGCCACAGTACATTCTTCTGGGCATTTCGGACATTTTCACTGTCGTTGGGATGCAAGAGTTCTTTTACTCTGAATTTCCCATTAGAATGAGAACAATGGCCTTTGCACTATACACCAGTGTTTTTGGGGTCGGGAGCTACTTGAGTGCCCTTTTGATCTCAACAGTTGAAGGCATCACAAGTTCAAATGGAAGTAAGAGCTGGTTCTGTGATGATATGAATGAAGCAAGGCTAGACAAGTACTACTGGTTTTTAGCAGCAGCAAGTGCACTGAGCTTTCTGTTTTTTGTGATTATTTCATCATTTTACACAAGTAAGAGGGATTTGGAGTTGGACGGTAATGAAAGTTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

448

Amino Acids

50.13

Weight (kDa)

7.53

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 13 - 398 2e-69 POT family
MFS_1 PF07690 17 - 378 1.8e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01350 AT5G14940
fragaria_vesca FvH4_6g49960
malus_domestica MD09G1040700.v1.1 MD17G1041000.v1.1
prunus_persica Prupe.3G277200_v2.0.a1 Prupe.3G277200_v2.0.a1
pyrus_communis pycom111g03160 pycom17g03740
rosa_chinensis RchiOBHm_Chr2g0170141
rosa_laevigata RLG00000021928
rosa_multiflora Rmu_sc0001605.1_g000022
rosa_roxburghii Rroxscaffold_2G00081560
rosa_rugosa Rorug02G0546100.1
rosa_samantha Rh2BG629700 Rh2CG599200 Rh2DG641600
rosa_wichuraiana Rw0G018340 Rw2G051190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccBSI CCGCTC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 514
AciI CCGC 2 cut(s) 506, 729
AclWI GGATC 2 cut(s) 790, 958
AcsI RAATTY 2 cut(s) 445, 1064
AfaI GTAC 3 cut(s) 212, 1001, 1232
AflII CTTAAG 1 cut(s) 526
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 8 cut(s) 203, 266, 413, 436, 497, 547, 1160, 1176
AluBI AGCT 7 cut(s) 113, 428, 487, 493, 1128, 1191, 1266
AluI AGCT 7 cut(s) 113, 428, 487, 493, 1128, 1191, 1266
Alw21I GWGCWC 1 cut(s) 1261
Alw26I GTCTC 3 cut(s) 371, 902, 956
Alw44I GTGCAC 1 cut(s) 1257
AlwI GGATC 2 cut(s) 790, 958
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 1089
ApaLI GTGCAC 1 cut(s) 1257
ApeKI GCWGC 8 cut(s) 425, 428, 531, 567, 896, 991, 1247, 1250
ApoI RAATTY 2 cut(s) 445, 1064
AspA2I CCTAGG 1 cut(s) 946
AspS9I GGNCC 1 cut(s) 811
AsuC2I CCSGG 2 cut(s) 7, 8
AsuHPI GGTGA 2 cut(s) 664, 829
AsuII TTCGAA 1 cut(s) 582
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 811
AvrII CCTAGG 1 cut(s) 946
BaeGI GKGCMC 2 cut(s) 1141, 1261
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BanI GGYRCC 1 cut(s) 230
BauI CACGAG 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 1261
BbvI GCAGC 8 cut(s) 415, 437, 543, 579, 908, 978, 1259, 1262
BccI CCATC 4 cut(s) 109, 305, 307, 847
BciVI GTATCC 1 cut(s) 276
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 2 cut(s) 7, 8
BcoDI GTCTC 3 cut(s) 371, 902, 956
BfaI CTAG 5 cut(s) 156, 287, 488, 947, 1223
BfmI CTRYAG 2 cut(s) 737, 759
BfrI CTTAAG 1 cut(s) 526
BfuI GTATCC 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 619
BisI GCNGC 8 cut(s) 426, 429, 532, 568, 897, 992, 1248, 1251
BlnI CCTAGG 1 cut(s) 946
BlsI GCNGC 8 cut(s) 427, 430, 533, 569, 898, 993, 1249, 1252
BmcAI AGTACT 1 cut(s) 1232
Bme1390I CCNGG 2 cut(s) 7, 8
Bme18I GGWCC 1 cut(s) 811
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 3 cut(s) 232, 920, 969
BmrFI CCNGG 2 cut(s) 7, 8
BmsI GCATC 6 cut(s) 20, 565, 579, 762, 1032, 1173
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 1153
BpuMI CCSGG 2 cut(s) 7, 8
BsaBI GATNNNNATC 1 cut(s) 955
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 6, 381, 946
Bse1I ACTGG 3 cut(s) 395, 1107, 1241
Bse3DI GCAATG 2 cut(s) 541, 891
Bse8I GATNNNNATC 1 cut(s) 955
BseDI CCNNGG 3 cut(s) 6, 381, 946
BseGI GGATG 5 cut(s) 297, 556, 570, 858, 1047
BseJI GATNNNNATC 1 cut(s) 955
BseMI GCAATG 2 cut(s) 541, 891
BseMII CTCAG 3 cut(s) 474, 951, 1253
BseNI ACTGG 3 cut(s) 395, 1107, 1241
BseSI GKGCMC 2 cut(s) 1141, 1261
BseXI GCAGC 8 cut(s) 415, 437, 543, 579, 908, 978, 1259, 1262
BshFI GGCC 1 cut(s) 1091
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 1261
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 7
BsmAI GTCTC 3 cut(s) 371, 902, 956
BsmBI CGTCTC 1 cut(s) 956
BsnI GGCC 1 cut(s) 1091
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 1141, 1261
Bsp143I GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 2 cut(s) 506, 729
BspANI GGCC 1 cut(s) 1091
BspCNI CTCAG 3 cut(s) 475, 952, 1254
BspLI GGNNCC 3 cut(s) 232, 920, 969
BspMAI CTGCAG 1 cut(s) 741
BspPI GGATC 2 cut(s) 790, 958
BspT104I TTCGAA 1 cut(s) 582
BspT107I GGYRCC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 526
BspTNI GGTCTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 541, 891
BsrI ACTGG 3 cut(s) 395, 1107, 1241
BssECI CCNNGG 3 cut(s) 6, 381, 946
BssMI GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
BssSI CACGAG 1 cut(s) 337
BssT1I CCWWGG 2 cut(s) 381, 946
Bst2BI CACGAG 1 cut(s) 337
Bst4CI ACNGT 7 cut(s) 235, 841, 967, 999, 1033, 1156, 1328
Bst6I CTCTTC 2 cut(s) 141, 689
BstAFI CTTAAG 1 cut(s) 526
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 111, 407
BstDEI CTNAG 5 cut(s) 483, 602, 807, 960, 1262
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 5 cut(s) 297, 556, 570, 858, 1047
BstKTI GATC 6 cut(s) 22, 127, 798, 891, 953, 1149
BstMAI GTCTC 3 cut(s) 371, 902, 956
BstMBI GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
BstMWI GCNNNNNNNGC 4 cut(s) 119, 540, 619, 1256
BstNSI RCATGY 2 cut(s) 409, 580
BstSCI CCNGG 2 cut(s) 5, 6
BstSFI CTRYAG 2 cut(s) 737, 759
BstSLI GKGCMC 2 cut(s) 1141, 1261
BstV1I GCAGC 8 cut(s) 415, 437, 543, 579, 908, 978, 1259, 1262
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 1091
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 5 cut(s) 297, 556, 570, 858, 1047
BtsI GCAGTG 2 cut(s) 648, 734
BtsIMutI CAGTG 6 cut(s) 648, 734, 884, 1029, 1114, 1259
Cac8I GCNNGC 2 cut(s) 111, 407
Cfr13I GGNCC 1 cut(s) 811
Cfr9I CCCGGG 1 cut(s) 6
Csp6I GTAC 3 cut(s) 211, 1000, 1231
CviAII CATG 5 cut(s) 304, 382, 406, 577, 685
CviQI GTAC 3 cut(s) 211, 1000, 1231
DdeI CTNAG 5 cut(s) 483, 602, 807, 960, 1262
DpnI GATC 6 cut(s) 21, 126, 797, 890, 952, 1148
DpnII GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
Eam1104I CTCTTC 2 cut(s) 141, 689
EarI CTCTTC 2 cut(s) 141, 689
Eco130I CCWWGG 2 cut(s) 381, 946
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 811
Eco88I CYCGRG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 381, 946
ErhI CCWWGG 2 cut(s) 381, 946
Esp3I CGTCTC 1 cut(s) 956
FaeI CATG 5 cut(s) 307, 385, 409, 580, 688
FalI AAGNNNNNCTT 4 cut(s) 28, 60, 585, 617
FatI CATG 5 cut(s) 303, 381, 405, 576, 684
FauI CCCGC 1 cut(s) 736
FauNDI CATATG 1 cut(s) 617
FbaI TGATCA 1 cut(s) 888
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 8 cut(s) 426, 429, 532, 568, 897, 992, 1248, 1251
FokI GGATG 5 cut(s) 284, 543, 557, 865, 1054
Fsp4HI GCNGC 8 cut(s) 426, 429, 532, 568, 897, 992, 1248, 1251
FspBI CTAG 5 cut(s) 156, 287, 488, 947, 1223
GluI GCNGC 8 cut(s) 426, 429, 532, 568, 897, 992, 1248, 1251
HaeIII GGCC 1 cut(s) 1091
HapII CCGG 1 cut(s) 7
Hin1II CATG 5 cut(s) 307, 385, 409, 580, 688
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 721
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 664, 829
Hpy166II GTNNAC 2 cut(s) 515, 1259
Hpy188I TCNGA 8 cut(s) 19, 522, 707, 720, 795, 961, 1021, 1063
Hpy188III TCNNGA 3 cut(s) 266, 814, 1123
Hpy8I GTNNAC 2 cut(s) 515, 1259
HpyAV CCTTC 4 cut(s) 533, 669, 909, 1154
HpyCH4III ACNGT 7 cut(s) 235, 841, 967, 999, 1033, 1156, 1328
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 540, 619, 1256
HpyF3I CTNAG 5 cut(s) 483, 602, 807, 960, 1262
Hsp92II CATG 5 cut(s) 307, 385, 409, 580, 688
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
LmnI GCTCC 3 cut(s) 119, 924, 1125
LpnPI CCDG 9 cut(s) 20, 408, 665, 827, 970, 995, 1120, 1177, 1222
Lsp1109I GCAGC 8 cut(s) 415, 437, 543, 579, 908, 978, 1259, 1262
LweI GCATC 6 cut(s) 20, 565, 579, 762, 1032, 1173
MaeI CTAG 5 cut(s) 156, 287, 488, 947, 1223
MaeIII GTNAC 4 cut(s) 316, 459, 478, 821
MalI GATC 6 cut(s) 21, 126, 797, 890, 952, 1148
MbiI CCGCTC 1 cut(s) 508
MboI GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
MboII GAAGA 6 cut(s) 36, 152, 158, 661, 706, 998
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 2 cut(s) 1141, 1261
MluCI AATT 6 cut(s) 351, 437, 445, 712, 801, 1064
MmeI TCCRAC 3 cut(s) 204, 260, 1302
MnlI CCTC 3 cut(s) 690, 786, 1302
MseI TTAA 4 cut(s) 420, 527, 632, 974
MslI CAYNNNNRTG 5 cut(s) 302, 575, 689, 842, 1076
MspA1I CMGCKG 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 526
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 7, 8
MwoI GCNNNNNNNGC 4 cut(s) 119, 540, 619, 1256
NciI CCSGG 2 cut(s) 7, 8
NcoI CCATGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 617
NdeII GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
NlaIII CATG 5 cut(s) 307, 385, 409, 580, 688
NlaIV GGNNCC 3 cut(s) 232, 920, 969
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 2 cut(s) 409, 580
NspV TTCGAA 1 cut(s) 582
PaeI GCATGC 1 cut(s) 409
PciI ACATGT 1 cut(s) 576
PfeI GAWTC 1 cut(s) 721
PkrI GCNGC 8 cut(s) 427, 430, 533, 569, 898, 993, 1249, 1252
PpuMI RGGWCCY 1 cut(s) 811
PscI ACATGT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 811
PspN4I GGNNCC 3 cut(s) 232, 920, 969
PspPI GGNCC 1 cut(s) 811
PspPPI RGGWCCY 1 cut(s) 811
PstI CTGCAG 1 cut(s) 741
PsuI RGATCY 1 cut(s) 950
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 3 cut(s) 212, 1001, 1232
RsaNI GTAC 3 cut(s) 211, 1000, 1231
RseI CAYNNNNRTG 5 cut(s) 302, 575, 689, 842, 1076
SalI GTCGAC 1 cut(s) 513
SaqAI TTAA 4 cut(s) 420, 527, 632, 974
SatI GCNGC 8 cut(s) 426, 429, 532, 568, 897, 992, 1248, 1251
Sau3AI GATC 6 cut(s) 19, 124, 795, 888, 950, 1146
Sau96I GGNCC 1 cut(s) 811
ScaI AGTACT 1 cut(s) 1232
ScrFI CCNGG 2 cut(s) 7, 8
SduI GDGCHC 2 cut(s) 1141, 1261
SfaNI GCATC 6 cut(s) 20, 565, 579, 762, 1032, 1173
SfcI CTRYAG 2 cut(s) 737, 759
SfuI TTCGAA 1 cut(s) 582
SinI GGWCC 1 cut(s) 811
SmaI CCCGGG 1 cut(s) 8
SmiMI CAYNNNNRTG 5 cut(s) 302, 575, 689, 842, 1076
SmlI CTYRAG 2 cut(s) 526, 1132
SmoI CTYRAG 2 cut(s) 526, 1132
SphI GCATGC 1 cut(s) 409
Sse9I AATT 6 cut(s) 351, 437, 445, 712, 801, 1064
SsiI CCGC 2 cut(s) 506, 729
SspMI CTAG 5 cut(s) 156, 287, 488, 947, 1223
StyD4I CCNGG 2 cut(s) 5, 6
StyI CCWWGG 2 cut(s) 381, 946
TaaI ACNGT 7 cut(s) 235, 841, 967, 999, 1033, 1156, 1328
TaqI TCGA 4 cut(s) 311, 514, 582, 662
TaqII GACCGA 1 cut(s) 865
TasI AATT 6 cut(s) 351, 437, 445, 712, 801, 1064
TatI WGTACW 2 cut(s) 999, 1230
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 4 cut(s) 420, 527, 632, 974
Tru9I TTAA 4 cut(s) 420, 527, 632, 974
TscAI CASTG 6 cut(s) 648, 741, 891, 1036, 1114, 1266
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 8 cut(s) 425, 428, 531, 567, 896, 991, 1247, 1250
Tsp45I GTSAC 1 cut(s) 316
TspMI CCCGGG 1 cut(s) 6
TspRI CASTG 6 cut(s) 648, 741, 891, 1036, 1114, 1266
Vha464I CTTAAG 1 cut(s) 526
VneI GTGCAC 1 cut(s) 1257
VpaK11BI GGWCC 1 cut(s) 811
XapI RAATTY 2 cut(s) 445, 1064
XceI RCATGY 2 cut(s) 409, 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmaI CCCGGG 1 cut(s) 6
XmaJI CCTAGG 1 cut(s) 946
XmiI GTMKAC 1 cut(s) 514
XspI CTAG 5 cut(s) 156, 287, 488, 947, 1223
ZrmI AGTACT 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.