Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010273

Physical Location & Seq

Genomic Coordinates Reverse (-)

5047515 .. 5057666

Gene Structure 10152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5541 bp

ATGAGCAATCCAAGCAGTTCCGGCTTGGGTTCAAGTTCAGGTTTGACTCATTTCGGGATCGGTTTGGCTAATACTGTTCAGTCGGAAGTTACTCCTTACTTGCCGCTACCGTCGTTACCTATATTCTGCGGTGCGGCCGAACCTGGAGAGTTCAAGTTGTTCGATGAGGTTGGCCAAGGTAGTGGCTACAGGTCGTTGGATCGCAGTGAGATTCTCGCGCAATCTAGTAGAATCGCAAATATGCTTCATGAGACTGACGTTTCTTACCTGGATCTTAGAAACGAGGCTAGGGCGCCCGATTGTAATTCTGGGGAGCATTTTCAGTTATATGACCTAGTTCTACGATGCAATCCTGGAGCATTTGAGTATGTTACCCCCGGTCCGACCTGCGATCCACTCTTTACCAATGAAGGGCCTCAAAAGATAATTTCTGAACCAAGTGTTCCTGTCAAGATGCAGCGACAGACGGATACTCATTTAGCTAGGAGTATCGAACCTGAACCTGTGAAAAGGGTATTACGACCAAATCATGTTGAAGATCATAGTTGGCAGCACGAAACTCTGACAAACCAGTCACCGAAAGATGTTACTGCATATGACTCTCGGCCTGAAACGATCACCATGAATGAACTTTCTGCTTCCAAAAAGCCAAAGGGAAAGAAGAAACGTAAAGATGACTTGTCATCAGTTCAACCAGATCCATCTGTGCTGCAAGAGTCCATCGTACAAAACTTTTGTGAGATGTTGGAGGACTTCTGTGGCAGAGCTGAAGTCCCTGGTGATGATAGGGATGAAGCAGAGTGGTCATCAGTGCCCGTTGATGAAGTTCGTGTTCTTATAAATGAATTGATGACTATACGGTCAAAAATGCTTCTGCATATGGTACCTGTTGATATTCTATCAAGGTTACTGCGCACTCTGGATCATCAGATACACAGGGCAGAAGGCTTGTCCATTTATAGTGAACATTCAGATTCAGATTCAGTGTTGTTGGTTCTTGGTGCCCTTGAGTCAATCCATGCATCGCTAGCAGTGATGGCCAACAGTGATATGCCAAAGCAGCTCTACAAGGAGGAGATAATTGAGAGAATTCTGGAGTTTTCTAGGCACCAAATGATGGCTGTTATGTCTGCTTATGATCCATCATACCGCACTGGAAGTAAACCGGCAGAAAATTTGGCATTTGAAGGTGATGATGATGATGATAATCCAGATCATGACATGGGGTCAGCCAGCAAAAGGCGGCGCATAGTAAAAAACAGCAAAGTAAAGAAGGCGTCAGTAAACAGGATCTCTGGAGCAGTAAATACTGCACTACAGAAACTTTGCACTATTCTTGGCTTACTCAAGGACCTGTTGTTGGTAGAAAGGTTGTCTGACAGTTGCATTTTACAACTGTTGAAGACAAGTATTACAACATTTCTAGTGGAAAATATCCAAATTCTGCAACTTAAAGCAATTAGCTTAATCGGTGGTATTTATAATTCATATTCTCAACACCGAACATATGTGATAGATGAAATATCTCAATTGCTCTGGAAGTTACCTTCCTCGAAACGAGCATTGAGAGCGTATCTTCTCCCTGATGAAGAACAGAGGCAGATTCAAATGGTCACTGCTTTGCTCATTCAGTTGGTTCACAACAGCACAAGCCTTCCTGAAACCTCGAGACAGGCTGCCAGTGGAAACTCTATACTAGAGACCTCAGTTGATGTTGGCTACCTTACTAAGTGTCATGAAGCGGCTACAGAAACATGTTGCCTCTTCTGGACTCGTGTCCTTGAACGATTTACCAGTTTTAAGGGTCAGGACGCTTCTGAGATAAAATTGATTATTGAGAATCTTGTTATGGACTTACTGACAGCATTAAATCTTCCTGAATATCCGTCTGTGTCTCCTATTCTTGAGGTTCTCTGTGTCATACTGCTACATAATGCAGGGTTGAAATCAAAAGATGTCTCTGCTCGAATAATGGCCATTGAGTTGCTAGGTACAATAGCTGCAAGGTTGAAACGTGATGCTGTCCTCTGCAGTAAAGACAGATTCTGGACGTTACTAGAGTCAGATAGTGAAATTAGCGTTGATCAAGTTTGCACAAAAGATTGCACATTTTGTTTAGGTAAAAGGGCTGGGAACTTATTGGTCTGTCAAATTTGTCAAAGGCGGTTTCATGGTGACTGTTTGGGTTTAAAGGAACTAGACATTTCAAGTCGAAATTGGCACTGTCCGCTTTGTGTATGCAAGAGGCAACTTCTTGTACTACAGTCTTATTGCAAGACTGACACCAAGGGTACTGGTAAGTTGGAATCAGAAGAAAGCATCGAAAATCCAAGTATGATTACAAAGACCGAAGTTGTGCAACAGATGCTCTTGAATTACCTTCAGGATGTAGGATCAGCTGATGATGTGCATACTTTCATTTGCTGGTTTTATCTGTGCCTTTGGTATAAAGATGTCCCAAAATCTCAGAATAAATTCAAATATTACATTGCCAGACTGAAAGCAAAGTCAATAATCCGTAACTCTGGAGCAACTACTTCGTTCTTGACAAGAGATGCTATCAAGCAGATTACTTTAGCCCTTGGAATGAATAGTTCCTTTTCCAGAGGATTTGATAAGATTCTGAACATGCTCCTGGCTAGTTTAAGAGAGAACGCTCCCAACATTAGGGCTAAAGCTTTGCGAGCAGTTAGTATAATTGTTGAAGCTGATCCAGAGGTACTGTGTGATAAGCGTGTTCAGTTGGCTGTTGAGGGAAGGTTTTGTGATTCTGCAATATCTGTTAGAGAAGCAGCACTGGAACTTGTTGGTAGGCATATTGCATCACATCCTGATGTTGGTATAAAGTACTTTGAGAAGGTCGCTGAGAGGATTAAGGATACTGGAGTGAGTGTTCGAAAACGAGCCATCAAGATAATACGTGACATGTGTACTTCAAATCCCAACTTCTCTGAATTTACAAGTGCGTGCGCTGAGATATTATCTCGTATCAGTGATGATGAGTCTAGTGTTCAGGATCTTGTGTGCAAAACTTTCTATGAATTTTGGTTTGAGGAACCTCCAGGGCATCATACTCAGTTTGCTAGTGATGCTAGCTCCATTCCACTGGAACTGGAGAAGAAAACCAAGCAAATGGTAGGGTTGTTAAGCAGGACCCCAAATCAACAGCTGCTTGTAACAATTATTAAGCGTGCCCTGGCCCTGGATTTTTTTCCTCAAGCAGCTAAAGCTGCTGGTATTAACCCAGTTGCTCTTGCATCAGTACGCAGGCGCTGCGAGCTGATGTGCAAGTGCTTACTGGAAAAAATATTACAGGTAGAAGAAATGAGCCGTGAAGAAGGAGAGGTGCAAGTACTTCCTTATGTACTTGTTTTGCATGCTTTCTGTCTGGTGGATCCTGGGCTGTGTACACCGGCTTCAGACCCTACTAAGTTTGTCATCACCCTACAGCCATATCTGAAGAGTCAGGCTGATAGTAGAACAGGAGCACAGTTACTGGAGAGTATTATTTTCATTATCGATTCTGTCCTACCCTTGATCCGCAAGCTGCCTCTAAGTGTCACAGAAGATCTGGAACAGGATCTAAAGCATATGATTGTTCGGCATTCGTTTCTAACTGTTGTGCATGCTTGCGTTAGGTGTCTTTGTTCTGTGAGTAAATTGGCGGGGAAAGGTGTTAGCATAGTTGAGCATCTTCTTCAGTTCTTTTTTAAGCGGCTGGAGGCCCAAGGTTCCGATAACACACAGATTGCTGGGCGGTCCCTTTTTTGTCTTGGCTTGCTTATTCGCCATGGAAACTCTCTTATTAGTACCTCAGGTGGCAAGAATTTCAATCTCTCTGGCTGTCTTAATTTGTTTAAACGACATCTCCGAACGGAAGATATTGCTTTGAAAGTCAGGTCGCTGCAGGCTTTAGGATTCATCCTAATTGCACGACCTGAGTACATGTTGGAAGAAGACATTGGAAAGATAATCGAGACTACATTAGCAGATGAAGCAAATGGGCGTATGAAGATGCAAGCATTACAAAACATGTATGAATACCTTCTTGATGCGGAAAAACAATTGGGATCAGAGAAAGCCAGTGATAACACGGTTAACTCAGTTGAACAAGGTGGCCATAATGTACCTGTGGCCGCTGGTGCAGGTGACACCAACATTTGCGGAGGCATTGTGCAGTTGTTTTGGGATAAAATATTAGGTAGATGCTTGGACTTTGATGATCAAATTCGCCAGACCTCTCTCAAGATAGTGGAAGTTGTACTACGTCAAGGCCTAGTGCATCCTATTACGTGTGTTCCTTATTTGATTGCCCTCGAGACAGATCCTCAAGAGGCCAACCAAAAGCTGGCCCATCATTTACTAATGAATATGCATGAGAAGTATCCGGCTTTTTTTGAGAGCCGTCTTGGTGACGGACTTCAAATGTCGTTTATCTTCATGCAATCCATCAGCCAGGTCACTTCAGAACCAAATCAAAGTCTTCAGCAAAAGGGTTCAACAAACATGTTGGGCAAAAATGATCATGCTAGTAGTACTCTCACCCAAGCTAGACTTGGAGTCTCTAGGATCTACAAGCTTATCCGTGGAAACCGGGTTTCTCGAAACAAATTTATGACTTCGATTGTTCGCAAGTTTGATAATCCAACCTGGAATGGCTCAGTAATATCGTTTCTGAAGTATTGCACTGAAACCCTTGCTTTACTTCCATTCACATCACCTGATGAACCACTCTATCTTGTATATTCCATAAACCGAGTTATGCAGATTCGGGCTGGAGCAGTTGAGTCAAATTTGAAGGCTTTGTTACATAAAGATTCCGCAAAGACTCAGCATGGAAATGGAGCATACCAACAAGATCCGATTCCCGGACATATGAACATGATGGATCTAAACACAAGAATCCAAGAAGAACCAAGACATTGGAATTCCTATGGCCATGCAACTCTAATTGACCTCAATGGATCAGTATACCAAGATTCAAGGGATCAGTTCACTTCATATCAAGTCCATAATGGGAAAGCAGATGTGCACAAGATGACCTCATCTGATCCTCCTGAATTATCCACTGATGATCTGCAGAAAATTCAGGTTGATTGCTTAGCAGCTATAGCTATACAACTTCTTTTGAAGCTCAAGAGATACCTAAAAGTCACGTACAGCTTAAATGATGACCGGTGCCAAGCCTATTCTCCAACGGAACCATTGAAGCCAGGAGATCCTCTCTCCAGACAAAGCGTTGCCTTTGACCTCAGCGAAACTCGCACTGACTTACCTTCAACATATCAAGACTTAGTTCAGAGATATCAGGAGTTTAAGAACGCAATGAGAGAAGATACGGTTGACTTCACCATCTATTCAACAAACGTCAAGAGAAAACGCCCAACGCCAAGGAAAACTTCAAGATCTGCTAAAAAAACAGTGGCCTACAACGAAGATGATGATGATGACGACAATGATGACAGAGGATGGCATGGAGGAGGAGGAAGAGGAGCTGCTCGGAGACTAAATTACAGCACCAGAAGTAGCAACAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0003006 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0034508 GO:0034622 GO:0043933 GO:0044085 GO:0045132 GO:0045144 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051177 GO:0051276 GO:0051321 GO:0061458 GO:0061983 GO:0065003 GO:0065004 GO:0070192 GO:0071824 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

1846

Amino Acids

206.76

Weight (kDa)

6.48

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	702 - 745	2.7e-06	PHD-finger
PDS5	PF20168	852 - 1018	7.7e-08	Sister chromatid cohesion protein PDS5 protein
Cohesin_HEAT	PF12765	895 - 936	5.9e-13	HEAT repeat associated with sister chromatid cohesion
Nipped-B_C	PF12830	1388 - 1587	3.1e-51	Sister chromatid cohesion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15540 AT5G15540
fragaria_vesca	FvH4_6g47080 FvH4_6g47080 FvH4_6g47080
malus_domestica	MD09G1064300.v1.1 MD17G1057600.v1.1
prunus_persica	Prupe.3G256700_v2.0.a1
pyrus_communis	pycom111g05400 pycom17g05770
rosa_chinensis	RchiOBHm_Chr2g0166131
rosa_laevigata	RLG00000021588
rosa_multiflora	Rmu_sc0006218.1_g000028
rosa_roxburghii	Rroxscaffold_2G00085180
rosa_rugosa	Rorug02G0520500 Rorug02G0520600
rosa_samantha	Rh2AG586600 Rh2BG598400 Rh2CG569100 Rh2DG608300
rosa_wichuraiana	Rw2G048900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	839, 1482
AarI	CACCTGC	1 cut(s)	4136
AasI	GACNNNNNNGTC	2 cut(s)	571, 859
Acc16I	TGCGCA	1 cut(s)	914
Acc36I	ACCTGC	2 cut(s)	395, 4136
Acc65I	GGTACC	1 cut(s)	883
AccB1I	GGYRCC	5 cut(s)	292, 883, 1001, 1107, 5178
AccB7I	CCANNNNNTGG	2 cut(s)	1117, 4348
AccI	GTMKAC	1 cut(s)	4971
AccII	CGCG	1 cut(s)	218
AcoI	YGGCCR	7 cut(s)	135, 172, 1038, 1974, 4117, 4134, 4936
AcuI	CTGAAG	8 cut(s)	789, 2366, 3402, 3479, 3683, 4449, 4469, 4697
AcyI	GRCGYC	2 cut(s)	293, 1277
AfiI	CCNNNNNNNGG	9 cut(s)	411, 1117, 1239, 1360, 2667, 2837, 3202, 4348, 4868
AflIII	ACRYGT	6 cut(s)	1754, 2925, 3945, 4032, 4292, 4506
AgeI	ACCGGT	1 cut(s)	5175
AhdI	GACNNNNNGTC	2 cut(s)	1225, 4559
AjuI	GAANNNNNNNTTGG	4 cut(s)	3945, 3977, 5383, 5415
AloI	GAACNNNNNNTCC	2 cut(s)	2877, 2909
Alw21I	GWGCWC	2 cut(s)	3490, 5034
Alw26I	GTCTC	9 cut(s)	245, 1663, 1694, 1899, 1963, 3971, 4313, 4567, 5497
Alw44I	GTGCAC	1 cut(s)	5030
AlwNI	CAGNNNCTG	3 cut(s)	2046, 3273, 3496
Ama87I	CYCGRG	2 cut(s)	1666, 4316
ApaLI	GTGCAC	1 cut(s)	5030
AsiGI	ACCGGT	1 cut(s)	5175
Asp700I	GAANNNNTTC	2 cut(s)	2474, 4044
Asp718I	GGTACC	1 cut(s)	883
AspLEI	GCGC	6 cut(s)	220, 295, 915, 1248, 2972, 3273
AspS9I	GGNCC	8 cut(s)	380, 413, 1351, 3153, 3199, 3724, 3759, 4351
AsuC2I	CCSGG	3 cut(s)	378, 4595, 4869
AsuII	TTCGAA	1 cut(s)	2896
AsuNHI	GCTAGC	2 cut(s)	1027, 3092
AvaI	CYCGRG	2 cut(s)	1666, 4316
AvaII	GGWCC	4 cut(s)	380, 1351, 3153, 3759
AxyI	CCTNAGG	1 cut(s)	3814
BaeGI	GKGCMC	4 cut(s)	816, 1006, 3196, 5034
BaeI	ACNNNNGTAYC	2 cut(s)	2871, 2904
BalI	TGGCCA	5 cut(s)	174, 1040, 1976, 4119, 4938
BamHI	GGATCC	1 cut(s)	3394
BanI	GGYRCC	5 cut(s)	292, 883, 1001, 1107, 5178
BarI	GAAGNNNNNNTAC	4 cut(s)	3400, 3432, 4248, 4280
BauI	CACGAG	1 cut(s)	1773
BbsI	GAAGAC	3 cut(s)	1409, 3963, 4475
Bbv12I	GWGCWC	2 cut(s)	3490, 5034
BbvCI	CCTCAGC	1 cut(s)	5252
BceAI	ACGGC	2 cut(s)	3315, 4389
BcgI	CGANNNNNNTGC	2 cut(s)	2520, 2554
BciVI	GTATCC	3 cut(s)	463, 2872, 4395
BclI	TGATCA	3 cut(s)	2083, 4222, 4522
BcnI	CCSGG	3 cut(s)	378, 4595, 4869
BcoDI	GTCTC	9 cut(s)	245, 1663, 1694, 1899, 1963, 3971, 4313, 4567, 5497
BfmI	CTRYAG	9 cut(s)	187, 1316, 1746, 2029, 2261, 3446, 3905, 5078, 5109
BfoI	RGCGCY	2 cut(s)	296, 3274
BfuAI	ACCTGC	2 cut(s)	395, 4136
BfuI	GTATCC	3 cut(s)	463, 2872, 4395
BglII	AGATCT	2 cut(s)	3568, 5405
BlpI	GCTNAGC	1 cut(s)	5101
BmcAI	AGTACT	3 cut(s)	2849, 3354, 4537
Bme18I	GGWCC	4 cut(s)	380, 1351, 3153, 3759
BmeRI	GACNNNNNGTC	2 cut(s)	1225, 4559
BmeT110I	CYCGRG	2 cut(s)	1666, 4316
BmgT120I	GGNCC	8 cut(s)	380, 413, 1351, 3153, 3199, 3724, 3759, 4351
BmrI	ACTGGG	1 cut(s)	3239
BmtI	GCTAGC	2 cut(s)	1031, 3096
BmuI	ACTGGG	1 cut(s)	3239
BoxI	GACNNNNGTC	1 cut(s)	1775
BpiI	GAAGAC	3 cut(s)	1409, 3963, 4475
BplI	GAGNNNNNCTC	2 cut(s)	5208, 5240
Bpu10I	CCTNAGC	1 cut(s)	5252
Bpu1102I	GCTNAGC	1 cut(s)	5101
Bpu14I	TTCGAA	1 cut(s)	2896
BpuEI	CTTGAG	7 cut(s)	1028, 1331, 1925, 3201, 4229, 4314, 5120
BpuMI	CCSGG	3 cut(s)	378, 4595, 4869
Bsa29I	ATCGAT	1 cut(s)	3519
BsaAI	YACGTR	3 cut(s)	2921, 4293, 5157
BsaBI	GATNNNNATC	1 cut(s)	1206
BsaHI	GRCGYC	2 cut(s)	293, 1277
BsaI	GGTCTC	1 cut(s)	1694
BsaWI	WCCGGW	1 cut(s)	5175
BsaXI	ACNNNNNCTCC	6 cut(s)	2877, 2907, 3852, 3882, 4158, 4188
Bsc4I	CCNNNNNNNGG	9 cut(s)	411, 1117, 1239, 1360, 2667, 2837, 3202, 4348, 4868
Bse118I	RCCGGY	3 cut(s)	1165, 3412, 5175
Bse21I	CCTNAGG	1 cut(s)	3814
Bse3DI	GCAATG	2 cut(s)	2487, 5331
Bse8I	GATNNNNATC	1 cut(s)	1206
BseCI	ATCGAT	1 cut(s)	3519
BseGI	GGATG	6 cut(s)	796, 2392, 2827, 3921, 4282, 5474
BseJI	GATNNNNATC	1 cut(s)	1206
BseLI	CCNNNNNNNGG	9 cut(s)	411, 1117, 1239, 1360, 2667, 2837, 3202, 4348, 4868
BseMI	GCAATG	2 cut(s)	2487, 5331
BseRI	GAGGAG	4 cut(s)	1088, 5493, 5496, 5505
BseSI	GKGCMC	4 cut(s)	816, 1006, 3196, 5034
BseX3I	CGGCCG	1 cut(s)	135
BseYI	CCCAGC	2 cut(s)	2129, 3752
BsgI	GTGCAG	3 cut(s)	1296, 4164, 4196
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	138
BshNI	GGYRCC	5 cut(s)	292, 883, 1001, 1107, 5178
BshTI	ACCGGT	1 cut(s)	5175
BshVI	ATCGAT	1 cut(s)	3519
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	3490, 5034
BsiHKCI	CYCGRG	2 cut(s)	1666, 4316
BsiSI	CCGG	8 cut(s)	21, 378, 1166, 3413, 4388, 4594, 4869, 5176
BslFI	GGGAC	3 cut(s)	758, 2441, 3745
BslI	CCNNNNNNNGG	9 cut(s)	411, 1117, 1239, 1360, 2667, 2837, 3202, 4348, 4868
BsmAI	GTCTC	9 cut(s)	245, 1663, 1694, 1899, 1963, 3971, 4313, 4567, 5497
BsmFI	GGGAC	3 cut(s)	758, 2441, 3745
BsmI	GAATGC	1 cut(s)	3604
Bso31I	GGTCTC	1 cut(s)	1694
BsoBI	CYCGRG	2 cut(s)	1666, 4316
Bsp119I	TTCGAA	1 cut(s)	2896
Bsp1286I	GDGCHC	5 cut(s)	816, 1006, 3196, 3490, 5034
Bsp1407I	TGTACA	1 cut(s)	3407
Bsp1720I	GCTNAGC	1 cut(s)	5101
Bsp19I	CCATGG	1 cut(s)	3790
BspDI	ATCGAT	1 cut(s)	3519
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	3 cut(s)	247, 1216, 1735
BspMAI	CTGCAG	3 cut(s)	2033, 3909, 5082
BspMI	ACCTGC	2 cut(s)	395, 4136
BspOI	GCTAGC	2 cut(s)	1031, 3096
BspT104I	TTCGAA	1 cut(s)	2896
BspT107I	GGYRCC	5 cut(s)	292, 883, 1001, 1107, 5178
BspTNI	GGTCTC	1 cut(s)	1694
BsrDI	GCAATG	2 cut(s)	2487, 5331
BsrFI	RCCGGY	3 cut(s)	1165, 3412, 5175
BsrGI	TGTACA	1 cut(s)	3407
BssAI	RCCGGY	3 cut(s)	1165, 3412, 5175
BssNAI	GTATAC	1 cut(s)	4972
BssNI	GRCGYC	2 cut(s)	293, 1277
BssSI	CACGAG	1 cut(s)	1773
BssT1I	CCWWGG	6 cut(s)	175, 2286, 2581, 3727, 3790, 5390
Bst1107I	GTATAC	1 cut(s)	4972
Bst2BI	CACGAG	1 cut(s)	1773
Bst6I	CTCTTC	3 cut(s)	1769, 3455, 5482
BstACI	GRCGYC	2 cut(s)	293, 1277
BstAPI	GCANNNNNTGC	2 cut(s)	2365, 3273
BstAUI	TGTACA	1 cut(s)	3407
BstBAI	YACGTR	3 cut(s)	2921, 4293, 5157
BstBI	TTCGAA	1 cut(s)	2896
BstDSI	CCRYGG	2 cut(s)	3790, 4585
BstF5I	GGATG	6 cut(s)	796, 2392, 2827, 3921, 4282, 5474
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	2 cut(s)	296, 3274
BstHHI	GCGC	6 cut(s)	220, 295, 915, 1248, 2972, 3273
BstMAI	GTCTC	9 cut(s)	245, 1663, 1694, 1899, 1963, 3971, 4313, 4567, 5497
BstMCI	CGRYCG	1 cut(s)	138
BstNSI	RCATGY	8 cut(s)	1758, 2632, 2929, 3380, 3629, 3949, 4036, 4510
BstPAI	GACNNNNGTC	1 cut(s)	1775
BstSFI	CTRYAG	9 cut(s)	187, 1316, 1746, 2029, 2261, 3446, 3905, 5078, 5109
BstSLI	GKGCMC	4 cut(s)	816, 1006, 3196, 5034
BstUI	CGCG	1 cut(s)	218
BstV2I	GAAGAC	3 cut(s)	1409, 3963, 4475
BstXI	CCANNNNNNTGG	4 cut(s)	182, 3106, 3133, 4923
BstZ17I	GTATAC	1 cut(s)	4972
BstZI	CGGCCG	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	3519
Bsu36I	CCTNAGG	1 cut(s)	3814
BsuI	GTATCC	3 cut(s)	463, 2872, 4395
BsuTUI	ATCGAT	1 cut(s)	3519
BtgI	CCRYGG	2 cut(s)	3790, 4585
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	6 cut(s)	796, 2392, 2827, 3921, 4282, 5474
BtsI	GCAGTG	3 cut(s)	211, 1038, 1614
BveI	ACCTGC	2 cut(s)	395, 4136
CaiI	CAGNNNCTG	3 cut(s)	2046, 3273, 3496
CciI	TCATGA	3 cut(s)	247, 1216, 1735
CfoI	GCGC	6 cut(s)	220, 295, 915, 1248, 2972, 3273
Cfr10I	RCCGGY	3 cut(s)	1165, 3412, 5175
Cfr13I	GGNCC	8 cut(s)	380, 413, 1351, 3153, 3199, 3724, 3759, 4351
ClaI	ATCGAT	1 cut(s)	3519
CpoI	CGGWCCG	1 cut(s)	380
CseI	GACGC	2 cut(s)	1266, 1820
CspAI	ACCGGT	1 cut(s)	5175
CspI	CGGWCCG	1 cut(s)	380
DinI	GGCGCC	1 cut(s)	294
DraI	TTTAAA	2 cut(s)	2190, 3859
DrdI	GACNNNNNNGTC	2 cut(s)	571, 859
DriI	GACNNNNNGTC	2 cut(s)	1225, 4559
DseDI	GACNNNNNNGTC	2 cut(s)	571, 859
EaeI	YGGCCR	7 cut(s)	135, 172, 1038, 1974, 4117, 4134, 4936
EagI	CGGCCG	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	1769, 3455, 5482
Eam1105I	GACNNNNNGTC	2 cut(s)	1225, 4559
EarI	CTCTTC	3 cut(s)	1769, 3455, 5482
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	6 cut(s)	175, 2286, 2581, 3727, 3790, 5390
Eco147I	AGGCCT	1 cut(s)	4275
Eco31I	GGTCTC	1 cut(s)	1694
Eco32I	GATATC	1 cut(s)	5306
Eco47I	GGWCC	4 cut(s)	380, 1351, 3153, 3759
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	8 cut(s)	789, 2366, 3402, 3479, 3683, 4449, 4469, 4697
Eco81I	CCTNAGG	1 cut(s)	3814
Eco88I	CYCGRG	2 cut(s)	1666, 4316
EcoO109I	RGGNCCY	3 cut(s)	413, 1351, 3153
EcoRI	GAATTC	2 cut(s)	1089, 4927
EcoRV	GATATC	1 cut(s)	5306
EcoT14I	CCWWGG	6 cut(s)	175, 2286, 2581, 3727, 3790, 5390
EcoT22I	ATGCAT	2 cut(s)	1024, 4377
EgeI	GGCGCC	1 cut(s)	294
EheI	GGCGCC	1 cut(s)	294
ErhI	CCWWGG	6 cut(s)	175, 2286, 2581, 3727, 3790, 5390
FalI	AAGNNNNNCTT	4 cut(s)	4539, 4571, 5383, 5415
FaqI	GGGAC	3 cut(s)	758, 2441, 3745
FauI	CCCGC	1 cut(s)	3658
FauNDI	CATATG	5 cut(s)	595, 879, 1507, 3591, 4875
FbaI	TGATCA	3 cut(s)	2083, 4222, 4522
FblI	GTMKAC	1 cut(s)	4971
FokI	GGATG	6 cut(s)	803, 2399, 2814, 3908, 4269, 5481
FspI	TGCGCA	1 cut(s)	914
GlaI	GCGC	6 cut(s)	219, 294, 914, 1247, 2971, 3272
GsaI	CCCAGC	2 cut(s)	2133, 3756
HaeII	RGCGCY	2 cut(s)	296, 3274
HapII	CCGG	8 cut(s)	21, 378, 1166, 3413, 4388, 4594, 4869, 5176
HgaI	GACGC	2 cut(s)	1266, 1820
HhaI	GCGC	6 cut(s)	220, 295, 915, 1248, 2972, 3273
Hin1I	GRCGYC	2 cut(s)	293, 1277
Hin6I	GCGC	6 cut(s)	218, 293, 913, 1246, 2970, 3271
HinP1I	GCGC	6 cut(s)	218, 293, 913, 1246, 2970, 3271
HincII	GTYRAC	2 cut(s)	4099, 5344
HindII	GTYRAC	2 cut(s)	4099, 5344
HindIII	AAGCTT	2 cut(s)	2676, 4577
HpaI	GTTAAC	1 cut(s)	4099
HpaII	CCGG	8 cut(s)	21, 378, 1166, 3413, 4388, 4594, 4869, 5176
Hpy99I	CGWCG	1 cut(s)	115
HpyCH4IV	ACGT	9 cut(s)	258, 667, 2014, 2051, 2920, 4267, 4292, 5156, 5367
HpySE526I	ACGT	9 cut(s)	258, 667, 2014, 2051, 2920, 4267, 4292, 5156, 5367
Hsp92I	GRCGYC	2 cut(s)	293, 1277
HspAI	GCGC	6 cut(s)	218, 293, 913, 1246, 2970, 3271
KasI	GGCGCC	1 cut(s)	292
KpnI	GGTACC	1 cut(s)	887
Ksp22I	TGATCA	3 cut(s)	2083, 4222, 4522
KspAI	GTTAAC	1 cut(s)	4099
MaeII	ACGT	9 cut(s)	258, 667, 2014, 2051, 2920, 4267, 4292, 5156, 5367
MfeI	CAATTG	2 cut(s)	1529, 4064
MhlI	GDGCHC	5 cut(s)	816, 1006, 3196, 3490, 5034
MlsI	TGGCCA	5 cut(s)	174, 1040, 1976, 4119, 4938
MluNI	TGGCCA	5 cut(s)	174, 1040, 1976, 4119, 4938
Mly113I	GGCGCC	1 cut(s)	293
MmeI	TCCRAC	8 cut(s)	63, 177, 407, 726, 2283, 3930, 4670, 5219
Mox20I	TGGCCA	5 cut(s)	174, 1040, 1976, 4119, 4938
Mph1103I	ATGCAT	2 cut(s)	1024, 4377
MroXI	GAANNNNTTC	2 cut(s)	2474, 4044
MscI	TGGCCA	5 cut(s)	174, 1040, 1976, 4119, 4938
MslI	CAYNNNNRTG	2 cut(s)	2832, 4839
Msp20I	TGGCCA	5 cut(s)	174, 1040, 1976, 4119, 4938
MspA1I	CMGCKG	3 cut(s)	2399, 3169, 4139
MspI	CCGG	8 cut(s)	21, 378, 1166, 3413, 4388, 4594, 4869, 5176
MssI	GTTTAAAC	1 cut(s)	3859
MunI	CAATTG	2 cut(s)	1529, 4064
Mva1269I	GAATGC	1 cut(s)	3604
MvnI	CGCG	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	293
NciI	CCSGG	3 cut(s)	378, 4595, 4869
NcoI	CCATGG	1 cut(s)	3790
NdeI	CATATG	5 cut(s)	595, 879, 1507, 3591, 4875
NheI	GCTAGC	2 cut(s)	1027, 3092
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	9 cut(s)	573, 1612, 2174, 2921, 3559, 4148, 4412, 4459, 5152
NsbI	TGCGCA	1 cut(s)	914
NsiI	ATGCAT	2 cut(s)	1024, 4377
NspI	RCATGY	8 cut(s)	1758, 2632, 2929, 3380, 3629, 3949, 4036, 4510
NspV	TTCGAA	1 cut(s)	2896
PaeI	GCATGC	2 cut(s)	3380, 3629
PaeR7I	CTCGAG	2 cut(s)	1666, 4316
PagI	TCATGA	3 cut(s)	247, 1216, 1735
PaqCI	CACCTGC	1 cut(s)	4136
PceI	AGGCCT	1 cut(s)	4275
PciI	ACATGT	5 cut(s)	1754, 2925, 3945, 4032, 4506
PcsI	WCGNNNNNNNCGW	1 cut(s)	3868
PctI	GAATGC	1 cut(s)	3604
PdmI	GAANNNNTTC	2 cut(s)	2474, 4044
PflMI	CCANNNNNTGG	2 cut(s)	1117, 4348
PfoI	TCCNGGA	2 cut(s)	352, 4867
PinAI	ACCGGT	1 cut(s)	5175
PluTI	GGCGCC	1 cut(s)	296
PmeI	GTTTAAAC	1 cut(s)	3859
Ppu21I	YACGTR	3 cut(s)	2921, 4293, 5157
PpuMI	RGGWCCY	2 cut(s)	1351, 3153
PscI	ACATGT	5 cut(s)	1754, 2925, 3945, 4032, 4506
PshAI	GACNNNNGTC	1 cut(s)	1775
PsiI	TTATAA	2 cut(s)	839, 1482
Psp5II	RGGWCCY	2 cut(s)	1351, 3153
PspFI	CCCAGC	2 cut(s)	2129, 3752
PspPI	GGNCC	8 cut(s)	380, 413, 1351, 3153, 3199, 3724, 3759, 4351
PspPPI	RGGWCCY	2 cut(s)	1351, 3153
PstI	CTGCAG	3 cut(s)	2033, 3909, 5082
PstNI	CAGNNNCTG	3 cut(s)	2046, 3273, 3496
PvuII	CAGCTG	2 cut(s)	2399, 3169
RseI	CAYNNNNRTG	2 cut(s)	2832, 4839
Rsr2I	CGGWCCG	1 cut(s)	380
RsrII	CGGWCCG	1 cut(s)	380
Sau96I	GGNCC	8 cut(s)	380, 413, 1351, 3153, 3199, 3724, 3759, 4351
ScaI	AGTACT	3 cut(s)	2849, 3354, 4537
SduI	GDGCHC	5 cut(s)	816, 1006, 3196, 3490, 5034
SfcI	CTRYAG	9 cut(s)	187, 1316, 1746, 2029, 2261, 3446, 3905, 5078, 5109
SfoI	GGCGCC	1 cut(s)	294
Sfr274I	CTCGAG	2 cut(s)	1666, 4316
SfuI	TTCGAA	1 cut(s)	2896
SinI	GGWCC	4 cut(s)	380, 1351, 3153, 3759
SlaI	CTCGAG	2 cut(s)	1666, 4316
SmiMI	CAYNNNNRTG	2 cut(s)	2832, 4839
SmlI	CTYRAG	9 cut(s)	1007, 1346, 1666, 1904, 3216, 4244, 4316, 4329, 5135
SmoI	CTYRAG	9 cut(s)	1007, 1346, 1666, 1904, 3216, 4244, 4316, 4329, 5135
SphI	GCATGC	2 cut(s)	3380, 3629
SseBI	AGGCCT	1 cut(s)	4275
SspDI	GGCGCC	1 cut(s)	292
SspI	AATATT	3 cut(s)	2483, 3309, 4197
StuI	AGGCCT	1 cut(s)	4275
StyI	CCWWGG	6 cut(s)	175, 2286, 2581, 3727, 3790, 5390
TaiI	ACGT	9 cut(s)	261, 670, 2017, 2054, 2923, 4270, 4295, 5159, 5370
TaqII	GACCGA	1 cut(s)	2363
TatI	WGTACW	9 cut(s)	2257, 2847, 2930, 3352, 3364, 3407, 3942, 4261, 4535
TauI	GCSGC	6 cut(s)	106, 137, 1246, 1745, 3718, 4139
TseFI	GTSAC	9 cut(s)	573, 1612, 2174, 2921, 3559, 4148, 4412, 4459, 5152
Tsp45I	GTSAC	9 cut(s)	573, 1612, 2174, 2921, 3559, 4148, 4412, 4459, 5152
TspGWI	ACGGA	7 cut(s)	482, 1875, 2507, 3890, 4431, 4574, 5213
Van91I	CCANNNNNTGG	2 cut(s)	1117, 4348
VneI	GTGCAC	1 cut(s)	5030
VpaK11BI	GGWCC	4 cut(s)	380, 1351, 3153, 3759
XceI	RCATGY	8 cut(s)	1758, 2632, 2929, 3380, 3629, 3949, 4036, 4510
XcmI	CCANNNNNNNNNTGG	2 cut(s)	4345, 4553
XhoI	CTCGAG	2 cut(s)	1666, 4316
XmiI	GTMKAC	1 cut(s)	4971
XmnI	GAANNNNTTC	2 cut(s)	2474, 4044
ZrmI	AGTACT	3 cut(s)	2849, 3354, 4537
Zsp2I	ATGCAT	2 cut(s)	1024, 4377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.