Rorug02G0520600

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010273
Physical Location & Seq
Forward (+)
65240829 .. 65242443
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0520600.1

Sequence Viewer

Length: 1236 bp
ATGTTGGATAATGACGATGCAATGAAATTGTTTAGTCATTCAGCATCATTGAATGATAAGAGCTCTCATATTCCAGCACATCTTTCAAGAAAGATAGTAGAGCGTTGTAAGGGATTTCCACTTGCCATTACAGTGGTGGGCAGATCGCTTTGTGCACAACCTATAGAGATGTGGCTAGACAGACTAAATCAATGGTCTAAAGGTTCATCTATTTTTGATTCTGAGACTGATCTACTTTTTTCCCTCCAAAGCAGCTTAGATGCTTTGGATAAGGAAAGGGCTATCATCAGAGAATGTTTCTTGGACCTTGGTTCATTTCCTGAAGACAAAGAAATCCCCGTTGATGCCCTCATTGATATATGGTCCGAGTTATATGAAATTGATGAAGACACTTCATGTATTGCAAACCTCTATGAACTCAACAATCGGAGTCTTGCTAATCTTATAGACAACATGTATTTATGTATGTTTCTGTTGCATGGAATCAAGTTGGATGGGGAAGGATATTATGGTGACCTCTATGTCACCCAACATGATGTGCTTAGGGAGCTGGCTATTTATCACTCAAAAATAGATTCGGTAGAGCATAGAGAGAGATTGATCATAGACATATGTGGAAGCAATCTTCCCAAGTGGTGGAGGGAACAAAAGTATCAAGTTATGAAAGCTCGCCTTCTATCTATATCAACAGATGGAGAGTCTTCAACTTCGAAATGGCCCAGCATGCATCTGCCAGAAACAGAGGTACTGCTCTTGAATCTTCGGGAGAGAGAGCATGCTATAGCCGAATTTGTGGAGAAAATGGACAAATTGAAGGTACTAGTAATCACAAGTGAGGATTTCAGGTATAGTGCTTCCTTGCATAATTTTCAAGTACTAAGTCGGGTATCCAATCTAAAGAGAATCAGATTAGAGCGCATCTCAATTTCATCCATATTCAAGAACTCCATACAAGTGAAGAGTCTACGGAAGCTGTCTTTGATCAAATGTTATTACGGATTCAGTTCAGCCAAACTTTCCCATGCTTTTCCAAATCTAGAAGAGATATACATCGAATACGCTACAATAACACTTCACTCGTCAAGGGCTACTGAGGCAGTACTTAGCAAGACAGTACTTTGCGGGCTATGTGATCTGATTTCCCTAAAGAAGGTCACCCTCACAGGTGTTCGAGGACTTTTATTATCGGCTTTCCTTGACGAGATTGAAAATTTGGTCAATTACTGCCAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

411

Amino Acids

47.01

Weight (kDa)

5.7

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15540 AT5G15540
fragaria_vesca FvH4_6g47080 FvH4_6g47080 FvH4_6g47080
malus_domestica MD09G1064300.v1.1 MD17G1057600.v1.1
prunus_persica Prupe.3G256700_v2.0.a1
pyrus_communis pycom111g05400 pycom17g05770
rosa_chinensis RchiOBHm_Chr2g0166131
rosa_laevigata RLG00000021588
rosa_multiflora Rmu_sc0006218.1_g000028
rosa_roxburghii Rroxscaffold_2G00085180
rosa_rugosa Rorug02G0520500 Rorug02G0520600
rosa_samantha Rh2AG586600 Rh2BG598400 Rh2CG569100 Rh2DG608300
rosa_wichuraiana Rw2G048900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 636
AccI GTMKAC 1 cut(s) 964
AciI CCGC 1 cut(s) 1122
AcsI RAATTY 2 cut(s) 788, 1210
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 5 cut(s) 747, 819, 876, 1101, 1116
AfiI CCNNNNNNNGG 2 cut(s) 636, 1150
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 8 cut(s) 52, 87, 705, 757, 814, 872, 940, 1208
AhlI ACTAGT 1 cut(s) 820
AluBI AGCT 5 cut(s) 63, 255, 550, 668, 973
AluI AGCT 5 cut(s) 63, 255, 550, 668, 973
Alw21I GWGCWC 2 cut(s) 65, 157
Alw26I GTCTC 1 cut(s) 218
Alw44I GTGCAC 1 cut(s) 153
AoxI GGCC 1 cut(s) 716
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 2 cut(s) 788, 1210
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 3 cut(s) 304, 363, 717
AsuHPI GGTGA 3 cut(s) 517, 524, 1147
AsuII TTCGAA 1 cut(s) 710
AvaII GGWCC 2 cut(s) 304, 363
BaeGI GKGCMC 1 cut(s) 157
BaeI ACNNNNGTAYC 2 cut(s) 635, 668
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 3 cut(s) 330, 393, 693
Bbv12I GWGCWC 2 cut(s) 65, 157
BbvI GCAGC 1 cut(s) 264
BccI CCATC 2 cut(s) 488, 686
BciVI GTATCC 1 cut(s) 898
BclI TGATCA 2 cut(s) 600, 981
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 820
BfaI CTAG 3 cut(s) 176, 821, 1037
BfmI CTRYAG 2 cut(s) 162, 780
BfuI GTATCC 1 cut(s) 898
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BmcAI AGTACT 3 cut(s) 876, 1101, 1116
Bme18I GGWCC 2 cut(s) 304, 363
BmgT120I GGNCC 3 cut(s) 304, 363, 717
BmsI GCATC 6 cut(s) 7, 53, 250, 334, 736, 927
BpiI GAAGAC 3 cut(s) 330, 393, 693
BplI GAGNNNNNCTC 2 cut(s) 905, 937
Bpu10I CCTNAGC 1 cut(s) 542
Bpu14I TTCGAA 1 cut(s) 710
BsaBI GATNNNNATC 1 cut(s) 1049
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 636, 1150
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 1049
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 499, 929
BseJI GATNNNNATC 1 cut(s) 1049
BseLI CCNNNNNNNGG 2 cut(s) 636, 1150
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 213, 1083
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 264
BseYI CCCAGC 1 cut(s) 719
BshFI GGCC 1 cut(s) 718
BsiHKAI GWGCWC 2 cut(s) 65, 157
BslI CCNNNNNNNGG 2 cut(s) 636, 1150
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 718
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 65, 157
Bsp143I GATC 5 cut(s) 143, 229, 600, 981, 1132
BspACI CCGC 1 cut(s) 1122
BspANI GGCC 1 cut(s) 718
BspCNI CTCAG 2 cut(s) 214, 1084
BspT104I TTCGAA 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 5 cut(s) 143, 229, 600, 981, 1132
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 133, 1114
Bst6I CTCTTC 2 cut(s) 953, 1035
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 5 cut(s) 552, 670, 725, 777, 1124
BstDEI CTNAG 6 cut(s) 222, 256, 542, 878, 1092, 1103
BstEII GGTNACC 2 cut(s) 512, 1153
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 2 cut(s) 499, 929
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 5 cut(s) 146, 232, 603, 984, 1135
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 5 cut(s) 143, 229, 600, 981, 1132
BstMWI GCNNNNNNNGC 3 cut(s) 547, 724, 1094
BstNSI RCATGY 3 cut(s) 457, 727, 779
BstPI GGTNACC 2 cut(s) 512, 1153
BstSFI CTRYAG 2 cut(s) 162, 780
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 3 cut(s) 330, 393, 693
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 1 cut(s) 718
BtsCI GGATG 2 cut(s) 499, 929
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 5 cut(s) 552, 670, 725, 777, 1124
CfoI GCGC 1 cut(s) 918
Cfr13I GGNCC 3 cut(s) 304, 363, 717
Csp6I GTAC 5 cut(s) 746, 818, 875, 1100, 1115
CviAII CATG 7 cut(s) 396, 454, 479, 533, 724, 776, 1022
CviQI GTAC 5 cut(s) 746, 818, 875, 1100, 1115
DdeI CTNAG 6 cut(s) 222, 256, 542, 878, 1092, 1103
DpnI GATC 5 cut(s) 145, 231, 602, 983, 1134
DpnII GATC 5 cut(s) 143, 229, 600, 981, 1132
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 953, 1035
EarI CTCTTC 2 cut(s) 953, 1035
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 304, 363
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 342
Eco91I GGTNACC 2 cut(s) 512, 1153
EcoICRI GAGCTC 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoO65I GGTNACC 2 cut(s) 512, 1153
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 7 cut(s) 399, 457, 482, 536, 727, 779, 1025
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FatI CATG 7 cut(s) 395, 453, 478, 532, 723, 775, 1021
FauI CCCGC 1 cut(s) 1115
FauNDI CATATG 1 cut(s) 611
FbaI TGATCA 2 cut(s) 600, 981
FblI GTMKAC 1 cut(s) 964
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 2 cut(s) 506, 916
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 3 cut(s) 176, 821, 1037
GlaI GCGC 1 cut(s) 917
GluI GCNGC 1 cut(s) 253
GsaI CCCAGC 1 cut(s) 723
HaeIII GGCC 1 cut(s) 718
HhaI GCGC 1 cut(s) 918
Hin1II CATG 7 cut(s) 399, 457, 482, 536, 727, 779, 1025
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HinfI GANTC 9 cut(s) 218, 430, 483, 575, 698, 757, 903, 961, 999
HphI GGTGA 3 cut(s) 517, 524, 1147
Hpy166II GTNNAC 2 cut(s) 155, 965
Hpy188I TCNGA 6 cut(s) 223, 290, 367, 429, 908, 1137
Hpy188III TCNNGA 6 cut(s) 87, 320, 754, 764, 940, 1037
Hpy8I GTNNAC 2 cut(s) 155, 965
HpyAV CCTTC 4 cut(s) 494, 683, 808, 1144
HpyCH4III ACNGT 2 cut(s) 133, 1114
HpyCH4V TGCA 6 cut(s) 20, 155, 404, 478, 727, 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 547, 724, 1094
HpyF3I CTNAG 6 cut(s) 222, 256, 542, 878, 1092, 1103
Hsp92II CATG 7 cut(s) 399, 457, 482, 536, 727, 779, 1025
HspAI GCGC 1 cut(s) 916
Ksp22I TGATCA 2 cut(s) 600, 981
Kzo9I GATC 5 cut(s) 143, 229, 600, 981, 1132
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 7 cut(s) 87, 333, 536, 733, 747, 829, 1149
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 6 cut(s) 7, 53, 250, 334, 736, 927
MaeI CTAG 3 cut(s) 176, 821, 1037
MaeIII GTNAC 3 cut(s) 512, 523, 1153
MalI GATC 5 cut(s) 145, 231, 602, 983, 1134
MboI GATC 5 cut(s) 143, 229, 600, 981, 1132
MboII GAAGA 7 cut(s) 335, 398, 617, 693, 752, 970, 1052
MhlI GDGCHC 2 cut(s) 65, 157
MluCI AATT 8 cut(s) 26, 378, 788, 809, 865, 924, 1210, 1219
MlyI GAGTC 3 cut(s) 439, 707, 970
MmeI TCCRAC 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 729
MslI CAYNNNNRTG 2 cut(s) 131, 953
MwoI GCNNNNNNNGC 3 cut(s) 547, 724, 1094
NdeI CATATG 1 cut(s) 611
NdeII GATC 5 cut(s) 143, 229, 600, 981, 1132
NlaIII CATG 7 cut(s) 399, 457, 482, 536, 727, 779, 1025
NmuCI GTSAC 3 cut(s) 512, 523, 1153
NsiI ATGCAT 1 cut(s) 729
NspI RCATGY 3 cut(s) 457, 727, 779
NspV TTCGAA 1 cut(s) 710
PaeI GCATGC 2 cut(s) 727, 779
PciI ACATGT 1 cut(s) 453
PfeI GAWTC 6 cut(s) 218, 483, 575, 757, 903, 999
PflMI CCANNNNNTGG 1 cut(s) 636
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 3 cut(s) 438, 706, 969
PpsI GAGTC 3 cut(s) 438, 706, 969
PscI ACATGT 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 65
PspEI GGTNACC 2 cut(s) 512, 1153
PspFI CCCAGC 1 cut(s) 719
PspPI GGNCC 3 cut(s) 304, 363, 717
RsaI GTAC 5 cut(s) 747, 819, 876, 1101, 1116
RsaNI GTAC 5 cut(s) 746, 818, 875, 1100, 1115
RseI CAYNNNNRTG 2 cut(s) 131, 953
SacI GAGCTC 1 cut(s) 65
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 5 cut(s) 143, 229, 600, 981, 1132
Sau96I GGNCC 3 cut(s) 304, 363, 717
ScaI AGTACT 3 cut(s) 876, 1101, 1116
SchI GAGTC 3 cut(s) 439, 707, 970
SduI GDGCHC 2 cut(s) 65, 157
SfaNI GCATC 6 cut(s) 7, 53, 250, 334, 736, 927
SfcI CTRYAG 2 cut(s) 162, 780
SfuI TTCGAA 1 cut(s) 710
SinI GGWCC 2 cut(s) 304, 363
SmiMI CAYNNNNRTG 2 cut(s) 131, 953
SpeI ACTAGT 1 cut(s) 820
SphI GCATGC 2 cut(s) 727, 779
Sse9I AATT 8 cut(s) 26, 378, 788, 809, 865, 924, 1210, 1219
SsiI CCGC 1 cut(s) 1122
SspMI CTAG 3 cut(s) 176, 821, 1037
SstI GAGCTC 1 cut(s) 65
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 133, 1114
TaqI TCGA 3 cut(s) 710, 1053, 1171
TasI AATT 8 cut(s) 26, 378, 788, 809, 865, 924, 1210, 1219
TatI WGTACW 3 cut(s) 874, 1099, 1114
TfiI GAWTC 6 cut(s) 218, 483, 575, 757, 903, 999
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 3 cut(s) 512, 523, 1153
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 3 cut(s) 512, 523, 1153
TspDTI ATGAA 9 cut(s) 38, 195, 303, 384, 390, 399, 429, 677, 918
TspGWI ACGGA 2 cut(s) 982, 1011
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 636
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 304, 363
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 2 cut(s) 788, 1210
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 3 cut(s) 457, 727, 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 964
XspI CTAG 3 cut(s) 176, 821, 1037
ZrmI AGTACT 3 cut(s) 876, 1101, 1116
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.