Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016077

Physical Location & Seq

Genomic Coordinates Reverse (-)

5376961 .. 5378533

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGAATCCTCCAAAACAAAACAATGAAAGAACAAGACAACCAACTCAAAATCCCTGAACCATTACGAGCTGACTGGTTCATGGTTCTAGTCACCATCCAAGCTGATCTAATCTACAACGCACTCGTGGTATTATCCTCACCTTTCTTTCTCCTATACCGCTCTTACCGCCGCGCAGTCGTTACCGTCTCCGCAGCAGAAAAAGCGGTTAAACGTGCTCCAGCGCAGATAGCTGGTGGTGCGGGGCGGGTTGTTAGGAGGACATGGTTTGGTATATTGGGTGCATGCCACGTGTCAATGGTAATGGTGTTGGCTTTGATTTTGGCGGTTGTTATTGGTGTTGGGATTGTGAGTTTGTATGTAGAAAAGCCTGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCCAGTGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAGTGTTCATGTCTCTTTAGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGAGTATTTCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGCGAGACAATCGCGAGATCGAGCCAACCTTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGTTCCACTTATAGCCGGGATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCACCAAGAGAAAATGCCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAACTCGGACATTGCCTCAGTTATATGAAGCAGAGATCGTTATAAACTCAAAACCGCCCTGGATTAAACGAATGGCTTATAACTGGAAATGGACTCTTTGCGTATGGACTTCAATGTACCTTTACGTCGCGATTTTGACCGCACTTCTTTGGTGTTTTAGACCGGTTTTGTTCCCTTACACTTCCTCAAGAACCATTTCGGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAGAACAAGTCATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCGAAGAAATTTTGCTACTACACAGAAAAGTTATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010344 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

368

Amino Acids

42.48

Weight (kDa)

10.22

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seipin	PF06775	104 - 300	9.7e-52	Putative adipose-regulatory protein (Seipin)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16460
fragaria_vesca	FvH4_6g00490
malus_domestica	MD04G1244900.v1.1
prunus_persica	Prupe.6G361500_v2.0.a1
pyrus_communis	pycom04g21570
rosa_chinensis	RchiOBHm_Chr3g0447871
rosa_laevigata	RLG00000025965
rosa_multiflora	Rmu_sc0020869.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426070
rosa_rugosa	Rorug02G0606700
rosa_samantha	Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana	Rw3G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	821, 858
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	4 cut(s)	174, 587, 772, 908
AcsI	RAATTY	1 cut(s)	1075
AcuI	CTGAAG	1 cut(s)	429
AcvI	CACGTG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	291
AgeI	ACCGGT	1 cut(s)	940
AgsI	TTSAA	4 cut(s)	550, 571, 891, 1010
AjnI	CCWGG	1 cut(s)	836
AluBI	AGCT	4 cut(s)	71, 104, 233, 559
AluI	AGCT	4 cut(s)	71, 104, 233, 559
Alw21I	GWGCWC	2 cut(s)	220, 778
Alw26I	GTCTC	4 cut(s)	193, 378, 493, 572
Alw44I	GTGCAC	1 cut(s)	774
ApaLI	GTGCAC	1 cut(s)	774
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	1075
AseI	ATTAAT	1 cut(s)	522
AsiGI	ACCGGT	1 cut(s)	940
Asp700I	GAANNNNTTC	1 cut(s)	973
AspLEI	GCGC	2 cut(s)	176, 226
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	2 cut(s)	85, 132
BaeGI	GKGCMC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	220, 778
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	734
BciT130I	CCWGG	1 cut(s)	838
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	4 cut(s)	193, 378, 493, 572
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	172, 195
BlsI	GCNGC	2 cut(s)	173, 196
Bme1390I	CCNGG	2 cut(s)	676, 838
BmrFI	CCNGG	2 cut(s)	676, 838
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	495, 700
BmuI	ACTGGG	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	745, 777
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	949
BpuMI	CCSGG	1 cut(s)	676
Bsa29I	ATCGAT	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	737, 836
BsaWI	WCCGGW	1 cut(s)	940
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	940
Bse1I	ACTGG	3 cut(s)	80, 420, 866
Bse3DI	GCAATG	1 cut(s)	788
BseBI	CCWGG	1 cut(s)	838
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	737, 836
BseGI	GGATG	2 cut(s)	96, 510
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	1 cut(s)	809
BseNI	ACTGG	3 cut(s)	80, 420, 866
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	1 cut(s)	206
Bsh1236I	CGCG	4 cut(s)	174, 587, 772, 908
BshTI	ACCGGT	1 cut(s)	940
BshVI	ATCGAT	1 cut(s)	708
BsiHKAI	GWGCWC	2 cut(s)	220, 778
BsiSI	CCGG	2 cut(s)	675, 941
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	4 cut(s)	193, 378, 493, 572
BsmBI	CGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	220, 778
Bsp143I	GATC	5 cut(s)	106, 452, 590, 813, 996
Bsp68I	TCGCGA	2 cut(s)	587, 908
BspCNI	CTCAG	1 cut(s)	808
BspDI	ATCGAT	1 cut(s)	708
BspFNI	CGCG	4 cut(s)	174, 587, 772, 908
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	940
BsrI	ACTGG	3 cut(s)	80, 420, 866
BssAI	RCCGGY	1 cut(s)	940
BssECI	CCNNGG	2 cut(s)	737, 836
BssMI	GATC	5 cut(s)	106, 452, 590, 813, 996
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	2 cut(s)	187, 615
Bst6I	CTCTTC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	286, 774
BstDEI	CTNAG	2 cut(s)	795, 991
BstF5I	GGATG	2 cut(s)	96, 510
BstFNI	CGCG	4 cut(s)	174, 587, 772, 908
BstHHI	GCGC	2 cut(s)	176, 226
BstKTI	GATC	5 cut(s)	109, 455, 593, 816, 999
BstMAI	GTCTC	4 cut(s)	193, 378, 493, 572
BstMBI	GATC	5 cut(s)	106, 452, 590, 813, 996
BstMWI	GCNNNNNNNGC	8 cut(s)	168, 203, 230, 239, 505, 680, 689, 755
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	674, 836
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	4 cut(s)	174, 587, 772, 908
BstV1I	GCAGC	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	708
BsuTUI	ATCGAT	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	96, 510
BtsIMutI	CAGTG	2 cut(s)	405, 427
BtuMI	TCGCGA	2 cut(s)	587, 908
Cac8I	GCNNGC	2 cut(s)	286, 774
CfoI	GCGC	2 cut(s)	176, 226
Cfr10I	RCCGGY	1 cut(s)	940
ClaI	ATCGAT	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	895
CspAI	ACCGGT	1 cut(s)	940
CviAII	CATG	5 cut(s)	82, 264, 285, 485, 1030
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	2 cut(s)	795, 991
DpnI	GATC	5 cut(s)	108, 454, 592, 815, 998
DpnII	GATC	5 cut(s)	106, 452, 590, 813, 996
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	429
Eco72I	CACGTG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	737
EcoT22I	ATGCAT	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	737
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	5 cut(s)	85, 267, 288, 488, 1033
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FatI	CATG	5 cut(s)	81, 263, 284, 484, 1029
FauI	CCCGC	2 cut(s)	235, 240
Fnu4HI	GCNGC	2 cut(s)	172, 195
FokI	GGATG	2 cut(s)	83, 517
Fsp4HI	GCNGC	2 cut(s)	172, 195
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	175, 225
GluI	GCNGC	2 cut(s)	172, 195
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	2 cut(s)	675, 941
HhaI	GCGC	2 cut(s)	176, 226
Hin1II	CATG	5 cut(s)	85, 267, 288, 488, 1033
Hin6I	GCGC	2 cut(s)	174, 224
HinP1I	GCGC	2 cut(s)	174, 224
HinfI	GANTC	6 cut(s)	6, 512, 705, 760, 766, 871
HpaII	CCGG	2 cut(s)	675, 941
HphI	GGTGA	2 cut(s)	85, 132
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188I	TCNGA	5 cut(s)	517, 620, 765, 786, 979
Hpy188III	TCNNGA	3 cut(s)	586, 907, 966
Hpy8I	GTNNAC	1 cut(s)	776
Hpy99I	CGWCG	3 cut(s)	908, 1044, 1071
HpyCH4III	ACNGT	2 cut(s)	187, 615
HpyCH4IV	ACGT	3 cut(s)	214, 291, 903
HpyCH4V	TGCA	4 cut(s)	284, 641, 713, 776
HpyF10VI	GCNNNNNNNGC	8 cut(s)	168, 203, 230, 239, 505, 680, 689, 755
HpyF3I	CTNAG	2 cut(s)	795, 991
HpySE526I	ACGT	3 cut(s)	214, 291, 903
Hsp92II	CATG	5 cut(s)	85, 267, 288, 488, 1033
HspAI	GCGC	2 cut(s)	174, 224
Kzo9I	GATC	5 cut(s)	106, 452, 590, 813, 996
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	2 cut(s)	495, 700
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	3 cut(s)	214, 291, 903
MaeIII	GTNAC	3 cut(s)	91, 181, 609
MalI	GATC	5 cut(s)	108, 454, 592, 815, 998
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	5 cut(s)	106, 452, 590, 813, 996
MboII	GAAGA	8 cut(s)	422, 457, 460, 540, 1022, 1025, 1065, 1083
MhlI	GDGCHC	2 cut(s)	220, 778
MluCI	AATT	3 cut(s)	519, 531, 1075
MlyI	GAGTC	2 cut(s)	754, 865
MnlI	CCTC	7 cut(s)	20, 148, 252, 804, 973, 1038, 1074
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	973
MseI	TTAA	4 cut(s)	210, 522, 716, 843
MspI	CCGG	2 cut(s)	675, 941
MspR9I	CCNGG	2 cut(s)	676, 838
MvaI	CCWGG	1 cut(s)	838
MvnI	CGCG	4 cut(s)	174, 587, 772, 908
MwoI	GCNNNNNNNGC	8 cut(s)	168, 203, 230, 239, 505, 680, 689, 755
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	5 cut(s)	106, 452, 590, 813, 996
NlaIII	CATG	5 cut(s)	85, 267, 288, 488, 1033
NmuCI	GTSAC	1 cut(s)	91
NruI	TCGCGA	2 cut(s)	587, 908
NsiI	ATGCAT	1 cut(s)	715
NspI	RCATGY	1 cut(s)	288
PaeI	GCATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	973
PfeI	GAWTC	4 cut(s)	6, 512, 705, 766
PinAI	ACCGGT	1 cut(s)	940
PkrI	GCNGC	2 cut(s)	173, 196
PleI	GAGTC	2 cut(s)	754, 865
PmaCI	CACGTG	1 cut(s)	292
PmlI	CACGTG	1 cut(s)	292
PpsI	GAGTC	2 cut(s)	754, 865
Ppu21I	YACGTR	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	522
PsiI	TTATAA	2 cut(s)	821, 858
Psp6I	CCWGG	1 cut(s)	836
PspCI	CACGTG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	836
RruI	TCGCGA	2 cut(s)	587, 908
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
SaqAI	TTAA	4 cut(s)	210, 522, 716, 843
SatI	GCNGC	2 cut(s)	172, 195
Sau3AI	GATC	5 cut(s)	106, 452, 590, 813, 996
SchI	GAGTC	2 cut(s)	754, 865
ScrFI	CCNGG	2 cut(s)	676, 838
SduI	GDGCHC	2 cut(s)	220, 778
SfaNI	GCATC	2 cut(s)	495, 700
SmlI	CTYRAG	1 cut(s)	964
SmoI	CTYRAG	1 cut(s)	964
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	3 cut(s)	519, 531, 1075
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	674, 836
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	2 cut(s)	187, 615
TaiI	ACGT	3 cut(s)	217, 294, 906
TaqI	TCGA	5 cut(s)	526, 593, 708, 999, 1069
TasI	AATT	3 cut(s)	519, 531, 1075
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	4 cut(s)	6, 512, 705, 766
Tru1I	TTAA	4 cut(s)	210, 522, 716, 843
Tru9I	TTAA	4 cut(s)	210, 522, 716, 843
TscAI	CASTG	2 cut(s)	412, 427
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	41, 70, 473, 819
TspGWI	ACGGA	1 cut(s)	1057
TspRI	CASTG	2 cut(s)	412, 427
VneI	GTGCAC	1 cut(s)	774
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	1075
XceI	RCATGY	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	973
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.