Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016077

Physical Location & Seq

Genomic Coordinates Reverse (-)

415741 .. 419712

Gene Structure 3972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGAACCAGCTCCATTACTGGAAACACCAACTTTAGACCCTTATGATGATGAAGACGATGAAGACAAGTATCTGATACCAAAGCCATCAGAGTGGTTCCCAAAGCTAGTGTCTTTACAAGCTGATTTGATTTACAACTCCATCCTGGTTTTATGTCACCCCATGCTCTCCATCTTCTCTTTCGCCTACGAGTCTTACCACCAAGCCGAGCAGGCCAAGGAGACGGTCGAGTCCGCAGTCCAAAAAGCCCCCTCCACCATCATACACGGCGCAGTCGTCCTCATCAAGAAGCTCGGCTTTGGAGTTCTCGGGGCAGCCTATGTCTGCATGGTGTTGTTTATGCTTTTGATTCTGGCCACAATTGTGGGAGTTGCTTTGGTGCGGCTCTGGCTGGAAGAGCCTGTGGTTGTTACGGAGAGGTTGCACTTTGATTACACCCTAGCTCATCCCAAAGCGGTGTTTGTGTTCGGAGGATCAGGGTTAGCTGCTGGGAGTGGTGCTGACTACTGCAAGATTATTAGCAGCAACAGTAAGCGTATGGCTATGGGGGTTCCTGTTGGACACACTTTTACTGTGTCTCTGGAGCTTTTGATGCCGGAGTCTGATTTTAATAGGCACATTGGGGTGTTTCAGATGACCGCAGAAGCCTTATCAGCTAATGGTGATGTGATTGCCAAGTCAAGCCAGCCATGTATGCTACGATTTAGAAGCCTCCCAATTCGACTCACAAGAACATTTCTTATGGGTGTACCTCTGATACTGGGCATTTCTGGAGAAACCCAGAAGATAGCAGTACAAATACTGAGGCACAAGGAAGGGACTTATCCAAGAACCCGAGCAATAAGAATAACAATAAGTCCAAGAGCTGGTACTTCACATCTTCCACAGTTGTATGAGGCTGAAATTGTTTTGAATTCACAGCTGCCTTGGACAAAGCAATTGGTGCGCAGTTGGAAATGGACGCTCTATGTCTGGGCCTCTTTGTATTGTTACACTATATTCGTAATAACTTATGTAACGTGTTGTAGACCACTCTTGTCACCAGTGACAATGATCAAAACTGCGGCGAATTATGTTGCTAATCGTGTTAATCATGACCGATCAACTACTGATCATGTTCAAAGAGATAGAGGGGCGAGTACTGAAGTAAGACGGCGAAGACCCCTTCGAGTGCCTAAAGAGGCCACAACAACACTTAAAGATAATTCTGATCAGAGTGAGGATATTTCAGAGTTGTTGAGAAAGTGGCAGCGGAGCAGAAGCAAAAGAAAGGCAATCTATTTTCCAACGGATTTACCAAGTGAGACTGTTGGCACCTCATCTGCACCATCAACGATTAGTATGAGTACTCGAGAAGATGCAAGTACTGGAACTGCGGAAGAAGATGTTGGGGACTCGGAATCAGTGTGTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010344 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

471

Amino Acids

52.48

Weight (kDa)

7.61

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seipin	PF06775	113 - 329	1.2e-49	Putative adipose-regulatory protein (Seipin)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16460
fragaria_vesca	FvH4_6g00490
malus_domestica	MD04G1244900.v1.1
prunus_persica	Prupe.6G361500_v2.0.a1
pyrus_communis	pycom04g21570
rosa_chinensis	RchiOBHm_Chr3g0447871
rosa_laevigata	RLG00000025965
rosa_multiflora	Rmu_sc0020869.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426070
rosa_rugosa	Rorug02G0606700
rosa_samantha	Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana	Rw3G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
Acc16I	TGCGCA	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	1313
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccI	GTMKAC	1 cut(s)	1027
AciI	CCGC	7 cut(s)	234, 382, 455, 639, 1064, 1252, 1376
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	913
AcuI	CTGAAG	1 cut(s)	1164
AfaI	GTAC	7 cut(s)	750, 795, 871, 1141, 1348, 1366, 1411
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflIII	ACRYGT	1 cut(s)	1019
AgsI	TTSAA	2 cut(s)	913, 1121
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	1371, 1403
AleI	CACNNNNGTG	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	215, 582, 1298
AlwI	GGATC	1 cut(s)	481
Ama87I	CYCGRG	3 cut(s)	308, 834, 1350
AoxI	GGCC	4 cut(s)	213, 354, 975, 1182
ApeKI	GCWGC	5 cut(s)	314, 485, 522, 922, 1249
ApoI	RAATTY	1 cut(s)	913
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	2 cut(s)	272, 948
AspS9I	GGNCC	1 cut(s)	975
AsuHPI	GGTGA	3 cut(s)	149, 674, 1032
AvaI	CYCGRG	3 cut(s)	308, 834, 1350
BalI	TGGCCA	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	1313
BbsI	GAAGAC	3 cut(s)	60, 69, 1165
BbvI	GCAGC	5 cut(s)	326, 472, 534, 909, 1261
BccI	CCATC	5 cut(s)	94, 149, 179, 266, 1336
BceAI	ACGGC	2 cut(s)	283, 1169
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	3 cut(s)	1053, 1111, 1210
BcoDI	GTCTC	3 cut(s)	215, 582, 1298
BfaI	CTAG	3 cut(s)	107, 440, 1414
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	7 cut(s)	315, 383, 486, 523, 923, 1065, 1250
BlsI	GCNGC	7 cut(s)	316, 384, 487, 524, 924, 1066, 1251
BmcAI	AGTACT	3 cut(s)	1141, 1348, 1366
Bme1390I	CCNGG	1 cut(s)	146
BmeT110I	CYCGRG	3 cut(s)	308, 834, 1350
BmgT120I	GGNCC	1 cut(s)	975
BmiI	GGNNCC	4 cut(s)	6, 98, 552, 1315
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	2 cut(s)	582, 1348
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	3 cut(s)	60, 69, 1165
BpmI	CTGGAG	2 cut(s)	602, 792
BsaJI	CCNNGG	2 cut(s)	216, 926
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	4 cut(s)	24, 765, 1043, 1372
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	216, 926
BseGI	GGATG	2 cut(s)	141, 445
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	4 cut(s)	24, 765, 1043, 1372
BseXI	GCAGC	5 cut(s)	326, 472, 534, 909, 1261
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	1308
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	215, 356, 977, 1184
BshNI	GGYRCC	1 cut(s)	1313
BsiEI	CGRYCG	1 cut(s)	228
BsiHKCI	CYCGRG	3 cut(s)	308, 834, 1350
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	2 cut(s)	832, 1406
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	3 cut(s)	215, 582, 1298
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	832, 1406
BsnI	GGCC	4 cut(s)	215, 356, 977, 1184
BsoBI	CYCGRG	3 cut(s)	308, 834, 1350
Bsp143I	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
BspACI	CCGC	7 cut(s)	234, 382, 455, 639, 1064, 1252, 1376
BspANI	GGCC	4 cut(s)	215, 356, 977, 1184
BspCNI	CTCAG	1 cut(s)	795
BspHI	TCATGA	1 cut(s)	1093
BspLI	GGNNCC	4 cut(s)	6, 98, 552, 1315
BspPI	GGATC	1 cut(s)	481
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	1313
BsrI	ACTGG	4 cut(s)	24, 765, 1043, 1372
BssECI	CCNNGG	2 cut(s)	216, 926
BssMI	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
BssT1I	CCWWGG	2 cut(s)	216, 926
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	5 cut(s)	226, 530, 574, 888, 1309
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	943
BstC8I	GCNNGC	2 cut(s)	213, 686
BstDEI	CTNAG	1 cut(s)	803
BstF5I	GGATG	2 cut(s)	141, 445
BstHHI	GCGC	2 cut(s)	272, 948
BstKTI	GATC	5 cut(s)	476, 1056, 1103, 1114, 1213
BstMAI	GTCTC	3 cut(s)	215, 582, 1298
BstMBI	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	7 cut(s)	212, 388, 397, 592, 653, 694, 943
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	5 cut(s)	326, 472, 534, 909, 1261
BstV2I	GAAGAC	3 cut(s)	60, 69, 1165
BstXI	CCANNNNNNTGG	2 cut(s)	93, 364
BsuRI	GGCC	4 cut(s)	215, 356, 977, 1184
BtsCI	GGATG	2 cut(s)	141, 445
BtsIMutI	CAGTG	2 cut(s)	1050, 1410
Cac8I	GCNNGC	2 cut(s)	213, 686
CciI	TCATGA	1 cut(s)	1093
CfoI	GCGC	2 cut(s)	272, 948
Cfr13I	GGNCC	1 cut(s)	975
CseI	GACGC	1 cut(s)	970
Csp6I	GTAC	7 cut(s)	749, 794, 870, 1140, 1347, 1365, 1410
CviAII	CATG	5 cut(s)	163, 328, 690, 1094, 1115
CviQI	GTAC	7 cut(s)	749, 794, 870, 1140, 1347, 1365, 1410
DdeI	CTNAG	1 cut(s)	803
DpnI	GATC	5 cut(s)	475, 1055, 1102, 1113, 1212
DpnII	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	216, 926
Eco57I	CTGAAG	1 cut(s)	1164
Eco88I	CYCGRG	3 cut(s)	308, 834, 1350
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	216, 926
ErhI	CCWWGG	2 cut(s)	216, 926
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	5 cut(s)	166, 331, 693, 1097, 1118
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	2 cut(s)	832, 1406
FatI	CATG	5 cut(s)	162, 327, 689, 1093, 1114
FbaI	TGATCA	3 cut(s)	1053, 1111, 1210
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	7 cut(s)	315, 383, 486, 523, 923, 1065, 1250
FokI	GGATG	2 cut(s)	128, 432
Fsp4HI	GCNGC	7 cut(s)	315, 383, 486, 523, 923, 1065, 1250
FspBI	CTAG	3 cut(s)	107, 440, 1414
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	2 cut(s)	271, 947
GluI	GCNGC	7 cut(s)	315, 383, 486, 523, 923, 1065, 1250
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	2 cut(s)	602, 792
HaeIII	GGCC	4 cut(s)	215, 356, 977, 1184
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	970
HhaI	GCGC	2 cut(s)	272, 948
Hin1II	CATG	5 cut(s)	166, 331, 693, 1097, 1118
Hin6I	GCGC	2 cut(s)	270, 946
HinP1I	GCGC	2 cut(s)	270, 946
HinfI	GANTC	7 cut(s)	191, 230, 349, 599, 723, 1394, 1400
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	3 cut(s)	149, 674, 1032
Hpy166II	GTNNAC	3 cut(s)	749, 1028, 1410
Hpy188III	TCNNGA	5 cut(s)	286, 581, 771, 1094, 1352
Hpy8I	GTNNAC	3 cut(s)	749, 1028, 1410
HpyAV	CCTTC	2 cut(s)	809, 1175
HpyCH4III	ACNGT	5 cut(s)	226, 530, 574, 888, 1309
HpyCH4IV	ACGT	1 cut(s)	1019
HpyCH4V	TGCA	5 cut(s)	327, 424, 510, 1325, 1361
HpyF10VI	GCNNNNNNNGC	7 cut(s)	212, 388, 397, 592, 653, 694, 943
HpyF3I	CTNAG	1 cut(s)	803
HpySE526I	ACGT	1 cut(s)	1019
Hsp92II	CATG	5 cut(s)	166, 331, 693, 1097, 1118
HspAI	GCGC	2 cut(s)	270, 946
Ksp22I	TGATCA	3 cut(s)	1053, 1111, 1210
Kzo9I	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	3 cut(s)	16, 583, 1254
Lsp1109I	GCAGC	5 cut(s)	326, 472, 534, 909, 1261
LweI	GCATC	2 cut(s)	582, 1348
MaeI	CTAG	3 cut(s)	107, 440, 1414
MaeII	ACGT	1 cut(s)	1019
MaeIII	GTNAC	6 cut(s)	155, 409, 989, 1015, 1038, 1045
MalI	GATC	5 cut(s)	475, 1055, 1102, 1113, 1212
MboI	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
MfeI	CAATTG	2 cut(s)	360, 938
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	7 cut(s)	360, 717, 903, 913, 938, 1069, 1204
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	5 cut(s)	200, 239, 608, 717, 1388
MmeI	TCCRAC	3 cut(s)	538, 932, 1310
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	3 cut(s)	609, 1089, 1197
MslI	CAYNNNNRTG	3 cut(s)	91, 362, 623
Msp20I	TGGCCA	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	922, 1252
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	2 cut(s)	360, 938
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	7 cut(s)	212, 388, 397, 592, 653, 694, 943
NdeII	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
NlaIII	CATG	5 cut(s)	166, 331, 693, 1097, 1118
NlaIV	GGNNCC	4 cut(s)	6, 98, 552, 1315
NmeAIII	GCCGAG	2 cut(s)	232, 273
NmuCI	GTSAC	3 cut(s)	155, 1038, 1045
NsbI	TGCGCA	1 cut(s)	947
OliI	CACNNNNGTG	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	1350
PagI	TCATGA	1 cut(s)	1093
PciSI	GCTCTTC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	349, 1400
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	7 cut(s)	316, 384, 487, 524, 924, 1066, 1251
PleI	GAGTC	5 cut(s)	199, 238, 607, 717, 1388
PpsI	GAGTC	5 cut(s)	199, 238, 607, 717, 1388
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	4 cut(s)	6, 98, 552, 1315
PspPI	GGNCC	1 cut(s)	975
PvuII	CAGCTG	1 cut(s)	922
RsaI	GTAC	7 cut(s)	750, 795, 871, 1141, 1348, 1366, 1411
RsaNI	GTAC	7 cut(s)	749, 794, 870, 1140, 1347, 1365, 1410
RseI	CAYNNNNRTG	3 cut(s)	91, 362, 623
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	609, 1089, 1197
SatI	GCNGC	7 cut(s)	315, 383, 486, 523, 923, 1065, 1250
Sau3AI	GATC	5 cut(s)	473, 1053, 1100, 1111, 1210
Sau96I	GGNCC	1 cut(s)	975
ScaI	AGTACT	3 cut(s)	1141, 1348, 1366
SchI	GAGTC	5 cut(s)	200, 239, 608, 717, 1388
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	2 cut(s)	582, 1348
Sfr274I	CTCGAG	1 cut(s)	1350
SlaI	CTCGAG	1 cut(s)	1350
SmiMI	CAYNNNNRTG	3 cut(s)	91, 362, 623
SmlI	CTYRAG	1 cut(s)	1350
SmoI	CTYRAG	1 cut(s)	1350
Sse9I	AATT	7 cut(s)	360, 717, 903, 913, 938, 1069, 1204
SsiI	CCGC	7 cut(s)	234, 382, 455, 639, 1064, 1252, 1376
SspMI	CTAG	3 cut(s)	107, 440, 1414
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	216, 926
TaaI	ACNGT	5 cut(s)	226, 530, 574, 888, 1309
TaiI	ACGT	1 cut(s)	1022
TaqI	TCGA	4 cut(s)	228, 721, 1168, 1351
TaqII	GACCGA	1 cut(s)	1113
TasI	AATT	7 cut(s)	360, 717, 903, 913, 938, 1069, 1204
TatI	WGTACW	4 cut(s)	793, 1139, 1346, 1364
TauI	GCSGC	2 cut(s)	385, 1067
TfiI	GAWTC	2 cut(s)	349, 1400
Tru1I	TTAA	3 cut(s)	609, 1089, 1197
Tru9I	TTAA	3 cut(s)	609, 1089, 1197
TscAI	CASTG	2 cut(s)	1050, 1410
TseFI	GTSAC	3 cut(s)	155, 1038, 1045
TseI	GCWGC	5 cut(s)	314, 485, 522, 922, 1249
Tsp45I	GTSAC	3 cut(s)	155, 1038, 1045
TspDTI	ATGAA	2 cut(s)	66, 75
TspGWI	ACGGA	2 cut(s)	428, 1304
TspRI	CASTG	2 cut(s)	1050, 1410
Van91I	CCANNNNNTGG	1 cut(s)	866
XapI	RAATTY	1 cut(s)	913
XhoI	CTCGAG	1 cut(s)	1350
XmiI	GTMKAC	1 cut(s)	1027
XspI	CTAG	3 cut(s)	107, 440, 1414
ZrmI	AGTACT	3 cut(s)	1141, 1348, 1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.