Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016077

Physical Location & Seq

Genomic Coordinates Reverse (-)

72430365 .. 72431666

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0606700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTTTTCTGAATTAATCATAAGAAATTCTGCTACTTTAGCACCACTTATGGTGGAGGAGAAAGACAAGAAAGGAACCATGAAAGAAGAAAGATTGAAGAGCAAGAGTCTCTACTTATGTTTTGAGGAGCAGATAACTCGTTTTAATGTTGCTCACGTTATTCAATCTATCGAATTGAGCCACGTGTTGGCAGCACCAACTGATGGTGATCATGGCTGCGATGAACTTAAGTTAGGTGAAGTTGCTTATAGATTTGGACCGGACTCTTATGTTCCTTGCAGGATGAGCAATAGTGTCATCGGCTCCAAAATAATTTTCTCCGGTGGTATGGTATTTAACAGAAAGGAAAGCACTACTACTCCTCCTCCCAAGACGATTTTAAGTAAAGAAGTTTGTGTGTTTGAGACAGCTCCAAGCATAGATCCGAATCCGACATTGCAGCCCTCCCAAGTGTTTAAGACTAGTAGACCCGATCCCTTCCTAGCAGAAGTGGTTGGCGAACTATATTGTTTCGGTGGCCCATGCTACTCTGAGTCCTTCGAGGTATTTGACAAGACACTTGAGAAATGGTTGCCTCTGGATGTGCCTCCTCAGAGATATCCCTACGGTGTCTGTCATGCAATTTTGGGAAACAAAATGTTACTCTGGGTAAAAAATCAGACCGGAGTAGTCGGGTTTGACGTCGCTCAACCGGAAAAAGGATGGACAGAGTTGGACTCTTGTTTGGGAAGCTGCATTCCCTATGTTAATAGTTATGATCAACTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTGAAACAACCTCAGACTGTTAGAGTCTTTCACATTTCGCATGAATGTGATTCTATGAAACCTATGGAATCTCTGCAGCTGCCAAAATTGCCTCATAAATTTCCTGTACCACAACGATGTCAGTTTTTTCATCTAGAAGATAATAAAGTTGGCATTGTTTTCTTCCGTGACCGTCGTGAGTATTTTTATGAGGATTATGATTATTTTTCTCATGGTGATGATGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGATGAGGAGGAGGAGGAGGAGGAGGAGGATGTTAGCAGGGTGAGAACTCTTGTCATAATATTTGAATACGAAATTGCGGAGAAATCCATGGACATCAAGTACAAATTGCTCACCACTCGCTGCCTGAAATACTCTACCCACCCTCCTGAAGAAGGTAGGACCACCAGTTCAACCCTTATTGGTTCTTATGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010344 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

433

Amino Acids

49.76

Weight (kDa)

4.66

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16460
fragaria_vesca	FvH4_6g00490
malus_domestica	MD04G1244900.v1.1
prunus_persica	Prupe.6G361500_v2.0.a1
pyrus_communis	pycom04g21570
rosa_chinensis	RchiOBHm_Chr3g0447871
rosa_laevigata	RLG00000025965
rosa_multiflora	Rmu_sc0020869.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426070
rosa_rugosa	Rorug02G0606700
rosa_samantha	Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana	Rw3G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	684
AccB7I	CCANNNNNTGG	2 cut(s)	187, 203
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	1 cut(s)	1181
AclWI	GGATC	2 cut(s)	416, 467
AcsI	RAATTY	2 cut(s)	25, 917
AcuI	CTGAAG	1 cut(s)	1272
AcvI	CACGTG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	681
AfaI	GTAC	2 cut(s)	927, 1205
AfiI	CCNNNNNNNGG	4 cut(s)	187, 203, 698, 1256
AflII	CTTAAG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	6 cut(s)	97, 164, 778, 823, 1169, 1275
AhlI	ACTAGT	1 cut(s)	461
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AloI	GAACNNNNNNTCC	2 cut(s)	1255, 1287
AluBI	AGCT	3 cut(s)	410, 732, 898
AluI	AGCT	3 cut(s)	410, 732, 898
Alw26I	GTCTC	3 cut(s)	113, 398, 786
AlwI	GGATC	2 cut(s)	416, 467
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	7 cut(s)	191, 216, 439, 732, 895, 898, 1224
ApoI	RAATTY	2 cut(s)	25, 917
AseI	ATTAAT	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	257, 518, 1263
AsuHPI	GGTGA	6 cut(s)	218, 248, 803, 1046, 1156, 1207
AvaII	GGWCC	2 cut(s)	257, 1263
BbrPI	CACGTG	1 cut(s)	184
BbvI	GCAGC	7 cut(s)	203, 203, 451, 719, 885, 907, 1211
BccI	CCATC	3 cut(s)	197, 696, 788
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BclI	TGATCA	2 cut(s)	208, 757
BcoDI	GTCTC	3 cut(s)	113, 398, 786
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	4 cut(s)	462, 482, 953, 1300
BfmI	CTRYAG	1 cut(s)	893
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	7 cut(s)	192, 217, 440, 733, 896, 899, 1225
BlsI	GCNGC	7 cut(s)	193, 218, 441, 734, 897, 900, 1226
Bme18I	GGWCC	2 cut(s)	257, 1263
BmgT120I	GGNCC	3 cut(s)	257, 518, 1263
BmiI	GGNNCC	2 cut(s)	76, 304
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpuEI	CTTGAG	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	2 cut(s)	207, 426
BsaHI	GRCGYC	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	1191
BsaWI	WCCGGW	4 cut(s)	259, 320, 662, 691
BsaXI	ACNNNNNCTCC	8 cut(s)	343, 346, 349, 373, 376, 379, 1231, 1261
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 203, 698, 1256
Bse1I	ACTGG	1 cut(s)	1269
Bse3DI	GCAATG	1 cut(s)	434
Bse8I	GATNNNNATC	2 cut(s)	207, 426
BseDI	CCNNGG	1 cut(s)	1191
BseGI	GGATG	5 cut(s)	288, 586, 707, 1108, 1138
BseJI	GATNNNNATC	2 cut(s)	207, 426
BseLI	CCNNNNNNNGG	4 cut(s)	187, 203, 698, 1256
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	3 cut(s)	522, 605, 845
BseNI	ACTGG	1 cut(s)	1269
BseXI	GCAGC	7 cut(s)	203, 203, 451, 719, 885, 907, 1211
BshFI	GGCC	1 cut(s)	519
BsiSI	CCGG	4 cut(s)	260, 321, 663, 692
BslI	CCNNNNNNNGG	4 cut(s)	187, 203, 698, 1256
BsmAI	GTCTC	3 cut(s)	113, 398, 786
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	1 cut(s)	519
Bsp143I	GATC	5 cut(s)	208, 421, 472, 757, 1296
Bsp19I	CCATGG	1 cut(s)	1191
BspACI	CCGC	1 cut(s)	1181
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	3 cut(s)	523, 604, 844
BspLI	GGNNCC	2 cut(s)	76, 304
BspMAI	CTGCAG	1 cut(s)	897
BspPI	GGATC	2 cut(s)	416, 467
BspQI	GCTCTTC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	1269
BssECI	CCNNGG	1 cut(s)	1191
BssMI	GATC	5 cut(s)	208, 421, 472, 757, 1296
BssNI	GRCGYC	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	1191
Bst4CI	ACNGT	3 cut(s)	608, 838, 992
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	681
BstAFI	CTTAAG	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	531, 591, 831
BstDSI	CCRYGG	1 cut(s)	1191
BstENI	CCTNNNNNAGG	1 cut(s)	1254
BstF5I	GGATG	5 cut(s)	288, 586, 707, 1108, 1138
BstKTI	GATC	5 cut(s)	211, 424, 475, 760, 1299
BstMAI	GTCTC	3 cut(s)	113, 398, 786
BstMBI	GATC	5 cut(s)	208, 421, 472, 757, 1296
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 285, 907
BstSFI	CTRYAG	1 cut(s)	893
BstV1I	GCAGC	7 cut(s)	203, 203, 451, 719, 885, 907, 1211
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	1191
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	5 cut(s)	288, 586, 707, 1108, 1138
Cfr13I	GGNCC	3 cut(s)	257, 518, 1263
Csp6I	GTAC	2 cut(s)	926, 1204
CviAII	CATG	7 cut(s)	79, 212, 522, 617, 860, 1031, 1192
CviJI	RGCY	8 cut(s)	180, 216, 303, 410, 442, 519, 732, 898
CviKI_1	RGCY	8 cut(s)	180, 216, 303, 410, 442, 519, 732, 898
CviQI	GTAC	2 cut(s)	926, 1204
DdeI	CTNAG	3 cut(s)	531, 591, 831
DpnI	GATC	5 cut(s)	210, 423, 474, 759, 1298
DpnII	GATC	5 cut(s)	208, 421, 472, 757, 1296
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	1191
Eco32I	GATATC	1 cut(s)	599
Eco47I	GGWCC	2 cut(s)	257, 1263
Eco57I	CTGAAG	1 cut(s)	1272
Eco72I	CACGTG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	1254
EcoRV	GATATC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	1191
ErhI	CCWWGG	1 cut(s)	1191
FaeI	CATG	7 cut(s)	82, 215, 525, 620, 863, 1034, 1195
FatI	CATG	7 cut(s)	78, 211, 521, 616, 859, 1030, 1191
FbaI	TGATCA	2 cut(s)	208, 757
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	7 cut(s)	192, 217, 440, 733, 896, 899, 1225
FokI	GGATG	5 cut(s)	295, 593, 714, 1115, 1145
Fsp4HI	GCNGC	7 cut(s)	192, 217, 440, 733, 896, 899, 1225
FspBI	CTAG	4 cut(s)	462, 482, 953, 1300
GluI	GCNGC	7 cut(s)	192, 217, 440, 733, 896, 899, 1225
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	4 cut(s)	260, 321, 663, 692
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	7 cut(s)	82, 215, 525, 620, 863, 1034, 1195
HinfI	GANTC	8 cut(s)	106, 263, 427, 533, 716, 843, 869, 887
HpaII	CCGG	4 cut(s)	260, 321, 663, 692
HphI	GGTGA	6 cut(s)	218, 248, 803, 1046, 1156, 1207
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	7 cut(s)	10, 426, 432, 532, 594, 660, 834
Hpy188III	TCNNGA	4 cut(s)	578, 953, 995, 1250
Hpy8I	GTNNAC	1 cut(s)	467
Hpy99I	CGWCG	2 cut(s)	686, 996
HpyAV	CCTTC	3 cut(s)	487, 547, 1250
HpyCH4III	ACNGT	3 cut(s)	608, 838, 992
HpyCH4IV	ACGT	3 cut(s)	156, 183, 681
HpyCH4V	TGCA	5 cut(s)	279, 439, 620, 735, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 285, 907
HpyF3I	CTNAG	3 cut(s)	531, 591, 831
HpySE526I	ACGT	3 cut(s)	156, 183, 681
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	7 cut(s)	82, 215, 525, 620, 863, 1034, 1195
Ksp22I	TGATCA	2 cut(s)	208, 757
Kzo9I	GATC	5 cut(s)	208, 421, 472, 757, 1296
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	3 cut(s)	127, 308, 415
Lsp1109I	GCAGC	7 cut(s)	203, 203, 451, 719, 885, 907, 1211
MaeI	CTAG	4 cut(s)	462, 482, 953, 1300
MaeII	ACGT	3 cut(s)	156, 183, 681
MaeIII	GTNAC	2 cut(s)	639, 986
MalI	GATC	5 cut(s)	210, 423, 474, 759, 1298
MboI	GATC	5 cut(s)	208, 421, 472, 757, 1296
MboII	GAAGA	5 cut(s)	98, 109, 968, 973, 1265
MflI	RGATCY	1 cut(s)	421
MlyI	GAGTC	5 cut(s)	115, 257, 542, 710, 852
MmeI	TCCRAC	2 cut(s)	455, 693
MseI	TTAA	7 cut(s)	14, 144, 228, 336, 380, 456, 747
MslI	CAYNNNNRTG	4 cut(s)	789, 864, 934, 1035
MspA1I	CMGCKG	1 cut(s)	898
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	4 cut(s)	260, 321, 663, 692
Mva1269I	GAATGC	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	38, 285, 907
NcoI	CCATGG	1 cut(s)	1191
NdeII	GATC	5 cut(s)	208, 421, 472, 757, 1296
NlaIII	CATG	7 cut(s)	82, 215, 525, 620, 863, 1034, 1195
NlaIV	GGNNCC	2 cut(s)	76, 304
NmuCI	GTSAC	1 cut(s)	986
PciSI	GCTCTTC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	427, 869, 887
PflMI	CCANNNNNTGG	2 cut(s)	187, 203
PkrI	GCNGC	7 cut(s)	193, 218, 441, 734, 897, 900, 1226
PleI	GAGTC	5 cut(s)	114, 257, 541, 710, 851
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
PpsI	GAGTC	5 cut(s)	114, 257, 541, 710, 851
Ppu21I	YACGTR	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	76, 304
PspPI	GGNCC	3 cut(s)	257, 518, 1263
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	898
RsaI	GTAC	2 cut(s)	927, 1205
RsaNI	GTAC	2 cut(s)	926, 1204
RseI	CAYNNNNRTG	4 cut(s)	789, 864, 934, 1035
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	7 cut(s)	14, 144, 228, 336, 380, 456, 747
SatI	GCNGC	7 cut(s)	192, 217, 440, 733, 896, 899, 1225
Sau3AI	GATC	5 cut(s)	208, 421, 472, 757, 1296
Sau96I	GGNCC	3 cut(s)	257, 518, 1263
SchI	GAGTC	5 cut(s)	115, 257, 542, 710, 852
SfcI	CTRYAG	1 cut(s)	893
SinI	GGWCC	2 cut(s)	257, 1263
SmiMI	CAYNNNNRTG	4 cut(s)	789, 864, 934, 1035
SmlI	CTYRAG	2 cut(s)	227, 560
SmoI	CTYRAG	2 cut(s)	227, 560
SpeI	ACTAGT	1 cut(s)	461
SsiI	CCGC	1 cut(s)	1181
SspI	AATATT	1 cut(s)	1164
SspMI	CTAG	4 cut(s)	462, 482, 953, 1300
StyI	CCWWGG	1 cut(s)	1191
TaaI	ACNGT	3 cut(s)	608, 838, 992
TaiI	ACGT	3 cut(s)	159, 186, 684
TaqI	TCGA	2 cut(s)	171, 540
TatI	WGTACW	1 cut(s)	1203
TfiI	GAWTC	3 cut(s)	427, 869, 887
Tru1I	TTAA	7 cut(s)	14, 144, 228, 336, 380, 456, 747
Tru9I	TTAA	7 cut(s)	14, 144, 228, 336, 380, 456, 747
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	7 cut(s)	191, 216, 439, 732, 895, 898, 1224
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	5 cut(s)	95, 237, 876, 890, 938
TspGWI	ACGGA	1 cut(s)	974
Van91I	CCANNNNNTGG	2 cut(s)	187, 203
Vha464I	CTTAAG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	257, 1263
VspI	ATTAAT	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	1254
XapI	RAATTY	2 cut(s)	25, 917
XbaI	TCTAGA	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	4 cut(s)	462, 482, 953, 1300
ZraI	GACGTC	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.