MD04G1244900.v1.1

Putative adipose-regulatory protein (Seipin)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
32079850 .. 32081732
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1244900.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGTTTGGCTTAGCTAAGCTACAACAGCACCCTCACACACTCTCTCTCTCTCTCTCTCTCTCTCAGTCAGAGACTCTCAAAGACATGGAAGCTACTTACCCCAACTCAACATTCACCGACCCACCGCGGCTGCCGCCAGAGACACCAACATTTGATGAAGATGATGAATATGGCTTACCAAAACCAACAGATTGGTTCTCAAAGCTTGCGTCTTTACAAATCGACTTGATTTACAACTGCTTTGCCACTCTCTCCGCTCCCATTTTCTCCCTCCTGTCCGCCGCTTCCGAGTCCTACCACCAAGCCGAGAAGGCCAAAGAAACCGTCGAAACTGTCGTCCACCAGGTCCCCTCCACCATCACCTACGGCAGCGCCCTCCTCCTCAAGAAGATCGGATTCGGGCTTCTCGGGGCCGCTTATGTCTTCATGGTTTTGGTCATGGTTTTGCTTTTATCCGCTCTTTTCGGAATTGGGTTGGTGAATCTTTGGGTGGAGGAGCCGGTGTTCGTCAGGGAAGGGCTGCACTTCGATTACACGGAGCCTCATCCGACGGCTGTCTTTGCTTTTGATTCTGCTGATGATATTTACCGACATAAGAGTTCATATTCTAGGAAGTATGTGAGGGGAATTCCTGTTGGACACACTTTTGATGTCTCTTTGGTGCTTTTGATGCCTGAATCTGATTTCAATAGGGACATTGGTGTCTTTCAGTTGAGTGCAGAACAATTGTCAGTGAACGGTGATGTAATTACAAGATCAAGCCAGCCCTGCATGCTGCGATTTAGAAGCTTCCCGGTTCGACTCACACGAACATTTCTGATGGGAGTTCCTCTGCTGCTAGGAATCTCTGGTGAAACCCAGAAGCTAACGGTCCAAATAATCAAGAACAAGGAAGGGCATTATCCAAGAACTCAAGCCATAAGAGTAACTTTGATTCCAAGGGCCGGAACGTCGTACATTCCACAGTTGTACGAAGCTGAAATTGTGATGAACTCCCAGCTTCCTTGGACTAAACAATTGGTGCGCAGCTGGAAGTGGACATTCTACGTCTGGACCTCTCTATACATTTATGTTATGTTCCTCGTACTTCTCATGATTTGTTGCAGGCCACTCTTCTTTCCCATGACGATGATCAGTGCCGGTACTGCCGCAACCCCAGCAGCAGGGGACGTCGCTGAGGTGCCGAGTTATAGCAGTAACAGAGAATCATCCTCTGCAGAGCGGAGGCGACGTGCTAGGGGATCACGAGCCATATCTAGAGATGACGAGAGCGAGGATGTTCAAGAGCTGCTAAGAAAATGGAAACGAAGCAGAAGCAAAAGCAAGGCAATCTACTTGCAACCTGGGGATTTGAATTTGCCAGAAACTGTTGGCTCATCTGGACCCTCAACGATCAGCATTACAAGAGACGATGCAAGCGTTGCTGCTCCCGAAGAAGTCGGGGACTCGGAATCGGTCTGTTTATAA

Protein Analysis

489

Amino Acids

54.53

Weight (kDa)

6.05

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 147 - 356 1.1e-49 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16460
fragaria_vesca FvH4_6g00490
malus_domestica MD04G1244900.v1.1
prunus_persica Prupe.6G361500_v2.0.a1
pyrus_communis pycom04g21570
rosa_chinensis RchiOBHm_Chr3g0447871
rosa_laevigata RLG00000025965
rosa_multiflora Rmu_sc0020869.1_g000001
rosa_roxburghii Rroxscaffold_6G00426070
rosa_rugosa Rorug02G0606700
rosa_samantha Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana Rw3G000450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1465
AasI GACNNNNNNGTC 1 cut(s) 701
AatII GACGTC 1 cut(s) 1173
Acc16I TGCGCA 1 cut(s) 1025
AccB1I GGYRCC 1 cut(s) 1180
AccBSI CCGCTC 3 cut(s) 257, 458, 1222
AccII CGCG 1 cut(s) 127
AclWI GGATC 1 cut(s) 1249
AcsI RAATTY 2 cut(s) 627, 1354
AcyI GRCGYC 1 cut(s) 1170
AfaI GTAC 4 cut(s) 956, 971, 1086, 1144
AfiI CCNNNNNNNGG 2 cut(s) 944, 1163
AgsI TTSAA 3 cut(s) 688, 1283, 1354
AjiI CACGTC 1 cut(s) 1232
AjnI CCWGG 2 cut(s) 342, 1342
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 488, 520
Alw26I GTCTC 4 cut(s) 65, 134, 658, 1401
AlwI GGATC 1 cut(s) 1249
AlwNI CAGNNNCTG 1 cut(s) 1367
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 4 cut(s) 312, 411, 942, 1106
ApeKI GCWGC 9 cut(s) 130, 369, 520, 775, 835, 1026, 1160, 1288, 1424
ApoI RAATTY 2 cut(s) 627, 1354
ArsI GACNNNNNNTTYG 6 cut(s) 194, 226, 309, 321, 341, 353
AspLEI GCGC 2 cut(s) 374, 1026
AspS9I GGNCC 6 cut(s) 346, 411, 871, 942, 1053, 1382
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 5 cut(s) 106, 352, 490, 752, 863
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 4 cut(s) 346, 871, 1053, 1382
BanI GGYRCC 1 cut(s) 1180
BauI CACGAG 1 cut(s) 1245
BbsI GAAGAC 1 cut(s) 415
BbvCI CCTCAGC 1 cut(s) 1176
BbvI GCAGC 9 cut(s) 117, 381, 507, 762, 822, 1038, 1172, 1275, 1411
BccI CCATC 2 cut(s) 365, 814
BceAI ACGGC 2 cut(s) 382, 567
BciT130I CCWGG 2 cut(s) 344, 1344
BclI TGATCA 1 cut(s) 1131
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 4 cut(s) 65, 134, 658, 1401
BfaI CTAG 4 cut(s) 609, 839, 1236, 1257
BfmI CTRYAG 1 cut(s) 1215
BfoI RGCGCY 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 311
BlpI GCTNAGC 2 cut(s) 10, 15
Bme1390I CCNGG 3 cut(s) 344, 794, 1344
Bme18I GGWCC 4 cut(s) 346, 871, 1053, 1382
BmeT110I CYCGRG 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 1232
BmgT120I GGNCC 6 cut(s) 346, 411, 871, 942, 1053, 1382
BmiI GGNNCC 6 cut(s) 348, 412, 498, 540, 1182, 1384
BmrFI CCNGG 3 cut(s) 344, 794, 1344
BmsI GCATC 2 cut(s) 660, 1402
BoxI GACNNNNGTC 1 cut(s) 554
BpiI GAAGAC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 1176
Bpu1102I GCTNAGC 2 cut(s) 10, 15
BpuEI CTTGAG 2 cut(s) 368, 897
BpuMI CCSGG 1 cut(s) 794
BsaHI GRCGYC 1 cut(s) 1170
BsaJI CCNNGG 4 cut(s) 125, 938, 1004, 1343
BsaXI ACNNNNNCTCC 4 cut(s) 488, 518, 1216, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 944, 1163
Bse118I RCCGGY 2 cut(s) 499, 1139
BseBI CCWGG 2 cut(s) 344, 1344
BseDI CCNNGG 4 cut(s) 125, 938, 1004, 1343
BseGI GGATG 3 cut(s) 544, 1208, 1282
BseLI CCNNNNNNNGG 2 cut(s) 944, 1163
BseMII CTCAG 2 cut(s) 77, 1167
BseRI GAGGAG 3 cut(s) 368, 371, 509
BseXI GCAGC 9 cut(s) 117, 381, 507, 762, 822, 1038, 1172, 1275, 1411
BseYI CCCAGC 2 cut(s) 996, 1156
BsgI GTGCAG 2 cut(s) 506, 738
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 314, 413, 944, 1108
BshNI GGYRCC 1 cut(s) 1180
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 4 cut(s) 500, 794, 945, 1140
BslFI GGGAC 4 cut(s) 332, 707, 1181, 1457
BslI CCNNNNNNNGG 2 cut(s) 944, 1163
BsmAI GTCTC 4 cut(s) 65, 134, 658, 1401
BsmBI CGTCTC 1 cut(s) 1401
BsmFI GGGAC 4 cut(s) 332, 707, 1181, 1457
BsnI GGCC 4 cut(s) 314, 413, 944, 1108
BsoBI CYCGRG 1 cut(s) 407
Bsp143I GATC 5 cut(s) 390, 755, 1131, 1241, 1392
Bsp1720I GCTNAGC 2 cut(s) 10, 15
BspANI GGCC 4 cut(s) 314, 413, 944, 1108
BspCNI CTCAG 2 cut(s) 76, 1168
BspFNI CGCG 1 cut(s) 127
BspHI TCATGA 1 cut(s) 1092
BspLI GGNNCC 6 cut(s) 348, 412, 498, 540, 1182, 1384
BspMAI CTGCAG 1 cut(s) 1219
BspPI GGATC 1 cut(s) 1249
BspT107I GGYRCC 1 cut(s) 1180
BsrBI CCGCTC 3 cut(s) 257, 458, 1222
BsrFI RCCGGY 2 cut(s) 499, 1139
BssAI RCCGGY 2 cut(s) 499, 1139
BssECI CCNNGG 4 cut(s) 125, 938, 1004, 1343
BssMI GATC 5 cut(s) 390, 755, 1131, 1241, 1392
BssNI GRCGYC 1 cut(s) 1170
BssSI CACGAG 1 cut(s) 1245
BssT1I CCWWGG 2 cut(s) 938, 1004
Bst2BI CACGAG 1 cut(s) 1245
Bst2UI CCWGG 2 cut(s) 344, 1344
Bst4CI ACNGT 6 cut(s) 325, 334, 740, 871, 966, 1369
Bst6I CTCTTC 1 cut(s) 1118
BstACI GRCGYC 1 cut(s) 1170
BstAPI GCANNNNNTGC 1 cut(s) 1421
BstC8I GCNNGC 5 cut(s) 207, 764, 773, 1106, 1417
BstDEI CTNAG 5 cut(s) 10, 15, 63, 1176, 1292
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 3 cut(s) 544, 1208, 1282
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 2 cut(s) 374, 1026
BstKTI GATC 5 cut(s) 393, 758, 1134, 1244, 1395
BstMAI GTCTC 4 cut(s) 65, 134, 658, 1401
BstMBI GATC 5 cut(s) 390, 755, 1131, 1241, 1392
BstNI CCWGG 2 cut(s) 344, 1344
BstNSI RCATGY 1 cut(s) 775
BstPAI GACNNNNGTC 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 342, 792, 1342
BstSFI CTRYAG 1 cut(s) 1215
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 9 cut(s) 117, 381, 507, 762, 822, 1038, 1172, 1275, 1411
BstV2I GAAGAC 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 192
BsuRI GGCC 4 cut(s) 314, 413, 944, 1108
BtgI CCRYGG 1 cut(s) 125
BtrI CACGTC 1 cut(s) 1232
BtsCI GGATG 3 cut(s) 544, 1208, 1282
BtsIMutI CAGTG 2 cut(s) 738, 1141
Cac8I GCNNGC 5 cut(s) 207, 764, 773, 1106, 1417
CaiI CAGNNNCTG 1 cut(s) 1367
CciI TCATGA 1 cut(s) 1092
CfoI GCGC 2 cut(s) 374, 1026
Cfr10I RCCGGY 2 cut(s) 499, 1139
Cfr13I GGNCC 6 cut(s) 346, 411, 871, 942, 1053, 1382
Cfr42I CCGCGG 1 cut(s) 128
CseI GACGC 1 cut(s) 198
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 4 cut(s) 955, 970, 1085, 1143
CviAII CATG 6 cut(s) 85, 427, 439, 772, 1093, 1123
CviQI GTAC 4 cut(s) 955, 970, 1085, 1143
DdeI CTNAG 5 cut(s) 10, 15, 63, 1176, 1292
DpnI GATC 5 cut(s) 392, 757, 1133, 1243, 1394
DpnII GATC 5 cut(s) 390, 755, 1131, 1241, 1392
DrdI GACNNNNNNGTC 1 cut(s) 701
DseDI GACNNNNNNGTC 1 cut(s) 701
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
EciI GGCGGA 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 938, 1004
Eco47I GGWCC 4 cut(s) 346, 871, 1053, 1382
Eco88I CYCGRG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 627
EcoRII CCWGG 2 cut(s) 342, 1342
EcoT14I CCWWGG 2 cut(s) 938, 1004
ErhI CCWWGG 2 cut(s) 938, 1004
Esp3I CGTCTC 1 cut(s) 1401
FaeI CATG 6 cut(s) 88, 430, 442, 775, 1096, 1126
FalI AAGNNNNNCTT 2 cut(s) 913, 945
FaqI GGGAC 4 cut(s) 332, 707, 1181, 1457
FatI CATG 6 cut(s) 84, 426, 438, 771, 1092, 1122
FbaI TGATCA 1 cut(s) 1131
FokI GGATG 3 cut(s) 531, 1195, 1289
FspBI CTAG 4 cut(s) 609, 839, 1236, 1257
FspI TGCGCA 1 cut(s) 1025
GlaI GCGC 2 cut(s) 373, 1025
GsaI CCCAGC 2 cut(s) 1000, 1160
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 4 cut(s) 314, 413, 944, 1108
HapII CCGG 4 cut(s) 500, 794, 945, 1140
HgaI GACGC 1 cut(s) 198
HhaI GCGC 2 cut(s) 374, 1026
Hin1I GRCGYC 1 cut(s) 1170
Hin1II CATG 6 cut(s) 88, 430, 442, 775, 1096, 1126
Hin6I GCGC 2 cut(s) 372, 1024
HinP1I GCGC 2 cut(s) 372, 1024
HindIII AAGCTT 2 cut(s) 203, 787
HpaII CCGG 4 cut(s) 500, 794, 945, 1140
HphI GGTGA 5 cut(s) 106, 352, 490, 752, 863
Hpy166II GTNNAC 3 cut(s) 340, 736, 1038
Hpy188I TCNGA 8 cut(s) 70, 289, 395, 467, 549, 682, 819, 1450
Hpy188III TCNNGA 9 cut(s) 385, 883, 1051, 1093, 1245, 1257, 1283, 1380, 1430
Hpy8I GTNNAC 3 cut(s) 340, 736, 1038
Hpy99I CGWCG 5 cut(s) 329, 553, 955, 1175, 1233
HpyAV CCTTC 3 cut(s) 304, 509, 887
HpyCH4III ACNGT 6 cut(s) 325, 334, 740, 871, 966, 1369
HpyCH4IV ACGT 4 cut(s) 950, 1047, 1170, 1231
HpyCH4V TGCA 7 cut(s) 523, 719, 771, 1104, 1217, 1339, 1415
HpyF3I CTNAG 5 cut(s) 10, 15, 63, 1176, 1292
HpySE526I ACGT 4 cut(s) 950, 1047, 1170, 1231
Hsp92I GRCGYC 1 cut(s) 1170
Hsp92II CATG 6 cut(s) 88, 430, 442, 775, 1096, 1126
HspAI GCGC 2 cut(s) 372, 1024
Ksp22I TGATCA 1 cut(s) 1131
KspI CCGCGG 1 cut(s) 128
Kzo9I GATC 5 cut(s) 390, 755, 1131, 1241, 1392
LmnI GCTCC 4 cut(s) 262, 496, 538, 1432
Lsp1109I GCAGC 9 cut(s) 117, 381, 507, 762, 822, 1038, 1172, 1275, 1411
LweI GCATC 2 cut(s) 660, 1402
MabI ACCWGGT 1 cut(s) 342
MaeI CTAG 4 cut(s) 609, 839, 1236, 1257
MaeII ACGT 4 cut(s) 950, 1047, 1170, 1231
MaeIII GTNAC 2 cut(s) 925, 1196
MalI GATC 5 cut(s) 392, 757, 1133, 1243, 1394
MbiI CCGCTC 3 cut(s) 257, 458, 1222
MboI GATC 5 cut(s) 390, 755, 1131, 1241, 1392
MboII GAAGA 5 cut(s) 170, 400, 415, 1105, 1445
MfeI CAATTG 2 cut(s) 725, 1016
MluCI AATT 7 cut(s) 468, 627, 725, 747, 981, 1016, 1354
MlyI GAGTC 4 cut(s) 67, 299, 795, 1439
MmeI TCCRAC 2 cut(s) 572, 616
MslI CAYNNNNRTG 1 cut(s) 1127
MspA1I CMGCKG 2 cut(s) 127, 1029
MspI CCGG 4 cut(s) 500, 794, 945, 1140
MspR9I CCNGG 3 cut(s) 344, 794, 1344
MunI CAATTG 2 cut(s) 725, 1016
MvaI CCWGG 2 cut(s) 344, 1344
MvnI CGCG 1 cut(s) 127
NciI CCSGG 1 cut(s) 794
NdeII GATC 5 cut(s) 390, 755, 1131, 1241, 1392
NlaIII CATG 6 cut(s) 88, 430, 442, 775, 1096, 1126
NlaIV GGNNCC 6 cut(s) 348, 412, 498, 540, 1182, 1384
NmeAIII GCCGAG 2 cut(s) 331, 1209
NsbI TGCGCA 1 cut(s) 1025
NspI RCATGY 1 cut(s) 775
PaeI GCATGC 1 cut(s) 775
PagI TCATGA 1 cut(s) 1092
PcsI WCGNNNNNNNCGW 3 cut(s) 333, 805, 1416
PfeI GAWTC 8 cut(s) 396, 481, 569, 677, 843, 934, 1205, 1451
PleI GAGTC 4 cut(s) 67, 298, 795, 1439
PpsI GAGTC 4 cut(s) 67, 298, 795, 1439
PpuMI RGGWCCY 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 554
PsiI TTATAA 1 cut(s) 1465
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 342, 1342
PspFI CCCAGC 2 cut(s) 996, 1156
PspGI CCWGG 2 cut(s) 342, 1342
PspN4I GGNNCC 6 cut(s) 348, 412, 498, 540, 1182, 1384
PspPI GGNCC 6 cut(s) 346, 411, 871, 942, 1053, 1382
PspPPI RGGWCCY 1 cut(s) 346
PstI CTGCAG 1 cut(s) 1219
PstNI CAGNNNCTG 1 cut(s) 1367
PvuII CAGCTG 1 cut(s) 1029
RsaI GTAC 4 cut(s) 956, 971, 1086, 1144
RsaNI GTAC 4 cut(s) 955, 970, 1085, 1143
RseI CAYNNNNRTG 1 cut(s) 1127
SacII CCGCGG 1 cut(s) 128
Sau3AI GATC 5 cut(s) 390, 755, 1131, 1241, 1392
Sau96I GGNCC 6 cut(s) 346, 411, 871, 942, 1053, 1382
SchI GAGTC 4 cut(s) 67, 299, 795, 1439
ScrFI CCNGG 3 cut(s) 344, 794, 1344
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 2 cut(s) 660, 1402
SfcI CTRYAG 1 cut(s) 1215
Sfr303I CCGCGG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 128
SinI GGWCC 4 cut(s) 346, 871, 1053, 1382
SmiMI CAYNNNNRTG 1 cut(s) 1127
SmlI CTYRAG 2 cut(s) 383, 912
SmoI CTYRAG 2 cut(s) 383, 912
SphI GCATGC 1 cut(s) 775
Sse9I AATT 7 cut(s) 468, 627, 725, 747, 981, 1016, 1354
SspMI CTAG 4 cut(s) 609, 839, 1236, 1257
StyD4I CCNGG 3 cut(s) 342, 792, 1342
StyI CCWWGG 2 cut(s) 938, 1004
TaaI ACNGT 6 cut(s) 325, 334, 740, 871, 966, 1369
TaiI ACGT 4 cut(s) 953, 1050, 1173, 1234
TaqI TCGA 4 cut(s) 222, 327, 528, 799
TaqII GACCGA 1 cut(s) 1444
TasI AATT 7 cut(s) 468, 627, 725, 747, 981, 1016, 1354
TauI GCSGC 5 cut(s) 130, 136, 284, 416, 1151
TfiI GAWTC 8 cut(s) 396, 481, 569, 677, 843, 934, 1205, 1451
TscAI CASTG 2 cut(s) 738, 1141
TseI GCWGC 9 cut(s) 130, 369, 520, 775, 835, 1026, 1160, 1288, 1424
TspDTI ATGAA 5 cut(s) 171, 180, 415, 591, 1004
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 738, 1141
VpaK11BI GGWCC 4 cut(s) 346, 871, 1053, 1382
XapI RAATTY 2 cut(s) 627, 1354
XbaI TCTAGA 1 cut(s) 1256
XceI RCATGY 1 cut(s) 775
XspI CTAG 4 cut(s) 609, 839, 1236, 1257
ZraI GACGTC 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.