FvH4_6g00490

Putative adipose-regulatory protein (Seipin)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
309103 .. 311016
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00490.t1

Sequence Viewer

Length: 1401 bp
ATGGAAACACCAACTTATACTTATGATGATGATGAAGAAGACGAGTTCGAAGACGAGTATCTGATACTAAAGCCCTCAGAGTGGTTCCCAAAGCTAGTATCTTTACAAGCTGATTTGATTTACAACTCCCTCATGGTTCTGTTTCGCCCCATAATCTCCCTCTTCTCATTCGCCTACGAGTCTTACCACCAAGCCGAGAAGGCCAAGGTCACCGTCGAGTCAGCCGTCCAAAATGCCCCCTCCACCATCACACACGGCGCAGTCCTCCTCTTCAAGAAGCTCGGCTTCGGAGTTCTCGGGGCCGCCTATGTCTGCATGGTCATGTTCATGCTTTTGATTCTGGCCACAATTGTTGGAATTGCTGCGGTGCGGCACTGGCTGGAGGAGCCTGTGGTTGTTAGGGAGATGTTGCACTTTGATTACACGCAAGCTAATCCCAAGGCGGTGTTTGTGTTTGGAGGATCAGGATCACTTCAGGGTTTAGCTGCTGGGAGTGGTATTAACTACTTCAAGACTATTAGCCGCAACAAGCGTATGCCTGTTGGGGTTCCTGTTGGACATACTTATACTGTCTCTCTCGAGCTTTTGATGCCGGAATCTGATTTTAATAGGGCCATTGGTGTGTTTCAGATGACTGCAGAAGTATTATCAGCTGACGGTGATGTGATTGCAAAGTTGAGCCAGCCATGTATGCTACGATTTAGAAGCCTCCCAATTCGACTCACAAGAACATTTCTTATGGGCGTACCTCTGATACTAGGCATTTCTGGAGAGACGCAGAAAATAACAGTACAAATACTGAGGCACAAGGAAGTGACTTATCCAAGAACCCAAGCAATAAGAATAACATTAAGTCCAAGAGCCGGTACCTCATATCTTCCGCAGTTGTATGAGGCTGACATCATTCTGAATTCACAGCTGCCTTGGACAAGGCAATTGGTGCACGGTTGGAGATGGACGCTCTACGTCTGGGCGTCTTTCTATTTTTACGTTATGTTCCTAATAACGTATGTAACATGTTGTAGACCACACTTGTCACCAGTGAAAATGATCACAACTGTGGTGAATGTTGCTAATCATGCTATTCGTTATGGATCAACAAGTGATCATGTTCAAAGAGATACAGAAGTACCACGGCGAAGACCCCTTCGAGTGCCTAAACCGGCCACAACGACTAGGAGTAAAGATGATTTTGACCAAAATGAGGATATATCAGAATTGTTGAGTAAGTGGCGGCGGAGCAGAACGAAAAGGAAGGCAATCTATTTGCAAACAGATATGCCAAGTGAGACTGTTGGCACCTCATCTGCACCATCAACGATCAGTATGAGTACTAGAGATGATGATAGTACAGTAGCTACGGAAGAAGATGTTGGGGACTCGGAATCAGTGTGTACCTAG

Protein Analysis

467

Amino Acids

52.58

Weight (kDa)

6.57

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 109 - 330 5.2e-48 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16460
fragaria_vesca FvH4_6g00490
malus_domestica MD04G1244900.v1.1
prunus_persica Prupe.6G361500_v2.0.a1
pyrus_communis pycom04g21570
rosa_chinensis RchiOBHm_Chr3g0447871
rosa_laevigata RLG00000025965
rosa_multiflora Rmu_sc0020869.1_g000001
rosa_roxburghii Rroxscaffold_6G00426070
rosa_rugosa Rorug02G0606700
rosa_samantha Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana Rw3G000450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 866
AccB1I GGYRCC 2 cut(s) 866, 1298
AccI GTMKAC 1 cut(s) 1024
AciI CCGC 8 cut(s) 303, 365, 370, 443, 523, 881, 1234, 1237
AclWI GGATC 3 cut(s) 469, 475, 1102
AcoI YGGCCR 2 cut(s) 342, 1164
AcsI RAATTY 1 cut(s) 910
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 974
AfaI GTAC 7 cut(s) 747, 792, 868, 1131, 1333, 1351, 1396
AfiI CCNNNNNNNGG 3 cut(s) 81, 863, 1204
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 3 cut(s) 274, 511, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 1356, 1388
AleI CACNNNNGTG 1 cut(s) 1058
AluBI AGCT 9 cut(s) 94, 110, 280, 431, 485, 583, 653, 919, 1358
AluI AGCT 9 cut(s) 94, 110, 280, 431, 485, 583, 653, 919, 1358
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 3 cut(s) 577, 767, 1283
Alw44I GTGCAC 1 cut(s) 941
AlwI GGATC 3 cut(s) 469, 475, 1102
Ama87I CYCGRG 2 cut(s) 296, 578
AoxI GGCC 5 cut(s) 201, 300, 342, 612, 1164
ApaLI GTGCAC 1 cut(s) 941
ApeKI GCWGC 3 cut(s) 362, 485, 919
ApoI RAATTY 1 cut(s) 910
Asp718I GGTACC 1 cut(s) 866
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 300, 612
AsuHPI GGTGA 4 cut(s) 202, 671, 1029, 1075
AsuII TTCGAA 1 cut(s) 48
AvaI CYCGRG 2 cut(s) 296, 578
BaeGI GKGCMC 1 cut(s) 945
BaeI ACNNNNGTAYC 4 cut(s) 1113, 1113, 1146, 1146
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 2 cut(s) 866, 1298
BbsI GAAGAC 3 cut(s) 45, 57, 1147
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 3 cut(s) 349, 472, 906
BccI CCATC 3 cut(s) 254, 948, 1321
BceAI ACGGC 3 cut(s) 209, 271, 1151
BclI TGATCA 2 cut(s) 1050, 1105
BcoDI GTCTC 3 cut(s) 577, 767, 1283
BfaI CTAG 5 cut(s) 95, 758, 1176, 1335, 1399
BfmI CTRYAG 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 7 cut(s) 303, 363, 371, 486, 523, 920, 1235
BlsI GCNGC 7 cut(s) 304, 364, 372, 487, 524, 921, 1236
BmcAI AGTACT 1 cut(s) 1333
BmeT110I CYCGRG 2 cut(s) 296, 578
BmgT120I GGNCC 2 cut(s) 300, 612
BmiI GGNNCC 6 cut(s) 86, 301, 387, 549, 868, 1300
BmsI GCATC 1 cut(s) 579
BpiI GAAGAC 3 cut(s) 45, 57, 1147
BpmI CTGGAG 2 cut(s) 401, 789
Bpu14I TTCGAA 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 466
BsaHI GRCGYC 1 cut(s) 974
BsaJI CCNNGG 4 cut(s) 204, 438, 923, 1133
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 863, 1204
Bse118I RCCGGY 2 cut(s) 863, 1162
Bse1I ACTGG 2 cut(s) 380, 1040
Bse8I GATNNNNATC 1 cut(s) 466
BseDI CCNNGG 4 cut(s) 204, 438, 923, 1133
BseJI GATNNNNATC 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 81, 863, 1204
BseMII CTCAG 2 cut(s) 90, 791
BseNI ACTGG 2 cut(s) 380, 1040
BseRI GAGGAG 2 cut(s) 257, 398
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 3 cut(s) 349, 472, 906
BseYI CCCAGC 1 cut(s) 488
BsgI GTGCAG 1 cut(s) 1293
BshFI GGCC 5 cut(s) 203, 302, 344, 614, 1166
BshNI GGYRCC 2 cut(s) 866, 1298
BsiHKAI GWGCWC 1 cut(s) 945
BsiHKCI CYCGRG 2 cut(s) 296, 578
BsiSI CCGG 3 cut(s) 593, 864, 1163
BslFI GGGAC 1 cut(s) 1391
BslI CCNNNNNNNGG 3 cut(s) 81, 863, 1204
BsmAI GTCTC 3 cut(s) 577, 767, 1283
BsmBI CGTCTC 1 cut(s) 767
BsmFI GGGAC 1 cut(s) 1391
BsnI GGCC 5 cut(s) 203, 302, 344, 614, 1166
BsoBI CYCGRG 2 cut(s) 296, 578
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 945
Bsp143I GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
BspACI CCGC 8 cut(s) 303, 365, 370, 443, 523, 881, 1234, 1237
BspANI GGCC 5 cut(s) 203, 302, 344, 614, 1166
BspCNI CTCAG 2 cut(s) 89, 792
BspLI GGNNCC 6 cut(s) 86, 301, 387, 549, 868, 1300
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 3 cut(s) 469, 475, 1102
BspT104I TTCGAA 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 866, 1298
BsrFI RCCGGY 2 cut(s) 863, 1162
BsrI ACTGG 2 cut(s) 380, 1040
BssAI RCCGGY 2 cut(s) 863, 1162
BssECI CCNNGG 4 cut(s) 204, 438, 923, 1133
BssMI GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
BssNI GRCGYC 1 cut(s) 974
BssT1I CCWWGG 3 cut(s) 204, 438, 923
Bst4CI ACNGT 8 cut(s) 214, 571, 659, 790, 947, 1060, 1294, 1354
Bst6I CTCTTC 2 cut(s) 167, 275
BstACI GRCGYC 1 cut(s) 974
BstAPI GCANNNNNTGC 1 cut(s) 940
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 429, 683
BstDEI CTNAG 2 cut(s) 76, 800
BstDSI CCRYGG 1 cut(s) 1133
BstEII GGTNACC 1 cut(s) 208
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 6 cut(s) 464, 470, 1053, 1097, 1108, 1323
BstMAI GTCTC 3 cut(s) 577, 767, 1283
BstMBI GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
BstMWI GCNNNNNNNGC 7 cut(s) 200, 376, 385, 589, 691, 940, 1079
BstNSI RCATGY 1 cut(s) 1020
BstPI GGTNACC 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 945
BstV1I GCAGC 3 cut(s) 349, 472, 906
BstV2I GAAGAC 3 cut(s) 45, 57, 1147
BsuRI GGCC 5 cut(s) 203, 302, 344, 614, 1166
BtgI CCRYGG 1 cut(s) 1133
BtsIMutI CAGTG 3 cut(s) 373, 1047, 1395
Cac8I GCNNGC 2 cut(s) 429, 683
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 2 cut(s) 863, 1162
Cfr13I GGNCC 2 cut(s) 300, 612
CseI GACGC 3 cut(s) 784, 963, 967
Csp6I GTAC 7 cut(s) 746, 791, 867, 1130, 1332, 1350, 1395
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 8 cut(s) 133, 316, 322, 328, 687, 1017, 1079, 1109
CviQI GTAC 7 cut(s) 746, 791, 867, 1130, 1332, 1350, 1395
DdeI CTNAG 2 cut(s) 76, 800
DpnI GATC 6 cut(s) 463, 469, 1052, 1096, 1107, 1322
DpnII GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
EaeI YGGCCR 2 cut(s) 342, 1164
Eam1104I CTCTTC 2 cut(s) 167, 275
EarI CTCTTC 2 cut(s) 167, 275
EciI GGCGGA 1 cut(s) 1252
Eco130I CCWWGG 3 cut(s) 204, 438, 923
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 2 cut(s) 296, 578
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 204, 438, 923
ErhI CCWWGG 3 cut(s) 204, 438, 923
Esp3I CGTCTC 1 cut(s) 767
FaeI CATG 8 cut(s) 136, 319, 325, 331, 690, 1020, 1082, 1112
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 1391
FatI CATG 8 cut(s) 132, 315, 321, 327, 686, 1016, 1078, 1108
FbaI TGATCA 2 cut(s) 1050, 1105
FblI GTMKAC 1 cut(s) 1024
Fnu4HI GCNGC 7 cut(s) 303, 363, 371, 486, 523, 920, 1235
Fsp4HI GCNGC 7 cut(s) 303, 363, 371, 486, 523, 920, 1235
FspBI CTAG 5 cut(s) 95, 758, 1176, 1335, 1399
GlaI GCGC 1 cut(s) 259
GluI GCNGC 7 cut(s) 303, 363, 371, 486, 523, 920, 1235
GsaI CCCAGC 1 cut(s) 492
GsuI CTGGAG 2 cut(s) 401, 789
HaeIII GGCC 5 cut(s) 203, 302, 344, 614, 1166
HapII CCGG 3 cut(s) 593, 864, 1163
HgaI GACGC 3 cut(s) 784, 963, 967
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 974
Hin1II CATG 8 cut(s) 136, 319, 325, 331, 690, 1020, 1082, 1112
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 7 cut(s) 179, 218, 337, 596, 720, 1379, 1385
HpaII CCGG 3 cut(s) 593, 864, 1163
HphI GGTGA 4 cut(s) 202, 671, 1029, 1075
Hpy166II GTNNAC 3 cut(s) 943, 1025, 1395
Hpy188I TCNGA 9 cut(s) 63, 79, 290, 601, 630, 753, 909, 1216, 1384
Hpy188III TCNNGA 5 cut(s) 274, 465, 511, 578, 768
Hpy8I GTNNAC 3 cut(s) 943, 1025, 1395
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 193, 1157, 1249
HpyCH4III ACNGT 8 cut(s) 214, 571, 659, 790, 947, 1060, 1294, 1354
HpyCH4IV ACGT 3 cut(s) 966, 990, 1007
HpyCH4V TGCA 7 cut(s) 315, 412, 638, 671, 943, 1270, 1310
HpyF10VI GCNNNNNNNGC 7 cut(s) 200, 376, 385, 589, 691, 940, 1079
HpyF3I CTNAG 2 cut(s) 76, 800
HpySE526I ACGT 3 cut(s) 966, 990, 1007
Hsp92I GRCGYC 1 cut(s) 974
Hsp92II CATG 8 cut(s) 136, 319, 325, 331, 690, 1020, 1082, 1112
HspAI GCGC 1 cut(s) 258
KpnI GGTACC 1 cut(s) 870
Ksp22I TGATCA 2 cut(s) 1050, 1105
Kzo9I GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
LmnI GCTCC 2 cut(s) 385, 1239
Lsp1109I GCAGC 3 cut(s) 349, 472, 906
LweI GCATC 1 cut(s) 579
MaeI CTAG 5 cut(s) 95, 758, 1176, 1335, 1399
MaeII ACGT 3 cut(s) 966, 990, 1007
MaeIII GTNAC 4 cut(s) 208, 814, 1012, 1035
MalI GATC 6 cut(s) 463, 469, 1052, 1096, 1107, 1322
MboI GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
MboII GAAGA 9 cut(s) 47, 50, 62, 154, 262, 869, 1152, 1376, 1379
MfeI CAATTG 2 cut(s) 348, 935
MhlI GDGCHC 1 cut(s) 945
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 6 cut(s) 348, 357, 714, 910, 935, 1217
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 4 cut(s) 188, 227, 714, 1373
MmeI TCCRAC 3 cut(s) 334, 535, 929
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 3 cut(s) 501, 606, 851
MslI CAYNNNNRTG 4 cut(s) 320, 326, 620, 1058
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 2 cut(s) 653, 919
MspI CCGG 3 cut(s) 593, 864, 1163
MunI CAATTG 2 cut(s) 348, 935
MwoI GCNNNNNNNGC 7 cut(s) 200, 376, 385, 589, 691, 940, 1079
NdeII GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
NlaIII CATG 8 cut(s) 136, 319, 325, 331, 690, 1020, 1082, 1112
NlaIV GGNNCC 6 cut(s) 86, 301, 387, 549, 868, 1300
NmeAIII GCCGAG 2 cut(s) 220, 261
NmuCI GTSAC 3 cut(s) 208, 814, 1035
NspI RCATGY 1 cut(s) 1020
NspV TTCGAA 1 cut(s) 48
OliI CACNNNNGTG 1 cut(s) 1058
PaeR7I CTCGAG 1 cut(s) 578
PciI ACATGT 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 3 cut(s) 337, 596, 1385
PkrI GCNGC 7 cut(s) 304, 364, 372, 487, 524, 921, 1236
PleI GAGTC 4 cut(s) 187, 226, 714, 1373
PpsI GAGTC 4 cut(s) 187, 226, 714, 1373
PscI ACATGT 1 cut(s) 1016
PspEI GGTNACC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 488
PspN4I GGNNCC 6 cut(s) 86, 301, 387, 549, 868, 1300
PspPI GGNCC 2 cut(s) 300, 612
PstI CTGCAG 1 cut(s) 640
PvuII CAGCTG 2 cut(s) 653, 919
RsaI GTAC 7 cut(s) 747, 792, 868, 1131, 1333, 1351, 1396
RsaNI GTAC 7 cut(s) 746, 791, 867, 1130, 1332, 1350, 1395
RseI CAYNNNNRTG 4 cut(s) 320, 326, 620, 1058
SaqAI TTAA 3 cut(s) 501, 606, 851
SatI GCNGC 7 cut(s) 303, 363, 371, 486, 523, 920, 1235
Sau3AI GATC 6 cut(s) 461, 467, 1050, 1094, 1105, 1320
Sau96I GGNCC 2 cut(s) 300, 612
ScaI AGTACT 1 cut(s) 1333
SchI GAGTC 4 cut(s) 188, 227, 714, 1373
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 1 cut(s) 579
SfcI CTRYAG 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 578
SfuI TTCGAA 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 578
SmiMI CAYNNNNRTG 4 cut(s) 320, 326, 620, 1058
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 6 cut(s) 348, 357, 714, 910, 935, 1217
SsiI CCGC 8 cut(s) 303, 365, 370, 443, 523, 881, 1234, 1237
SspMI CTAG 5 cut(s) 95, 758, 1176, 1335, 1399
StyI CCWWGG 3 cut(s) 204, 438, 923
TaaI ACNGT 8 cut(s) 214, 571, 659, 790, 947, 1060, 1294, 1354
TaiI ACGT 3 cut(s) 969, 993, 1010
TaqI TCGA 5 cut(s) 48, 216, 579, 718, 1150
TasI AATT 6 cut(s) 348, 357, 714, 910, 935, 1217
TatI WGTACW 3 cut(s) 790, 1331, 1349
TauI GCSGC 4 cut(s) 305, 373, 525, 1237
TfiI GAWTC 3 cut(s) 337, 596, 1385
Tru1I TTAA 3 cut(s) 501, 606, 851
Tru9I TTAA 3 cut(s) 501, 606, 851
TscAI CASTG 3 cut(s) 380, 1047, 1395
TseFI GTSAC 3 cut(s) 208, 814, 1035
TseI GCWGC 3 cut(s) 362, 485, 919
Tsp45I GTSAC 3 cut(s) 208, 814, 1035
TspDTI ATGAA 2 cut(s) 48, 316
TspGWI ACGGA 1 cut(s) 1376
TspRI CASTG 3 cut(s) 380, 1047, 1395
VneI GTGCAC 1 cut(s) 941
XapI RAATTY 1 cut(s) 910
XceI RCATGY 1 cut(s) 1020
XhoI CTCGAG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 1024
XspI CTAG 5 cut(s) 95, 758, 1176, 1335, 1399
ZrmI AGTACT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.