Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016077

Physical Location & Seq

Genomic Coordinates Reverse (-)

46946360 .. 46948013

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGAACCAGCTCCATTGCTGGAAACACCAACTTTAGACCCTTATGATGATGAAGAAGACGAAGACAAGTATCTGATACCAAAGCCATCAGAGTGGTTCCCAAAGCTAGTGTCTTTACAAGCTGATTTGATTTACAACTCCATCCTGGTTATATGTCACCCCATACTCTCCATCTTCGCTTTCGCCTACGAGTCTTACCACCAAGCCGAGCAGGCCAAGGAGACGGTCGAGTCCGCAGTCCAAAAGCCCCCTCCACCATCATACACGGGGCAGTCGTCCTCATCAAGAAGCTTGGCTTTGGAGTTCTCGGGGCCGCCTATGTCTGCATGGTTTGCTTTGGTGCGGCTCTGGCTGGAAGAGCCTGTGGTTGTTAGGGAGAGGTTGCACTTTGATTACACCCTAGCTCATCCCAAGGCGGTGTTTGTGTTCGGAGGATCAGGGTTAGCTGCTGGGAGTGGTGCTGACTACTTCAAGATTATTAGCAGCAACAGTAAGCGTATGGCTATGGGGGTTCCTGTTGGACACACTTTTACTGTGTCTCTGGAGCTTTTGATGCCGGAGTCTGATTTTAATAGGCACATTGGGGTGTTTCAGATGACTGCAGAAGTATTATCAGCTAATGGTGATGTTATTGCCAAGTCAAGCCAGCCATGTATGCTACGATTTAGAAGCCTCCCAATTCGACTCACAAGAACATTTCTTATGGGTGTACCTCTGATACTGGGCATTTCTGGAGAAACCCAGAAGATAGCAGTACAAATACTGAGGCACAAGGAAGGGACTTATCCAAAAACCCGAGCAATAAGAATAACATTAAGTCCAAGAGCCGGTACCTCACATCTTCCACAGTTGTATGAGGCTGAAATTGTTTTGAATTCACAGCTGCCTTGGACAAAGCAATTGGTGCGCAATTGGAAATGGACGCTCTATGTCTGGGCCTCTTTGTATTGTTACACTATATTCGTAATAACTTATGTAACGTGTTGTAGACCACTCTTGTCACCACTGACAATGATCAAAACTGCGGCCAATTATGTTGCTAATCGTGTTAATCATGACCGATCAACTACTGATCATGTTCAAAGGGATAGAGGCGCGAGTACTGAAGTAAGACGGCGAAGACCCCTTCGAGTGCCTAAAGAGGCCACAACGACACTTAAAGATGATTCTGATCAGAGTGAGGATATTTCAGAGTTGTTGAGAAAGTGGCAGCGGAGCAGAAGCAAAAGAAAGGCAATCTATTTGCAAACGGATTTACCAAGTGAGACTGTTGGCACCTCATCTGCACCATCAACGATTAGTATGAGTACTCCAGAAGATGCAAGTACTGTAACTGCGGAAGAAGATGTTGGGGACTCGGAATCAGTGTGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010344 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

458

Amino Acids

51.34

Weight (kDa)

6.58

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seipin	PF06775	110 - 316	3.2e-47	Putative adipose-regulatory protein (Seipin)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16460
fragaria_vesca	FvH4_6g00490
malus_domestica	MD04G1244900.v1.1
prunus_persica	Prupe.6G361500_v2.0.a1
pyrus_communis	pycom04g21570
rosa_chinensis	RchiOBHm_Chr3g0447871
rosa_laevigata	RLG00000025965
rosa_multiflora	Rmu_sc0020869.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426070
rosa_rugosa	Rorug02G0606700
rosa_samantha	Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana	Rw3G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
Acc16I	TGCGCA	1 cut(s)	908
Acc65I	GGTACC	1 cut(s)	830
AccB1I	GGYRCC	2 cut(s)	830, 1274
AccI	GTMKAC	1 cut(s)	988
AccII	CGCG	1 cut(s)	1097
AciI	CCGC	7 cut(s)	234, 314, 343, 416, 1025, 1213, 1337
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	1125
AfaI	GTAC	7 cut(s)	711, 756, 832, 1102, 1309, 1327, 1372
AfiI	CCNNNNNNNGG	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	980
AgsI	TTSAA	3 cut(s)	472, 874, 1082
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	1332, 1364
AluBI	AGCT	9 cut(s)	11, 106, 122, 291, 404, 446, 547, 617, 883
AluI	AGCT	9 cut(s)	11, 106, 122, 291, 404, 446, 547, 617, 883
Alw26I	GTCTC	3 cut(s)	215, 543, 1259
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	2 cut(s)	307, 795
AoxI	GGCC	5 cut(s)	213, 311, 936, 1026, 1143
ApeKI	GCWGC	4 cut(s)	446, 483, 883, 1210
ApoI	RAATTY	1 cut(s)	874
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
Asp718I	GGTACC	1 cut(s)	830
AspLEI	GCGC	2 cut(s)	909, 1097
AspS9I	GGNCC	2 cut(s)	311, 936
AsuHPI	GGTGA	3 cut(s)	149, 635, 993
AvaI	CYCGRG	2 cut(s)	307, 795
BanI	GGYRCC	2 cut(s)	830, 1274
BbsI	GAAGAC	3 cut(s)	63, 69, 1126
BbvI	GCAGC	4 cut(s)	433, 495, 870, 1222
BccI	CCATC	5 cut(s)	94, 149, 179, 265, 1297
BceAI	ACGGC	1 cut(s)	1130
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	3 cut(s)	1014, 1072, 1171
BcoDI	GTCTC	3 cut(s)	215, 543, 1259
BfaI	CTAG	2 cut(s)	107, 401
BfmI	CTRYAG	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	7 cut(s)	314, 344, 447, 484, 884, 1026, 1211
BlsI	GCNGC	7 cut(s)	315, 345, 448, 485, 885, 1027, 1212
BmcAI	AGTACT	3 cut(s)	1102, 1309, 1327
Bme1390I	CCNGG	1 cut(s)	146
BmeT110I	CYCGRG	2 cut(s)	307, 795
BmgT120I	GGNCC	2 cut(s)	311, 936
BmiI	GGNNCC	6 cut(s)	6, 98, 312, 513, 832, 1276
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	2 cut(s)	543, 1309
BmuI	ACTGGG	1 cut(s)	731
BpiI	GAAGAC	3 cut(s)	63, 69, 1126
BpmI	CTGGAG	3 cut(s)	563, 753, 1296
BsaBI	GATNNNNATC	1 cut(s)	1170
BsaJI	CCNNGG	3 cut(s)	216, 411, 887
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	1170
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	216, 411, 887
BseGI	GGATG	2 cut(s)	141, 406
BseJI	GATNNNNATC	1 cut(s)	1170
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	433, 495, 870, 1222
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	1269
Bsh1236I	CGCG	1 cut(s)	1097
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	215, 313, 938, 1028, 1145
BshNI	GGYRCC	2 cut(s)	830, 1274
BsiEI	CGRYCG	1 cut(s)	228
BsiHKCI	CYCGRG	2 cut(s)	307, 795
BsiSI	CCGG	2 cut(s)	557, 828
BslFI	GGGAC	2 cut(s)	793, 1367
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	3 cut(s)	215, 543, 1259
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	793, 1367
BsnI	GGCC	5 cut(s)	215, 313, 938, 1028, 1145
BsoBI	CYCGRG	2 cut(s)	307, 795
Bsp143I	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
BspACI	CCGC	7 cut(s)	234, 314, 343, 416, 1025, 1213, 1337
BspANI	GGCC	5 cut(s)	215, 313, 938, 1028, 1145
BspCNI	CTCAG	1 cut(s)	756
BspFNI	CGCG	1 cut(s)	1097
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	6 cut(s)	6, 98, 312, 513, 832, 1276
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	2 cut(s)	830, 1274
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	726
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	3 cut(s)	216, 411, 887
BssMI	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
BssT1I	CCWWGG	3 cut(s)	216, 411, 887
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	6 cut(s)	226, 491, 535, 849, 1270, 1330
Bst6I	CTCTTC	1 cut(s)	351
BstAPI	GCANNNNNTGC	2 cut(s)	332, 904
BstC8I	GCNNGC	2 cut(s)	213, 647
BstDEI	CTNAG	2 cut(s)	764, 1374
BstF5I	GGATG	2 cut(s)	141, 406
BstFNI	CGCG	1 cut(s)	1097
BstHHI	GCGC	2 cut(s)	909, 1097
BstKTI	GATC	5 cut(s)	437, 1017, 1064, 1075, 1174
BstMAI	GTCTC	3 cut(s)	215, 543, 1259
BstMBI	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	7 cut(s)	212, 332, 349, 358, 553, 655, 904
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	1 cut(s)	1097
BstV1I	GCAGC	4 cut(s)	433, 495, 870, 1222
BstV2I	GAAGAC	3 cut(s)	63, 69, 1126
BstXI	CCANNNNNNTGG	1 cut(s)	93
BsuRI	GGCC	5 cut(s)	215, 313, 938, 1028, 1145
BtsCI	GGATG	2 cut(s)	141, 406
BtsIMutI	CAGTG	2 cut(s)	1004, 1371
Cac8I	GCNNGC	2 cut(s)	213, 647
CciI	TCATGA	1 cut(s)	1054
CfoI	GCGC	2 cut(s)	909, 1097
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	2 cut(s)	311, 936
CseI	GACGC	1 cut(s)	931
Csp6I	GTAC	7 cut(s)	710, 755, 831, 1101, 1308, 1326, 1371
CviAII	CATG	4 cut(s)	327, 651, 1055, 1076
CviQI	GTAC	7 cut(s)	710, 755, 831, 1101, 1308, 1326, 1371
DdeI	CTNAG	2 cut(s)	764, 1374
DpnI	GATC	5 cut(s)	436, 1016, 1063, 1074, 1173
DpnII	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	1026
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	3 cut(s)	216, 411, 887
Eco57I	CTGAAG	1 cut(s)	1125
Eco88I	CYCGRG	2 cut(s)	307, 795
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	3 cut(s)	216, 411, 887
ErhI	CCWWGG	3 cut(s)	216, 411, 887
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	4 cut(s)	330, 654, 1058, 1079
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	2 cut(s)	793, 1367
FatI	CATG	4 cut(s)	326, 650, 1054, 1075
FbaI	TGATCA	3 cut(s)	1014, 1072, 1171
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	7 cut(s)	314, 344, 447, 484, 884, 1026, 1211
FokI	GGATG	2 cut(s)	128, 393
Fsp4HI	GCNGC	7 cut(s)	314, 344, 447, 484, 884, 1026, 1211
FspBI	CTAG	2 cut(s)	107, 401
FspI	TGCGCA	1 cut(s)	908
GlaI	GCGC	2 cut(s)	908, 1096
GluI	GCNGC	7 cut(s)	314, 344, 447, 484, 884, 1026, 1211
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	3 cut(s)	563, 753, 1296
HaeIII	GGCC	5 cut(s)	215, 313, 938, 1028, 1145
HapII	CCGG	2 cut(s)	557, 828
HgaI	GACGC	1 cut(s)	931
HhaI	GCGC	2 cut(s)	909, 1097
Hin1II	CATG	4 cut(s)	330, 654, 1058, 1079
Hin6I	GCGC	2 cut(s)	907, 1095
HinP1I	GCGC	2 cut(s)	907, 1095
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	7 cut(s)	191, 230, 560, 684, 1166, 1355, 1361
HpaII	CCGG	2 cut(s)	557, 828
HphI	GGTGA	3 cut(s)	149, 635, 993
Hpy166II	GTNNAC	3 cut(s)	710, 989, 1371
Hpy188III	TCNNGA	6 cut(s)	285, 472, 542, 732, 1055, 1313
Hpy8I	GTNNAC	3 cut(s)	710, 989, 1371
HpyAV	CCTTC	2 cut(s)	770, 1136
HpyCH4III	ACNGT	6 cut(s)	226, 491, 535, 849, 1270, 1330
HpyCH4IV	ACGT	1 cut(s)	980
HpyCH4V	TGCA	6 cut(s)	326, 385, 602, 1246, 1286, 1322
HpyF10VI	GCNNNNNNNGC	7 cut(s)	212, 332, 349, 358, 553, 655, 904
HpyF3I	CTNAG	2 cut(s)	764, 1374
HpySE526I	ACGT	1 cut(s)	980
Hsp92II	CATG	4 cut(s)	330, 654, 1058, 1079
HspAI	GCGC	2 cut(s)	907, 1095
KpnI	GGTACC	1 cut(s)	834
Ksp22I	TGATCA	3 cut(s)	1014, 1072, 1171
Kzo9I	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	16, 544, 1215
Lsp1109I	GCAGC	4 cut(s)	433, 495, 870, 1222
LweI	GCATC	2 cut(s)	543, 1309
MaeI	CTAG	2 cut(s)	107, 401
MaeII	ACGT	1 cut(s)	980
MaeIII	GTNAC	5 cut(s)	155, 950, 976, 999, 1330
MalI	GATC	5 cut(s)	436, 1016, 1063, 1074, 1173
MboI	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
MfeI	CAATTG	2 cut(s)	899, 910
MluCI	AATT	6 cut(s)	678, 864, 874, 899, 910, 1030
MlyI	GAGTC	5 cut(s)	200, 239, 569, 678, 1349
MmeI	TCCRAC	1 cut(s)	499
MseI	TTAA	4 cut(s)	570, 815, 1050, 1158
MslI	CAYNNNNRTG	2 cut(s)	91, 584
MspA1I	CMGCKG	2 cut(s)	883, 1213
MspI	CCGG	2 cut(s)	557, 828
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	2 cut(s)	899, 910
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	7 cut(s)	212, 332, 349, 358, 553, 655, 904
NdeII	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
NlaIII	CATG	4 cut(s)	330, 654, 1058, 1079
NlaIV	GGNNCC	6 cut(s)	6, 98, 312, 513, 832, 1276
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	155, 999
NsbI	TGCGCA	1 cut(s)	908
PagI	TCATGA	1 cut(s)	1054
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	1166, 1361
PkrI	GCNGC	7 cut(s)	315, 345, 448, 485, 885, 1027, 1212
PleI	GAGTC	5 cut(s)	199, 238, 568, 678, 1349
PpsI	GAGTC	5 cut(s)	199, 238, 568, 678, 1349
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	6 cut(s)	6, 98, 312, 513, 832, 1276
PspPI	GGNCC	2 cut(s)	311, 936
PstI	CTGCAG	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	883
RsaI	GTAC	7 cut(s)	711, 756, 832, 1102, 1309, 1327, 1372
RsaNI	GTAC	7 cut(s)	710, 755, 831, 1101, 1308, 1326, 1371
RseI	CAYNNNNRTG	2 cut(s)	91, 584
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	570, 815, 1050, 1158
SatI	GCNGC	7 cut(s)	314, 344, 447, 484, 884, 1026, 1211
Sau3AI	GATC	5 cut(s)	434, 1014, 1061, 1072, 1171
Sau96I	GGNCC	2 cut(s)	311, 936
ScaI	AGTACT	3 cut(s)	1102, 1309, 1327
SchI	GAGTC	5 cut(s)	200, 239, 569, 678, 1349
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	2 cut(s)	543, 1309
SfcI	CTRYAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	2 cut(s)	91, 584
Sse9I	AATT	6 cut(s)	678, 864, 874, 899, 910, 1030
SsiI	CCGC	7 cut(s)	234, 314, 343, 416, 1025, 1213, 1337
SspMI	CTAG	2 cut(s)	107, 401
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	3 cut(s)	216, 411, 887
TaaI	ACNGT	6 cut(s)	226, 491, 535, 849, 1270, 1330
TaiI	ACGT	1 cut(s)	983
TaqI	TCGA	3 cut(s)	228, 682, 1129
TaqII	GACCGA	1 cut(s)	1074
TasI	AATT	6 cut(s)	678, 864, 874, 899, 910, 1030
TatI	WGTACW	5 cut(s)	754, 1100, 1307, 1325, 1370
TauI	GCSGC	3 cut(s)	316, 346, 1028
TfiI	GAWTC	2 cut(s)	1166, 1361
Tru1I	TTAA	4 cut(s)	570, 815, 1050, 1158
Tru9I	TTAA	4 cut(s)	570, 815, 1050, 1158
TscAI	CASTG	2 cut(s)	1011, 1371
TseFI	GTSAC	2 cut(s)	155, 999
TseI	GCWGC	4 cut(s)	446, 483, 883, 1210
Tsp45I	GTSAC	2 cut(s)	155, 999
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	1265
TspRI	CASTG	2 cut(s)	1011, 1371
XapI	RAATTY	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	988
XspI	CTAG	2 cut(s)	107, 401
ZrmI	AGTACT	3 cut(s)	1102, 1309, 1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.