pycom04g21570

Putative adipose-regulatory protein (Seipin)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
22668624 .. 22670426
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21570.2

Sequence Viewer

Length: 1449 bp
ATGTTTGGCTTAGCTAAGCTACAACAGCACTCTCACACTCTCTCTCTCAGTGTCAGAGACTCAAAGGACATGGAAGCTACTTACCCCAACTCAACAATCACCGACCCACCGCGGCTGCCGCCAGAGACACCAATATTTGATGAAGATGATGAATATGGCTTACCAAAACCAACAGATTGGTTCTCAAAGCCTGCGTCTTTACAAATCGACTTGATTTACAACTGCTTTACCACTCTCTCCGCTCCCATTTTCTCCCTCCTGTCCGCCGCTTCCGAGTCCTACCACCAAGCCGAGGAGGCCAAAGAAACCGTCGAATCTGTCGTCCACCAGGTCCCCTCCACCATCACCTACGGCAGCGCCCTCCTCCTCAAGAAGATCGGATTCGGGCTTCTCGGGGCCGCTTATGTCTGCATGGTTTTGGTCATGGTTTTGCTTTTATCCGCTCTTTTCGGAATTGGGTTGGTGAATCTTTGGGTGGAGGAACCGGTGTTCGTCAGGGAGCAGCTGCACTTCGATTACACGGAGCCTCATCCGACGGCTGTCTTTGCATTTGGTTCTGCTGATGATATTTACCGACATAAGAGTTCATATTCTAGGAAGCATGTGAGGGGAATTCCTGTTGGACACACTTTTTATGTCTCTTTGGTGCTTTTGATGCCTGAATCTGATTTCAATAGGGACATTGGTGTCTTTCAGTTGAGTGCAGAACAATTGGCAGTGAACGGTGATGTGATTACAAGATCAAGCCAGCCCTGCATGCTGCGATTTAGAAGCCTCCCAGTTCGACTCACACGAACATTTCTGATGGGAGTTCCTCTGCTGCTAGGAATCTCTGGTGAAACCCAGAAGTTAACGGTCCAAATAATCAAGAACAAGGAAGGGCATTATCCAAGAACTCAAGCCATAAGAGTAACTTTAATTCCAAGGGCCGGAACCTCGTACATTCCACAGTTGTACGAAGCTGAAATTGTGATGAACTCCCAGCTTCCTTGGACTAAACAATTGGTGCGCAGCTGGAAGTGGACATTCTACGTCTGGACCTCTCTATACATTTATGTTATGTTCCTCGTACTTCTCATGATTTGGTGCAGGCCGCTCTTCTTTCCAATGACGATGATCAGTGCCAGTACTGCCGCAACCCCAGCAGCAGGGGACGTCGCTGAGGTCCCGAGTTATAGCAGTAAAAGAGAATCATCCTCCGCAGAGCGGAGACGTGCTAGGGGATCACGAGCCATATCTAGAGATGACGAGAGCGAGGATGTTCAAGAGCTGCTAAGAAAATGGCAACGAAGCAGAAGCAAAAGAAAGGCAATCTACTTGCAACGTGGTGATTTGAATTTGCCAGAAACTGTCGGCTCATCTGGACCCTCAACAATCAGCATTACAAGAGACGATGCAAGTGTTGCTGCTCCTGAGGAAGTCGGGGACTCGGAATCGGTCTGTTTATAA

Protein Analysis

483

Amino Acids

54.04

Weight (kDa)

6.39

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16460
fragaria_vesca FvH4_6g00490
malus_domestica MD04G1244900.v1.1
prunus_persica Prupe.6G361500_v2.0.a1
pyrus_communis pycom04g21570
rosa_chinensis RchiOBHm_Chr3g0447871
rosa_laevigata RLG00000025965
rosa_multiflora Rmu_sc0020869.1_g000001
rosa_roxburghii Rroxscaffold_6G00426070
rosa_rugosa Rorug02G0606700
rosa_samantha Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana Rw3G000450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1447
AasI GACNNNNNNGTC 1 cut(s) 686
AatII GACGTC 1 cut(s) 1158
Acc16I TGCGCA 1 cut(s) 1010
AccBSI CCGCTC 4 cut(s) 242, 443, 1096, 1207
AccII CGCG 1 cut(s) 112
AclWI GGATC 1 cut(s) 1231
AcsI RAATTY 2 cut(s) 612, 1336
AcyI GRCGYC 1 cut(s) 1155
AfaI GTAC 4 cut(s) 941, 956, 1071, 1129
AfiI CCNNNNNNNGG 4 cut(s) 292, 929, 1148, 1206
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 3 cut(s) 673, 1265, 1336
AjiI CACGTC 1 cut(s) 1214
AjnI CCWGG 1 cut(s) 327
AloI GAACNNNNNNTCC 2 cut(s) 473, 505
AluBI AGCT 8 cut(s) 14, 19, 77, 505, 962, 985, 1014, 1270
AluI AGCT 8 cut(s) 14, 19, 77, 505, 962, 985, 1014, 1270
Alw26I GTCTC 5 cut(s) 51, 119, 643, 1204, 1383
AlwI GGATC 1 cut(s) 1231
AlwNI CAGNNNCTG 1 cut(s) 1349
Ama87I CYCGRG 2 cut(s) 392, 1168
AoxI GGCC 4 cut(s) 297, 396, 927, 1091
ApoI RAATTY 2 cut(s) 612, 1336
ArsI GACNNNNNNTTYG 6 cut(s) 179, 211, 294, 306, 326, 338
AsiGI ACCGGT 1 cut(s) 484
AspLEI GCGC 2 cut(s) 359, 1011
AspS9I GGNCC 7 cut(s) 331, 396, 856, 927, 1038, 1165, 1364
AsuHPI GGTGA 6 cut(s) 91, 337, 475, 737, 848, 1340
AvaI CYCGRG 2 cut(s) 392, 1168
AvaII GGWCC 5 cut(s) 331, 856, 1038, 1165, 1364
AxyI CCTNAGG 1 cut(s) 1413
BauI CACGAG 1 cut(s) 1227
BbvCI CCTCAGC 1 cut(s) 1161
BccI CCATC 2 cut(s) 350, 799
BceAI ACGGC 2 cut(s) 367, 552
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 1116
BcoDI GTCTC 5 cut(s) 51, 119, 643, 1204, 1383
BfaI CTAG 4 cut(s) 594, 824, 1218, 1239
BfoI RGCGCY 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 296
BlpI GCTNAGC 2 cut(s) 10, 15
BmcAI AGTACT 1 cut(s) 1129
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 5 cut(s) 331, 856, 1038, 1165, 1364
BmeT110I CYCGRG 2 cut(s) 392, 1168
BmgBI CACGTC 1 cut(s) 1214
BmgT120I GGNCC 7 cut(s) 331, 396, 856, 927, 1038, 1165, 1364
BmiI GGNNCC 7 cut(s) 333, 397, 483, 525, 934, 1167, 1366
BmrFI CCNGG 1 cut(s) 329
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 2 cut(s) 645, 1384
BmuI ACTGGG 1 cut(s) 773
BoxI GACNNNNGTC 1 cut(s) 539
Bpu10I CCTNAGC 1 cut(s) 1161
Bpu1102I GCTNAGC 2 cut(s) 10, 15
BpuEI CTTGAG 2 cut(s) 353, 882
BsaHI GRCGYC 1 cut(s) 1155
BsaJI CCNNGG 4 cut(s) 110, 291, 923, 989
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 929, 1148, 1206
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 779, 1125
Bse21I CCTNAGG 1 cut(s) 1413
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 4 cut(s) 110, 291, 923, 989
BseGI GGATG 3 cut(s) 529, 1193, 1264
BseLI CCNNNNNNNGG 4 cut(s) 292, 929, 1148, 1206
BseMII CTCAG 3 cut(s) 61, 1152, 1404
BseNI ACTGG 2 cut(s) 779, 1125
BseRI GAGGAG 3 cut(s) 308, 353, 356
BseYI CCCAGC 2 cut(s) 981, 1141
BsgI GTGCAG 3 cut(s) 491, 723, 1108
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 4 cut(s) 299, 398, 929, 1093
BshTI ACCGGT 1 cut(s) 484
BsiHKCI CYCGRG 2 cut(s) 392, 1168
BsiSI CCGG 2 cut(s) 485, 930
BslFI GGGAC 5 cut(s) 317, 692, 1151, 1166, 1439
BslI CCNNNNNNNGG 4 cut(s) 292, 929, 1148, 1206
BsmAI GTCTC 5 cut(s) 51, 119, 643, 1204, 1383
BsmBI CGTCTC 2 cut(s) 1204, 1383
BsmFI GGGAC 5 cut(s) 317, 692, 1151, 1166, 1439
BsnI GGCC 4 cut(s) 299, 398, 929, 1093
BsoBI CYCGRG 2 cut(s) 392, 1168
Bsp143I GATC 4 cut(s) 375, 740, 1116, 1223
Bsp1720I GCTNAGC 2 cut(s) 10, 15
BspANI GGCC 4 cut(s) 299, 398, 929, 1093
BspCNI CTCAG 3 cut(s) 60, 1153, 1405
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 7 cut(s) 333, 397, 483, 525, 934, 1167, 1366
BspPI GGATC 1 cut(s) 1231
BspQI GCTCTTC 1 cut(s) 1103
BsrBI CCGCTC 4 cut(s) 242, 443, 1096, 1207
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 2 cut(s) 779, 1125
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 4 cut(s) 110, 291, 923, 989
BssMI GATC 4 cut(s) 375, 740, 1116, 1223
BssNI GRCGYC 1 cut(s) 1155
BssSI CACGAG 1 cut(s) 1227
BssT1I CCWWGG 2 cut(s) 923, 989
Bst2BI CACGAG 1 cut(s) 1227
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 5 cut(s) 310, 725, 856, 951, 1351
Bst6I CTCTTC 1 cut(s) 1103
BstACI GRCGYC 1 cut(s) 1155
BstAPI GCANNNNNTGC 1 cut(s) 1403
BstC8I GCNNGC 4 cut(s) 192, 749, 758, 1091
BstDEI CTNAG 6 cut(s) 10, 15, 47, 1161, 1274, 1413
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 529, 1193, 1264
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 359, 1011
BstKTI GATC 4 cut(s) 378, 743, 1119, 1226
BstMAI GTCTC 5 cut(s) 51, 119, 643, 1204, 1383
BstMBI GATC 4 cut(s) 375, 740, 1116, 1223
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 605, 760
BstPAI GACNNNNGTC 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 327
BstUI CGCG 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 1413
BsuRI GGCC 4 cut(s) 299, 398, 929, 1093
BtgI CCRYGG 1 cut(s) 110
BtrI CACGTC 1 cut(s) 1214
BtsCI GGATG 3 cut(s) 529, 1193, 1264
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 3 cut(s) 55, 723, 1126
Cac8I GCNNGC 4 cut(s) 192, 749, 758, 1091
CaiI CAGNNNCTG 1 cut(s) 1349
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 2 cut(s) 359, 1011
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 7 cut(s) 331, 396, 856, 927, 1038, 1165, 1364
Cfr42I CCGCGG 1 cut(s) 113
CseI GACGC 1 cut(s) 183
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 4 cut(s) 940, 955, 1070, 1128
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 6 cut(s) 70, 412, 424, 602, 757, 1078
CviQI GTAC 4 cut(s) 940, 955, 1070, 1128
DdeI CTNAG 6 cut(s) 10, 15, 47, 1161, 1274, 1413
DpnI GATC 4 cut(s) 377, 742, 1118, 1225
DpnII GATC 4 cut(s) 375, 740, 1116, 1223
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
Eam1104I CTCTTC 1 cut(s) 1103
EarI CTCTTC 1 cut(s) 1103
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 923, 989
Eco47I GGWCC 5 cut(s) 331, 856, 1038, 1165, 1364
Eco81I CCTNAGG 1 cut(s) 1413
Eco88I CYCGRG 2 cut(s) 392, 1168
EcoO109I RGGNCCY 2 cut(s) 331, 1165
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 923, 989
ErhI CCWWGG 2 cut(s) 923, 989
Esp3I CGTCTC 2 cut(s) 1204, 1383
FaeI CATG 6 cut(s) 73, 415, 427, 605, 760, 1081
FalI AAGNNNNNCTT 2 cut(s) 898, 930
FaqI GGGAC 5 cut(s) 317, 692, 1151, 1166, 1439
FatI CATG 6 cut(s) 69, 411, 423, 601, 756, 1077
FbaI TGATCA 1 cut(s) 1116
FokI GGATG 3 cut(s) 516, 1180, 1271
FspBI CTAG 4 cut(s) 594, 824, 1218, 1239
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 2 cut(s) 358, 1010
GsaI CCCAGC 2 cut(s) 985, 1145
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 4 cut(s) 299, 398, 929, 1093
HapII CCGG 2 cut(s) 485, 930
HgaI GACGC 1 cut(s) 183
HhaI GCGC 2 cut(s) 359, 1011
Hin1I GRCGYC 1 cut(s) 1155
Hin1II CATG 6 cut(s) 73, 415, 427, 605, 760, 1081
Hin6I GCGC 2 cut(s) 357, 1009
HinP1I GCGC 2 cut(s) 357, 1009
HincII GTYRAC 1 cut(s) 852
HindII GTYRAC 1 cut(s) 852
HpaI GTTAAC 1 cut(s) 852
HpaII CCGG 2 cut(s) 485, 930
HphI GGTGA 6 cut(s) 91, 337, 475, 737, 848, 1340
Hpy166II GTNNAC 4 cut(s) 325, 721, 852, 1023
Hpy188I TCNGA 8 cut(s) 56, 274, 380, 452, 534, 667, 804, 1432
Hpy8I GTNNAC 4 cut(s) 325, 721, 852, 1023
Hpy99I CGWCG 3 cut(s) 314, 538, 1160
HpyAV CCTTC 1 cut(s) 872
HpyCH4III ACNGT 5 cut(s) 310, 725, 856, 951, 1351
HpyCH4IV ACGT 4 cut(s) 1032, 1155, 1213, 1324
HpyCH4V TGCA 8 cut(s) 411, 508, 548, 704, 756, 1089, 1321, 1397
HpyF3I CTNAG 6 cut(s) 10, 15, 47, 1161, 1274, 1413
HpySE526I ACGT 4 cut(s) 1032, 1155, 1213, 1324
Hsp92I GRCGYC 1 cut(s) 1155
Hsp92II CATG 6 cut(s) 73, 415, 427, 605, 760, 1081
HspAI GCGC 2 cut(s) 357, 1009
Ksp22I TGATCA 1 cut(s) 1116
KspAI GTTAAC 1 cut(s) 852
KspI CCGCGG 1 cut(s) 113
Kzo9I GATC 4 cut(s) 375, 740, 1116, 1223
LguI GCTCTTC 1 cut(s) 1103
LmnI GCTCC 4 cut(s) 247, 499, 523, 1414
LweI GCATC 2 cut(s) 645, 1384
MabI ACCWGGT 1 cut(s) 327
MaeI CTAG 4 cut(s) 594, 824, 1218, 1239
MaeII ACGT 4 cut(s) 1032, 1155, 1213, 1324
MaeIII GTNAC 1 cut(s) 910
MalI GATC 4 cut(s) 377, 742, 1118, 1225
MbiI CCGCTC 4 cut(s) 242, 443, 1096, 1207
MboI GATC 4 cut(s) 375, 740, 1116, 1223
MboII GAAGA 3 cut(s) 155, 385, 1090
MfeI CAATTG 2 cut(s) 710, 1001
MluCI AATT 7 cut(s) 453, 612, 710, 918, 966, 1001, 1336
MlyI GAGTC 4 cut(s) 53, 284, 780, 1421
MmeI TCCRAC 2 cut(s) 557, 601
MseI TTAA 2 cut(s) 851, 917
MspA1I CMGCKG 3 cut(s) 112, 505, 1014
MspI CCGG 2 cut(s) 485, 930
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 2 cut(s) 710, 1001
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 112
NdeII GATC 4 cut(s) 375, 740, 1116, 1223
NlaIII CATG 6 cut(s) 73, 415, 427, 605, 760, 1081
NlaIV GGNNCC 7 cut(s) 333, 397, 483, 525, 934, 1167, 1366
NmeAIII GCCGAG 1 cut(s) 316
NsbI TGCGCA 1 cut(s) 1010
NspI RCATGY 2 cut(s) 605, 760
PaeI GCATGC 1 cut(s) 760
PagI TCATGA 1 cut(s) 1077
PciSI GCTCTTC 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 790
PfeI GAWTC 7 cut(s) 314, 381, 466, 662, 828, 1190, 1433
PinAI ACCGGT 1 cut(s) 484
PleI GAGTC 4 cut(s) 53, 283, 780, 1421
PpsI GAGTC 4 cut(s) 53, 283, 780, 1421
PpuMI RGGWCCY 2 cut(s) 331, 1165
PshAI GACNNNNGTC 1 cut(s) 539
PsiI TTATAA 1 cut(s) 1447
Psp5II RGGWCCY 2 cut(s) 331, 1165
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 981, 1141
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 7 cut(s) 333, 397, 483, 525, 934, 1167, 1366
PspPI GGNCC 7 cut(s) 331, 396, 856, 927, 1038, 1165, 1364
PspPPI RGGWCCY 2 cut(s) 331, 1165
PstNI CAGNNNCTG 1 cut(s) 1349
PvuII CAGCTG 2 cut(s) 505, 1014
RsaI GTAC 4 cut(s) 941, 956, 1071, 1129
RsaNI GTAC 4 cut(s) 940, 955, 1070, 1128
SacII CCGCGG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 1103
SaqAI TTAA 2 cut(s) 851, 917
Sau3AI GATC 4 cut(s) 375, 740, 1116, 1223
Sau96I GGNCC 7 cut(s) 331, 396, 856, 927, 1038, 1165, 1364
ScaI AGTACT 1 cut(s) 1129
SchI GAGTC 4 cut(s) 53, 284, 780, 1421
ScrFI CCNGG 1 cut(s) 329
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 2 cut(s) 645, 1384
Sfr303I CCGCGG 1 cut(s) 113
SgrBI CCGCGG 1 cut(s) 113
SinI GGWCC 5 cut(s) 331, 856, 1038, 1165, 1364
SmlI CTYRAG 2 cut(s) 368, 897
SmoI CTYRAG 2 cut(s) 368, 897
SphI GCATGC 1 cut(s) 760
Sse9I AATT 7 cut(s) 453, 612, 710, 918, 966, 1001, 1336
SspI AATATT 1 cut(s) 135
SspMI CTAG 4 cut(s) 594, 824, 1218, 1239
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 2 cut(s) 923, 989
TaaI ACNGT 5 cut(s) 310, 725, 856, 951, 1351
TaiI ACGT 4 cut(s) 1035, 1158, 1216, 1327
TaqI TCGA 4 cut(s) 207, 312, 513, 784
TaqII GACCGA 1 cut(s) 1426
TasI AATT 7 cut(s) 453, 612, 710, 918, 966, 1001, 1336
TatI WGTACW 1 cut(s) 1127
TauI GCSGC 6 cut(s) 115, 121, 269, 401, 1096, 1136
TfiI GAWTC 7 cut(s) 314, 381, 466, 662, 828, 1190, 1433
Tru1I TTAA 2 cut(s) 851, 917
Tru9I TTAA 2 cut(s) 851, 917
TscAI CASTG 3 cut(s) 55, 723, 1126
TspDTI ATGAA 4 cut(s) 156, 165, 576, 989
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 3 cut(s) 55, 723, 1126
VpaK11BI GGWCC 5 cut(s) 331, 856, 1038, 1165, 1364
XapI RAATTY 2 cut(s) 612, 1336
XbaI TCTAGA 1 cut(s) 1238
XceI RCATGY 2 cut(s) 605, 760
XspI CTAG 4 cut(s) 594, 824, 1218, 1239
ZraI GACGTC 1 cut(s) 1156
ZrmI AGTACT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.