Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016077

Physical Location & Seq

Genomic Coordinates Forward (+)

30460509 .. 30462486

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAACCTGCTCAGCCCACATCAACCTTCAGCAACCCACCACCACCAGAAACACCAGTATTGGAGAATGATGAAGCAGAATACGGCCAATATGACTGTGATGAGTATCTGATACCAAAACCATCAGAGTGGTTCCCAAAGCTCGTATCTTTTCAAGCAGATTTAATTTACAACTGCATGGCCACTCTGTCTGCCCCCATTTTCTCCCTCTTGTCTGTGGCCTCTGAGTCTTACCACCAAGTCGAGCAGACCAAAGACACCGTTGAATCCGCCGTCCACCAGGTTCCCTCTACCCTCACACATGGCAGCACCATCCTCCTCAAGAAGCTTGGTTTTGGGTTGCTTGGGGCTGCTTATGTCTGTATGGTTTTGGTCATGGTTTTAATTCTATCTTTTCTTTTGGGTGTTGGGTTGGTCAATCTTTGGGTGGAGGAGCCTGTGTTTGTGAGAGACAGGTTGCACTTTGATTACACTGACCCTCATCCAACGGCTGTCTTTGCTTTTGGTGGGGTTCCTGTTGGACACACTTTTTATGTCTCTTTGGTTCTATTGATGCCTGAATCTGATTTCAACAGGGGCATTGGGGTCTTTCAGATGAGTGCAGAACTATTATCAGTGAATGGTGATGTGATTGCAAAGTCAAGCCAGCCCTGCATGTTACGATTTATGAGCCTCCCGGTTAGACTCACACGAACATTTCTTATGGGCGTACCGTTGCTACTAGGAATCTCTGGAGAAACCCAGAAGTTAGCCATGCAAATACTCGAGCATAAGGAAGGCCATTTTCCAAGAACCCAAGCCATAAGAGTAACTTTATTACCAAGAGCTGGAACCTCGTATCTTCCCCAGTTGTACGAGGCTGAAATTTTATTGAATTCCCAGCTGCCTTGGATGAAACATTTGGTGCGCAGTTGGAAGTTGACTTTTTACGTCTGGACCTCTTTATATACCTATGTTTTGTTCCTCATAATTCTCATACTTTTCTGCAAACCACTCTTGCTGCCAATGACAATGATCACAGCTACTGCCGCAGCAAATGTCAGTGACCAAAGTTACACCGAGACACAATCACAAGCCACATCTCGACCACGACCACGACGACGCCATAGTAGGGAATCACAAGCCCAATCTAGAGACGTTGAAAGTGAGGATGTTCAAGAGTTGTTGAGAAAATGGCAACGCAGCAGAAGCAAAAGAAAGGCAATGTATTTGCAACCTGGGGATTTGGATTTGGGAGCTGCAGAAACTATTGGCTCATCTGCAGCCTCAACAATTAGTATTACCAGAGAAGATGCAAGTGTAGCTGCTGAAGATGTTGGGGACTTGGAATCAGTGTGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010344 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

448

Amino Acids

49.89

Weight (kDa)

5.54

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16460
fragaria_vesca	FvH4_6g00490
malus_domestica	MD04G1244900.v1.1
prunus_persica	Prupe.6G361500_v2.0.a1
pyrus_communis	pycom04g21570
rosa_chinensis	RchiOBHm_Chr3g0447871
rosa_laevigata	RLG00000025965
rosa_multiflora	Rmu_sc0020869.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426070
rosa_rugosa	Rorug02G0606700
rosa_samantha	Rh3AG005800 Rh3BG005600 Rh3CG005700 Rh3DG006000
rosa_wichuraiana	Rw3G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1342
Acc16I	TGCGCA	1 cut(s)	908
Acc36I	ACCTGC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	827
AciI	CCGC	2 cut(s)	270, 1029
AcoI	YGGCCR	2 cut(s)	85, 180
AcsI	RAATTY	2 cut(s)	864, 874
AcuI	CTGAAG	2 cut(s)	13, 1329
AcyI	GRCGYC	1 cut(s)	1102
AfaI	GTAC	2 cut(s)	711, 854
AfiI	CCNNNNNNNGG	2 cut(s)	827, 1111
AgsI	TTSAA	6 cut(s)	155, 266, 571, 874, 1142, 1157
AjnI	CCWGG	2 cut(s)	279, 1216
AluBI	AGCT	7 cut(s)	142, 328, 827, 883, 1022, 1238, 1304
AluI	AGCT	7 cut(s)	142, 328, 827, 883, 1022, 1238, 1304
Alw26I	GTCTC	4 cut(s)	444, 541, 1055, 1128
AlwNI	CAGNNNCTG	1 cut(s)	1025
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	4 cut(s)	85, 180, 219, 778
ApeKI	GCWGC	9 cut(s)	306, 350, 883, 1000, 1031, 1182, 1238, 1262, 1304
ApoI	RAATTY	2 cut(s)	864, 874
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	936
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	936
BalI	TGGCCA	1 cut(s)	182
BbvI	GCAGC	9 cut(s)	318, 337, 870, 987, 1043, 1194, 1225, 1274, 1291
BccI	CCATC	2 cut(s)	130, 320
BceAI	ACGGC	3 cut(s)	100, 257, 504
BciT130I	CCWGG	2 cut(s)	281, 1218
BclI	TGATCA	1 cut(s)	1014
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	4 cut(s)	444, 541, 1055, 1128
BfaI	CTAG	2 cut(s)	722, 1131
BfmI	CTRYAG	2 cut(s)	1239, 1260
BfuAI	ACCTGC	1 cut(s)	16
BlpI	GCTNAGC	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	281, 677, 1218
Bme18I	GGWCC	1 cut(s)	936
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	936
BmiI	GGNNCC	6 cut(s)	6, 134, 285, 435, 513, 832
BmrFI	CCNGG	3 cut(s)	281, 677, 1218
BmrI	ACTGGG	1 cut(s)	841
BmsI	GCATC	2 cut(s)	543, 1282
BmuI	ACTGGG	1 cut(s)	841
BpmI	CTGGAG	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	1102
BsaJI	CCNNGG	2 cut(s)	887, 1217
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 1111
Bse1I	ACTGG	2 cut(s)	56, 847
Bse3DI	GCAATG	1 cut(s)	1209
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	281, 1218
BseDI	CCNNGG	2 cut(s)	887, 1217
BseGI	GGATG	4 cut(s)	312, 481, 897, 1156
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	827, 1111
BseMI	GCAATG	1 cut(s)	1209
BseMII	CTCAG	2 cut(s)	26, 216
BseNI	ACTGG	2 cut(s)	56, 847
BseRI	GAGGAG	2 cut(s)	308, 446
BseXI	GCAGC	9 cut(s)	318, 337, 870, 987, 1043, 1194, 1225, 1274, 1291
BseYI	CCCAGC	1 cut(s)	879
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	4 cut(s)	87, 182, 221, 780
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	1 cut(s)	1334
BslI	CCNNNNNNNGG	2 cut(s)	827, 1111
BsmAI	GTCTC	4 cut(s)	444, 541, 1055, 1128
BsmBI	CGTCTC	1 cut(s)	1128
BsmFI	GGGAC	1 cut(s)	1334
BsnI	GGCC	4 cut(s)	87, 182, 221, 780
BsoBI	CYCGRG	1 cut(s)	764
Bsp143I	GATC	1 cut(s)	1014
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	270, 1029
BspANI	GGCC	4 cut(s)	87, 182, 221, 780
BspCNI	CTCAG	2 cut(s)	25, 217
BspLI	GGNNCC	6 cut(s)	6, 134, 285, 435, 513, 832
BspMAI	CTGCAG	2 cut(s)	1243, 1264
BspMI	ACCTGC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	1209
BsrI	ACTGG	2 cut(s)	56, 847
BssECI	CCNNGG	2 cut(s)	887, 1217
BssMI	GATC	1 cut(s)	1014
BssNI	GRCGYC	1 cut(s)	1102
BssT1I	CCWWGG	1 cut(s)	887
Bst2UI	CCWGG	2 cut(s)	281, 1218
Bst4CI	ACNGT	3 cut(s)	98, 262, 714
BstACI	GRCGYC	1 cut(s)	1102
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	2 cut(s)	12, 225
BstF5I	GGATG	4 cut(s)	312, 481, 897, 1156
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	1 cut(s)	1017
BstMAI	GTCTC	4 cut(s)	444, 541, 1055, 1128
BstMBI	GATC	1 cut(s)	1014
BstMWI	GCNNNNNNNGC	5 cut(s)	497, 651, 1028, 1188, 1301
BstNI	CCWGG	2 cut(s)	281, 1218
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	3 cut(s)	279, 675, 1216
BstSFI	CTRYAG	2 cut(s)	1239, 1260
BstV1I	GCAGC	9 cut(s)	318, 337, 870, 987, 1043, 1194, 1225, 1274, 1291
BstXI	CCANNNNNNTGG	1 cut(s)	129
BsuRI	GGCC	4 cut(s)	87, 182, 221, 780
BtsCI	GGATG	4 cut(s)	312, 481, 897, 1156
BtsIMutI	CAGTG	4 cut(s)	471, 621, 1048, 1338
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	647
CaiI	CAGNNNCTG	1 cut(s)	1025
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	936
CseI	GACGC	1 cut(s)	1110
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	710, 853
CviAII	CATG	5 cut(s)	178, 302, 376, 655, 754
CviQI	GTAC	2 cut(s)	710, 853
DdeI	CTNAG	2 cut(s)	12, 225
DpnI	GATC	1 cut(s)	1016
DpnII	GATC	1 cut(s)	1014
EaeI	YGGCCR	2 cut(s)	85, 180
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	887
Eco47I	GGWCC	1 cut(s)	936
Eco57I	CTGAAG	2 cut(s)	13, 1329
Eco88I	CYCGRG	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	2 cut(s)	279, 1216
EcoT14I	CCWWGG	1 cut(s)	887
ErhI	CCWWGG	1 cut(s)	887
Esp3I	CGTCTC	1 cut(s)	1128
FaeI	CATG	5 cut(s)	181, 305, 379, 658, 757
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	1 cut(s)	1334
FatI	CATG	5 cut(s)	177, 301, 375, 654, 753
FbaI	TGATCA	1 cut(s)	1014
FokI	GGATG	4 cut(s)	299, 468, 904, 1163
FspBI	CTAG	2 cut(s)	722, 1131
FspI	TGCGCA	1 cut(s)	908
GlaI	GCGC	1 cut(s)	908
GsaI	CCCAGC	1 cut(s)	883
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	4 cut(s)	87, 182, 221, 780
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	1 cut(s)	1110
HhaI	GCGC	1 cut(s)	909
Hin1I	GRCGYC	1 cut(s)	1102
Hin1II	CATG	5 cut(s)	181, 305, 379, 658, 757
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	7 cut(s)	227, 266, 560, 684, 726, 1115, 1328
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	277, 921
Hpy188I	TCNGA	5 cut(s)	111, 127, 226, 565, 594
Hpy188III	TCNNGA	6 cut(s)	322, 732, 934, 1083, 1131, 1157
Hpy8I	GTNNAC	2 cut(s)	277, 921
Hpy99I	CGWCG	2 cut(s)	1101, 1104
HpyAV	CCTTC	2 cut(s)	37, 770
HpyCH4III	ACNGT	3 cut(s)	98, 262, 714
HpyCH4IV	ACGT	2 cut(s)	930, 1137
HpyF10VI	GCNNNNNNNGC	5 cut(s)	497, 651, 1028, 1188, 1301
HpyF3I	CTNAG	2 cut(s)	12, 225
HpySE526I	ACGT	2 cut(s)	930, 1137
Hsp92I	GRCGYC	1 cut(s)	1102
Hsp92II	CATG	5 cut(s)	181, 305, 379, 658, 757
HspAI	GCGC	1 cut(s)	907
Ksp22I	TGATCA	1 cut(s)	1014
Kzo9I	GATC	1 cut(s)	1014
LmnI	GCTCC	2 cut(s)	433, 1235
Lsp1109I	GCAGC	9 cut(s)	318, 337, 870, 987, 1043, 1194, 1225, 1274, 1291
LweI	GCATC	2 cut(s)	543, 1282
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	2 cut(s)	722, 1131
MaeII	ACGT	2 cut(s)	930, 1137
MaeIII	GTNAC	4 cut(s)	657, 808, 1043, 1052
MalI	GATC	1 cut(s)	1016
MboI	GATC	1 cut(s)	1014
MboII	GAAGA	3 cut(s)	833, 1301, 1322
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	6 cut(s)	165, 384, 864, 874, 969, 1272
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	236, 678
MmeI	TCCRAC	3 cut(s)	499, 509, 893
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	164, 383
MslI	CAYNNNNRTG	1 cut(s)	127
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	883
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	281, 677, 1218
MvaI	CCWGG	2 cut(s)	281, 1218
MwoI	GCNNNNNNNGC	5 cut(s)	497, 651, 1028, 1188, 1301
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	1 cut(s)	1014
NlaIII	CATG	5 cut(s)	181, 305, 379, 658, 757
NlaIV	GGNNCC	6 cut(s)	6, 134, 285, 435, 513, 832
NmuCI	GTSAC	1 cut(s)	1043
NsbI	TGCGCA	1 cut(s)	908
NspI	RCATGY	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	1 cut(s)	1096
PfeI	GAWTC	5 cut(s)	266, 560, 726, 1115, 1328
PflMI	CCANNNNNTGG	1 cut(s)	827
PleI	GAGTC	2 cut(s)	235, 678
PpsI	GAGTC	2 cut(s)	235, 678
PsiI	TTATAA	1 cut(s)	1342
Psp6I	CCWGG	2 cut(s)	279, 1216
PspFI	CCCAGC	1 cut(s)	879
PspGI	CCWGG	2 cut(s)	279, 1216
PspN4I	GGNNCC	6 cut(s)	6, 134, 285, 435, 513, 832
PspPI	GGNCC	1 cut(s)	936
PspXI	VCTCGAGB	1 cut(s)	764
PstI	CTGCAG	2 cut(s)	1243, 1264
PstNI	CAGNNNCTG	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	883
RsaI	GTAC	2 cut(s)	711, 854
RsaNI	GTAC	2 cut(s)	710, 853
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	164, 383
Sau3AI	GATC	1 cut(s)	1014
Sau96I	GGNCC	1 cut(s)	936
SchI	GAGTC	2 cut(s)	236, 678
ScrFI	CCNGG	3 cut(s)	281, 677, 1218
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	543, 1282
SfcI	CTRYAG	2 cut(s)	1239, 1260
Sfr274I	CTCGAG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	936
SlaI	CTCGAG	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	320, 764
SmoI	CTYRAG	2 cut(s)	320, 764
Sse9I	AATT	6 cut(s)	165, 384, 864, 874, 969, 1272
SsiI	CCGC	2 cut(s)	270, 1029
SspMI	CTAG	2 cut(s)	722, 1131
StyD4I	CCNGG	3 cut(s)	279, 675, 1216
StyI	CCWWGG	1 cut(s)	887
TaaI	ACNGT	3 cut(s)	98, 262, 714
TaiI	ACGT	2 cut(s)	933, 1140
TaqI	TCGA	3 cut(s)	243, 765, 1084
TasI	AATT	6 cut(s)	165, 384, 864, 874, 969, 1272
TauI	GCSGC	1 cut(s)	1031
TfiI	GAWTC	5 cut(s)	266, 560, 726, 1115, 1328
Tru1I	TTAA	2 cut(s)	164, 383
Tru9I	TTAA	2 cut(s)	164, 383
TscAI	CASTG	4 cut(s)	478, 621, 1048, 1338
TseFI	GTSAC	1 cut(s)	1043
TseI	GCWGC	9 cut(s)	306, 350, 883, 1000, 1031, 1182, 1238, 1262, 1304
Tsp45I	GTSAC	1 cut(s)	1043
TspDTI	ATGAA	2 cut(s)	87, 908
TspRI	CASTG	4 cut(s)	478, 621, 1048, 1338
Van91I	CCANNNNNTGG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	936
XapI	RAATTY	2 cut(s)	864, 874
XbaI	TCTAGA	1 cut(s)	1130
XceI	RCATGY	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	764
XspI	CTAG	2 cut(s)	722, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.