AT5G16810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011029
Physical Location & Seq
Reverse (-)
5526689 .. 5529978
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16810.2

Sequence Viewer

Length: 1257 bp
ATGAATCTGGTCGCTATTCATCGCGTTTCCTTCGAATGCGTTTCGCGTTTCTCTTTGAAACATAGAGAATCAGGCGATGGATTCTCCGGCTGTCGGATTGTAAATTCGCGTGGACGGAATCGGCCGATTCGGCGGTTGCATGCGGTGACAGCGAGTTTGATAACCAGTGCTGACTCGTTCGAGGTAGGGCGGCTTATCGGAAGCTACGGATTCATGAATGTAACTAGTTATACAGGGCTGCAGTCAGGATCTGACTTTGAATATACGTCTGATGATATTGGGCGATTAAAATCTCAAGATATTGGAGAAGGTGCCGTTAAGATCAGACTATATCAAGGACGAATATCTCAGGGTCCATTTCGAGGAACGCCTGTCGTCTTTAAGGTCTACCCCGGACAGCGTGCTGGTGGAGTTGAGGCTGACATGATGGCAGCAAACGAGCTTAATGCACACTCTTTTCTCCAGAGCAAAAGCCTGCCTGCTAATCTGCTTCTACTTGTTGGTGGCTTTGAGACACAACTTGGGGAACAGTGGCTGGCTTTTCGTGATGGTGGGAAAGATAGTGCAGCTGACTACGCGCAAACTGCGAGTGAAAAAACAACCAGAGCTCGCTCCCAAGGAGTATGGAATCCTTATGAAAAAGAGCAGATGATAAAACGAAGGAGAAACTTTGTTATTAAGATCCTTCAGGGTGCAATGAAGGGTCTAGCCTTTATGCATGATAATGACAGGTTACATCAAAGCCTCGGGCCATCCTCAATTGTTCTCAATACACCAGCGGAACGAGAAGCCATCTATTTAATACCGAGGCTGCGAGATCTAGCCTTTTCTGTTGACATAAGGCCTTCATGCTTGGAAGAAGGAGCCACTTCTGGTTCACTGTCAGAGCAACTTTGGCGAAGGGCAAATGCTGCTGGTGCTTACACAGTTTTTGAGAAAAGAGCTTTTGGGATTGCAGATGACATATATGAAGCCGGTCTTCTTTTTGCATACTTAGCATTTGTTCCATTCTGTGAAGCAGGCGTAACGGATTCTCTTTCTCTTCAGAGGCTACTGGAAAACACTTTCCGGCTGGATATCGAGGCTGTAAGAGAGTACTGTTTAGCTGATGAACGCCTCGAAGAAGCGGTAAAGTTTCTGGATCTTGGTGATAGAGCTGGTTGGGAATTGCTCCAGGCAATGTTGAACGCTGACTATAGGAAGCGGCCAATGGCGGAAGCTGTTCTTAGTCATCGATTTTTGAATGGCGTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

418

Amino Acids

46.5

Weight (kDa)

7.66

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 387
AccII CGCG 4 cut(s) 24, 46, 109, 578
AciI CCGC 7 cut(s) 133, 143, 190, 779, 1127, 1204, 1214
AclWI GGATC 3 cut(s) 256, 676, 1149
AcoI YGGCCR 2 cut(s) 122, 1205
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 671, 1028
AfaI GTAC 1 cut(s) 1097
AfiI CCNNNNNNNGG 2 cut(s) 93, 362
AgsI TTSAA 4 cut(s) 58, 260, 1186, 1243
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 1173
AluBI AGCT 8 cut(s) 204, 442, 569, 608, 944, 1106, 1157, 1220
AluI AGCT 8 cut(s) 204, 442, 569, 608, 944, 1106, 1157, 1220
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 3 cut(s) 256, 676, 1149
AlwNI CAGNNNCTG 2 cut(s) 251, 535
Ama87I CYCGRG 1 cut(s) 746
AoxI GGCC 4 cut(s) 122, 749, 842, 1205
ApeKI GCWGC 5 cut(s) 238, 431, 566, 811, 911
ApoI RAATTY 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp700I GAANNNNTTC 1 cut(s) 1221
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 353, 749
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 157, 1160
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 971
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 5 cut(s) 225, 443, 578, 798, 898
BccI CCATC 5 cut(s) 71, 421, 542, 760, 800
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 1 cut(s) 1175
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 506
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 225, 707, 821
BfmI CTRYAG 2 cut(s) 239, 1195
BglI GCCNNNNNGGC 1 cut(s) 130
BglII AGATCT 1 cut(s) 817
BisI GCNGC 7 cut(s) 191, 239, 432, 567, 812, 912, 1205
BlsI GCNGC 7 cut(s) 192, 240, 433, 568, 813, 913, 1206
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 2 cut(s) 393, 1175
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 353, 749
BmiI GGNNCC 3 cut(s) 313, 354, 865
BmrFI CCNGG 2 cut(s) 393, 1175
BpiI GAAGAC 1 cut(s) 971
BpmI CTGGAG 2 cut(s) 446, 1157
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 1234
BsaBI GATNNNNATC 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 391, 616, 745, 806
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 362
Bse118I RCCGGY 1 cut(s) 974
Bse1I ACTGG 2 cut(s) 165, 1059
Bse3DI GCAATG 2 cut(s) 702, 1185
Bse8I GATNNNNATC 1 cut(s) 289
BseBI CCWGG 1 cut(s) 1175
BseCI ATCGAT 1 cut(s) 1234
BseDI CCNNGG 4 cut(s) 391, 616, 745, 806
BseGI GGATG 1 cut(s) 752
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 93, 362
BseMI GCAATG 2 cut(s) 702, 1185
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 165, 1059
BseX3I CGGCCG 1 cut(s) 122
BseXI GCAGC 5 cut(s) 225, 443, 578, 798, 898
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 4 cut(s) 24, 46, 109, 578
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 4 cut(s) 124, 751, 844, 1207
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 1234
BsiEI CGRYCG 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 4 cut(s) 87, 393, 975, 1069
BslI CCNNNNNNNGG 2 cut(s) 93, 362
BsmAI GTCTC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 4 cut(s) 124, 751, 844, 1207
BsoBI CYCGRG 1 cut(s) 746
Bsp119I TTCGAA 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 5 cut(s) 248, 321, 681, 817, 1141
BspACI CCGC 7 cut(s) 133, 143, 190, 779, 1127, 1204, 1214
BspANI GGCC 4 cut(s) 124, 751, 844, 1207
BspCNI CTCAG 1 cut(s) 361
BspDI ATCGAT 1 cut(s) 1234
BspFNI CGCG 4 cut(s) 24, 46, 109, 578
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 313, 354, 865
BspMAI CTGCAG 1 cut(s) 243
BspPI GGATC 3 cut(s) 256, 676, 1149
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 702, 1185
BsrFI RCCGGY 1 cut(s) 974
BsrI ACTGG 2 cut(s) 165, 1059
BssAI RCCGGY 1 cut(s) 974
BssECI CCNNGG 4 cut(s) 391, 616, 745, 806
BssMI GATC 5 cut(s) 248, 321, 681, 817, 1141
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 1175
Bst4CI ACNGT 4 cut(s) 531, 882, 928, 1100
Bst6I CTCTTC 1 cut(s) 1047
BstAPI GCANNNNNTGC 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 7 cut(s) 141, 402, 476, 480, 537, 610, 1021
BstDEI CTNAG 3 cut(s) 348, 994, 1226
BstF5I GGATG 1 cut(s) 752
BstFNI CGCG 4 cut(s) 24, 46, 109, 578
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 5 cut(s) 251, 324, 684, 820, 1144
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 5 cut(s) 248, 321, 681, 817, 1141
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 8 cut(s) 130, 149, 575, 584, 895, 911, 917, 995
BstNI CCWGG 1 cut(s) 1175
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 391, 1173
BstSFI CTRYAG 2 cut(s) 239, 1195
BstUI CGCG 4 cut(s) 24, 46, 109, 578
BstV1I GCAGC 5 cut(s) 225, 443, 578, 798, 898
BstV2I GAAGAC 1 cut(s) 971
BstX2I RGATCY 4 cut(s) 248, 681, 817, 1141
BstYI RGATCY 4 cut(s) 248, 681, 817, 1141
BstZI CGGCCG 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 1234
BsuRI GGCC 4 cut(s) 124, 751, 844, 1207
BsuTUI ATCGAT 1 cut(s) 1234
BtgZI GCGATG 2 cut(s) 5, 90
BtsCI GGATG 1 cut(s) 752
BtsIMutI CAGTG 3 cut(s) 172, 536, 878
Cac8I GCNNGC 7 cut(s) 141, 402, 476, 480, 537, 610, 1021
CaiI CAGNNNCTG 2 cut(s) 251, 535
CciI TCATGA 1 cut(s) 213
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 974
Cfr13I GGNCC 2 cut(s) 353, 749
ClaI ATCGAT 1 cut(s) 1234
Csp6I GTAC 1 cut(s) 1096
CviAII CATG 5 cut(s) 140, 214, 424, 719, 849
CviQI GTAC 1 cut(s) 1096
DdeI CTNAG 3 cut(s) 348, 994, 1226
DpnI GATC 5 cut(s) 250, 323, 683, 819, 1143
DpnII GATC 5 cut(s) 248, 321, 681, 817, 1141
EaeI YGGCCR 2 cut(s) 122, 1205
EagI CGGCCG 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 1047
EarI CTCTTC 1 cut(s) 1047
EciI GGCGGA 1 cut(s) 1229
Ecl136II GAGCTC 1 cut(s) 608
EclXI CGGCCG 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 1078
Eco47I GGWCC 1 cut(s) 353
Eco52I CGGCCG 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 608
Eco57I CTGAAG 2 cut(s) 671, 1028
Eco88I CYCGRG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 1173
EcoRV GATATC 1 cut(s) 1078
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 5 cut(s) 143, 217, 427, 722, 852
FalI AAGNNNNNCTT 4 cut(s) 963, 995, 1209, 1241
FatI CATG 5 cut(s) 139, 213, 423, 718, 848
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 7 cut(s) 191, 239, 432, 567, 812, 912, 1205
FokI GGATG 1 cut(s) 739
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 7 cut(s) 191, 239, 432, 567, 812, 912, 1205
FspBI CTAG 3 cut(s) 225, 707, 821
GlaI GCGC 1 cut(s) 579
GluI GCNGC 7 cut(s) 191, 239, 432, 567, 812, 912, 1205
GsuI CTGGAG 2 cut(s) 446, 1157
HaeIII GGCC 4 cut(s) 124, 751, 844, 1207
HapII CCGG 4 cut(s) 87, 393, 975, 1069
HhaI GCGC 1 cut(s) 580
Hin1II CATG 5 cut(s) 143, 217, 427, 722, 852
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 9 cut(s) 4, 68, 81, 118, 127, 173, 210, 628, 1031
HpaII CCGG 4 cut(s) 87, 393, 975, 1069
HphI GGTGA 2 cut(s) 157, 1160
Hpy166II GTNNAC 4 cut(s) 113, 388, 835, 878
Hpy188I TCNGA 7 cut(s) 96, 200, 253, 271, 326, 886, 1047
Hpy188III TCNNGA 6 cut(s) 214, 246, 296, 463, 545, 1139
Hpy8I GTNNAC 4 cut(s) 113, 388, 835, 878
HpyAV CCTTC 8 cut(s) 40, 302, 654, 694, 695, 854, 855, 894
HpyCH4III ACNGT 4 cut(s) 531, 882, 928, 1100
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 8 cut(s) 139, 241, 449, 566, 695, 718, 956, 989
HpyF10VI GCNNNNNNNGC 8 cut(s) 130, 149, 575, 584, 895, 911, 917, 995
HpyF3I CTNAG 3 cut(s) 348, 994, 1226
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 5 cut(s) 143, 217, 427, 722, 852
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 5 cut(s) 248, 321, 681, 817, 1141
LmnI GCTCC 3 cut(s) 617, 863, 1176
Lsp1109I GCAGC 5 cut(s) 225, 443, 578, 798, 898
MaeI CTAG 3 cut(s) 225, 707, 821
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 4 cut(s) 145, 220, 732, 1024
MalI GATC 5 cut(s) 250, 323, 683, 819, 1143
MboI GATC 5 cut(s) 248, 321, 681, 817, 1141
MboII GAAGA 4 cut(s) 869, 971, 1034, 1133
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 4 cut(s) 248, 681, 817, 1141
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 3 cut(s) 103, 759, 1166
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 9 cut(s) 175, 356, 409, 755, 766, 801, 1041, 1075, 1127
Mph1103I ATGCAT 1 cut(s) 720
MroXI GAANNNNTTC 1 cut(s) 1221
MseI TTAA 7 cut(s) 287, 318, 381, 444, 678, 800, 1255
MslI CAYNNNNRTG 1 cut(s) 723
MspA1I CMGCKG 2 cut(s) 569, 779
MspI CCGG 4 cut(s) 87, 393, 975, 1069
MspR9I CCNGG 2 cut(s) 393, 1175
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 1175
MvnI CGCG 4 cut(s) 24, 46, 109, 578
MwoI GCNNNNNNNGC 8 cut(s) 130, 149, 575, 584, 895, 911, 917, 995
NciI CCSGG 1 cut(s) 393
NdeII GATC 5 cut(s) 248, 321, 681, 817, 1141
NlaIII CATG 5 cut(s) 143, 217, 427, 722, 852
NlaIV GGNNCC 3 cut(s) 313, 354, 865
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 720
NspI RCATGY 1 cut(s) 143
NspV TTCGAA 1 cut(s) 33
PaeI GCATGC 1 cut(s) 143
PagI TCATGA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 844
PctI GAATGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 8 cut(s) 4, 68, 81, 118, 127, 210, 628, 1031
PkrI GCNGC 7 cut(s) 192, 240, 433, 568, 813, 913, 1206
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 1173
PspGI CCWGG 1 cut(s) 1173
PspN4I GGNNCC 3 cut(s) 313, 354, 865
PspPI GGNCC 2 cut(s) 353, 749
PstI CTGCAG 1 cut(s) 243
PstNI CAGNNNCTG 2 cut(s) 251, 535
PsuI RGATCY 4 cut(s) 248, 681, 817, 1141
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 1 cut(s) 1097
RsaNI GTAC 1 cut(s) 1096
RseI CAYNNNNRTG 1 cut(s) 723
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 7 cut(s) 287, 318, 381, 444, 678, 800, 1255
SatI GCNGC 7 cut(s) 191, 239, 432, 567, 812, 912, 1205
Sau3AI GATC 5 cut(s) 248, 321, 681, 817, 1141
Sau96I GGNCC 2 cut(s) 353, 749
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 393, 1175
SduI GDGCHC 1 cut(s) 610
SfcI CTRYAG 2 cut(s) 239, 1195
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 224
SphI GCATGC 1 cut(s) 143
Sse9I AATT 3 cut(s) 103, 759, 1166
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 7 cut(s) 133, 143, 190, 779, 1127, 1204, 1214
SspMI CTAG 3 cut(s) 225, 707, 821
SstI GAGCTC 1 cut(s) 610
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 2 cut(s) 391, 1173
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 4 cut(s) 531, 882, 928, 1100
TaiI ACGT 1 cut(s) 269
TaqI TCGA 6 cut(s) 33, 180, 361, 1080, 1119, 1234
TasI AATT 3 cut(s) 103, 759, 1166
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 2 cut(s) 193, 1207
TfiI GAWTC 8 cut(s) 4, 68, 81, 118, 127, 210, 628, 1031
Tru1I TTAA 7 cut(s) 287, 318, 381, 444, 678, 800, 1255
Tru9I TTAA 7 cut(s) 287, 318, 381, 444, 678, 800, 1255
TscAI CASTG 3 cut(s) 172, 536, 885
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 5 cut(s) 238, 431, 566, 811, 911
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 9 cut(s) 8, 17, 202, 230, 651, 713, 837, 984, 1125
TspGWI ACGGA 3 cut(s) 130, 222, 1043
TspRI CASTG 3 cut(s) 172, 536, 885
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 3 cut(s) 225, 707, 821
ZrmI AGTACT 1 cut(s) 1097
Zsp2I ATGCAT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.