RLG00000010010

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61720632 .. 61726012
5381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010010

Sequence Viewer

Length: 1281 bp
ATGCTGCTCGCGCCACCACCTGATTGGCTCCTTCCGGCTCGTCGAATTTACAGACCCAACTCACCACCACCGATCAGAACTCGGACTCGGACGACTCGGCTGTGCTGTAGAGCGAGTCTGATCACCAACTCGGACTCGTTCGAGGTGGGTCGACTCATTGGCAGCTATGGCTTCATGAACATCACTAGTAGAAAGATATGTTATATTCCCTCCTCATCCGGAGATTTGGGGTGGTTGAGGGTTCAAGATGTAGGAGAAGGCAGTGTAAAGATCAGGCTATATGATGGGAGAGTTACTCAAGGTCCGCTGAAAGGGGCTCCAGTTGTTTTTAAGGTTTATCCTGGAAAAAGGGCCGATGGAAATGAGGCTGATATGATGGCTGCTAATGAGCTAAATGCTCACACATCCCTTCAGGACAGTTCAGATGGTATCTGCCAGAATCTTGTGACACTCATAGGTGGGTTTGAACAAAAACTGGGGAGCAGGTTTTGTGCAGATTATGGAAAAGTTATGAGTGAAAGAGTTTCAAAAAGCCGTGCTGGGGGAGGACAGGTTTGGAATAAGTTTGAACAAGAGGAAACAATCAAACGCAGAAGATACTATGTGACCAAGTTGCTTCAGGGTATGATGAGAGGTCTAGCATACATGCATGATCGTGAAAGGTTACACCAGAGTCTGGGACCAGCTTCTGTCATTCTTAACACAATTGTAGAGAGAGAGGCCATATACTTAGTACCACGACTCCGGGAGCTAGCCTTTTCTGTTGACATTAGGTATTCAAATCTAGAAGGGAGGCCTGGACTACTGTCGGAGGGACTTTGGAGACGAGCATCTACCGCTGGTGCCTTCACACCTATGGATAAAAGAGCATTTGGACTGGCAGATGACATATATGAAGCAGGTCTTTTCTTTGCATACTTGGCATTTGTTCCATTTTGTGAAGCAGGCACAATGGATGGTCTTTCGTTGCAAAGGATTTTGGAGAGCACTTTCCAACTTGATCTTCGAGCAACAAGAGAATACTGTTTAGCAGATGACAGGCTTTTAGATGCTGTGAAATTTCTGGATCTTGGAGATGGTGCTGGTTGGGAGTTACTCCAGGCAATGCTGAATCCCGACTTCCCGGAAACGGCCGATGGCACAGACTGTACTCAATCATCGATTCATGACCGTGAGTGTTCTTTGAGATTTTGGACCGCAGAATTTGATCTATTGTGTATGTTGTATGATAGACATGGATCATCAAGTGAACTATGTTTGGGTGATATTTCTTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

47.7

Weight (kDa)

6.28

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 474, 890
AccB1I GGYRCC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 676
AccI GTMKAC 1 cut(s) 151
AccII CGCG 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 3 cut(s) 305, 837, 1197
AclWI GGATC 2 cut(s) 1074, 1246
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 3 cut(s) 45, 1058, 1202
AcuI CTGAAG 2 cut(s) 395, 602
AfaI GTAC 2 cut(s) 735, 1150
AfiI CCNNNNNNNGG 4 cut(s) 311, 541, 676, 1129
AgsI TTSAA 5 cut(s) 245, 467, 528, 569, 780
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 3 cut(s) 340, 796, 1098
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
AluBI AGCT 4 cut(s) 165, 391, 686, 751
AluI AGCT 4 cut(s) 165, 391, 686, 751
Alw21I GWGCWC 1 cut(s) 989
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 2 cut(s) 1074, 1246
AlwNI CAGNNNCTG 2 cut(s) 676, 689
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 4 cut(s) 351, 720, 794, 1131
ApeKI GCWGC 3 cut(s) 4, 162, 380
ApoI RAATTY 3 cut(s) 45, 1058, 1202
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 4 cut(s) 302, 351, 680, 1194
AsuC2I CCSGG 2 cut(s) 746, 1124
AsuHPI GGTGA 3 cut(s) 54, 115, 1274
AsuNHI GCTAGC 1 cut(s) 751
AvaII GGWCC 3 cut(s) 302, 680, 1194
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 989
BbvI GCAGC 2 cut(s) 174, 367
BccI CCATC 7 cut(s) 278, 350, 370, 419, 950, 1070, 1130
BceAI ACGGC 2 cut(s) 519, 1146
BciT130I CCWGG 3 cut(s) 342, 798, 1100
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 2 cut(s) 746, 1124
BcoDI GTCTC 1 cut(s) 817
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 4 cut(s) 186, 638, 752, 785
BfmI CTRYAG 1 cut(s) 106
BfuAI ACCTGC 2 cut(s) 474, 890
BisI GCNGC 3 cut(s) 5, 163, 381
BlsI GCNGC 3 cut(s) 6, 164, 382
Bme1390I CCNGG 5 cut(s) 342, 746, 798, 1100, 1124
Bme18I GGWCC 3 cut(s) 302, 680, 1194
BmgT120I GGNCC 4 cut(s) 302, 351, 680, 1194
BmiI GGNNCC 4 cut(s) 29, 318, 681, 844
BmrFI CCNGG 5 cut(s) 342, 746, 798, 1100, 1124
BmrI ACTGGG 1 cut(s) 485
BmsI GCATC 2 cut(s) 839, 1039
BmtI GCTAGC 1 cut(s) 755
BmuI ACTGGG 1 cut(s) 485
BoxI GACNNNNGTC 1 cut(s) 805
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 2 cut(s) 303, 1082
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 746, 1124
Bsa29I ATCGAT 1 cut(s) 1160
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 4 cut(s) 537, 567, 726, 756
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 541, 676, 1129
Bse1I ACTGG 3 cut(s) 320, 480, 882
Bse3DI GCAATG 1 cut(s) 1110
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 3 cut(s) 342, 798, 1100
BseCI ATCGAT 1 cut(s) 1160
BseGI GGATG 3 cut(s) 215, 404, 961
BseLI CCNNNNNNNGG 4 cut(s) 311, 541, 676, 1129
BseMI GCAATG 1 cut(s) 1110
BseNI ACTGG 3 cut(s) 320, 480, 882
BseRI GAGGAG 1 cut(s) 202
BseX3I CGGCCG 1 cut(s) 1131
BseXI GCAGC 2 cut(s) 174, 367
BseYI CCCAGC 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 1134
BshFI GGCC 4 cut(s) 353, 722, 796, 1133
BshNI GGYRCC 1 cut(s) 842
BshVI ATCGAT 1 cut(s) 1160
BsiEI CGRYCG 1 cut(s) 1134
BsiHKAI GWGCWC 1 cut(s) 989
BsiSI CCGG 4 cut(s) 35, 219, 745, 1124
BslFI GGGAC 2 cut(s) 693, 828
BslI CCNNNNNNNGG 4 cut(s) 311, 541, 676, 1129
BsmAI GTCTC 1 cut(s) 817
BsmBI CGTCTC 1 cut(s) 817
BsmFI GGGAC 2 cut(s) 693, 828
BsnI GGCC 4 cut(s) 353, 722, 796, 1133
Bsp1286I GDGCHC 2 cut(s) 319, 989
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
BspACI CCGC 3 cut(s) 305, 837, 1197
BspANI GGCC 4 cut(s) 353, 722, 796, 1133
BspDI ATCGAT 1 cut(s) 1160
BspEI TCCGGA 1 cut(s) 218
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 2 cut(s) 174, 1165
BspLI GGNNCC 4 cut(s) 29, 318, 681, 844
BspMI ACCTGC 2 cut(s) 474, 890
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 1074, 1246
BspT107I GGYRCC 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 1110
BsrI ACTGG 3 cut(s) 320, 480, 882
BssMI GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
Bst2UI CCWGG 3 cut(s) 342, 798, 1100
Bst4CI ACNGT 5 cut(s) 419, 807, 1025, 1148, 1172
BstC8I GCNNGC 3 cut(s) 9, 753, 946
BstDEI CTNAG 1 cut(s) 730
BstF5I GGATG 3 cut(s) 215, 404, 961
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 8 cut(s) 75, 123, 273, 655, 1003, 1069, 1210, 1241
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
BstMCI CGRYCG 1 cut(s) 1134
BstMWI GCNNNNNNNGC 4 cut(s) 10, 168, 836, 920
BstNI CCWGG 3 cut(s) 342, 798, 1100
BstNSI RCATGY 1 cut(s) 649
BstPAI GACNNNNGTC 1 cut(s) 805
BstSCI CCNGG 5 cut(s) 340, 744, 796, 1098, 1122
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 174, 367
BstX2I RGATCY 1 cut(s) 1066
BstXI CCANNNNNNTGG 1 cut(s) 24
BstYI RGATCY 1 cut(s) 1066
BstZI CGGCCG 1 cut(s) 1131
Bsu15I ATCGAT 1 cut(s) 1160
BsuRI GGCC 4 cut(s) 353, 722, 796, 1133
BsuTUI ATCGAT 1 cut(s) 1160
BtsCI GGATG 3 cut(s) 215, 404, 961
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
BveI ACCTGC 2 cut(s) 474, 890
Cac8I GCNNGC 3 cut(s) 9, 753, 946
CaiI CAGNNNCTG 2 cut(s) 676, 689
CciI TCATGA 2 cut(s) 174, 1165
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 4 cut(s) 302, 351, 680, 1194
ClaI ATCGAT 1 cut(s) 1160
Csp6I GTAC 2 cut(s) 734, 1149
CviAII CATG 5 cut(s) 175, 646, 650, 1166, 1235
CviQI GTAC 2 cut(s) 734, 1149
DdeI CTNAG 1 cut(s) 730
DpnI GATC 8 cut(s) 74, 122, 272, 654, 1002, 1068, 1209, 1240
DpnII GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
EaeI YGGCCR 1 cut(s) 1131
EagI CGGCCG 1 cut(s) 1131
EclXI CGGCCG 1 cut(s) 1131
Eco147I AGGCCT 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 319
Eco47I GGWCC 3 cut(s) 302, 680, 1194
Eco52I CGGCCG 1 cut(s) 1131
Eco57I CTGAAG 2 cut(s) 395, 602
EcoRII CCWGG 3 cut(s) 340, 796, 1098
EcoT22I ATGCAT 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 817
FaeI CATG 5 cut(s) 178, 649, 653, 1169, 1238
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FaqI GGGAC 2 cut(s) 693, 828
FatI CATG 5 cut(s) 174, 645, 649, 1165, 1234
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 5, 163, 381
FokI GGATG 3 cut(s) 202, 391, 968
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 5, 163, 381
FspBI CTAG 4 cut(s) 186, 638, 752, 785
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 5, 163, 381
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 2 cut(s) 303, 1082
HaeIII GGCC 4 cut(s) 353, 722, 796, 1133
HapII CCGG 4 cut(s) 35, 219, 745, 1124
HhaI GCGC 1 cut(s) 13
Hin1II CATG 5 cut(s) 178, 649, 653, 1169, 1238
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 2 cut(s) 152, 766
HindII GTYRAC 2 cut(s) 152, 766
HpaII CCGG 4 cut(s) 35, 219, 745, 1124
HphI GGTGA 3 cut(s) 54, 115, 1274
Hpy166II GTNNAC 3 cut(s) 152, 766, 1250
Hpy188I TCNGA 7 cut(s) 77, 84, 90, 120, 133, 424, 811
Hpy188III TCNNGA 9 cut(s) 175, 219, 245, 413, 656, 785, 1064, 1115, 1166
Hpy8I GTNNAC 3 cut(s) 152, 766, 1250
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 5 cut(s) 41, 251, 419, 782, 856
HpyCH4III ACNGT 5 cut(s) 419, 807, 1025, 1148, 1172
HpyCH4V TGCA 5 cut(s) 494, 649, 914, 970, 1276
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 168, 836, 920
HpyF3I CTNAG 1 cut(s) 730
Hsp92II CATG 5 cut(s) 178, 649, 653, 1169, 1238
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
LmnI GCTCC 4 cut(s) 33, 322, 480, 748
Lsp1109I GCAGC 2 cut(s) 174, 367
LweI GCATC 2 cut(s) 839, 1039
MaeI CTAG 4 cut(s) 186, 638, 752, 785
MaeIII GTNAC 5 cut(s) 292, 445, 604, 663, 1092
MalI GATC 8 cut(s) 74, 122, 272, 654, 1002, 1068, 1209, 1240
MboI GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
MboII GAAGA 2 cut(s) 606, 995
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 1 cut(s) 1066
MhlI GDGCHC 2 cut(s) 319, 989
MluCI AATT 4 cut(s) 45, 705, 1058, 1202
MlyI GAGTC 7 cut(s) 79, 88, 124, 128, 147, 682, 735
MmeI TCCRAC 2 cut(s) 789, 1018
Mph1103I ATGCAT 1 cut(s) 651
MroI TCCGGA 1 cut(s) 218
MseI TTAA 2 cut(s) 330, 699
MslI CAYNNNNRTG 3 cut(s) 654, 854, 1170
MspA1I CMGCKG 2 cut(s) 307, 839
MspI CCGG 4 cut(s) 35, 219, 745, 1124
MspR9I CCNGG 5 cut(s) 342, 746, 798, 1100, 1124
MunI CAATTG 1 cut(s) 705
MvaI CCWGG 3 cut(s) 342, 798, 1100
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 10, 168, 836, 920
NciI CCSGG 2 cut(s) 746, 1124
NdeII GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 5 cut(s) 178, 649, 653, 1169, 1238
NlaIV GGNNCC 4 cut(s) 29, 318, 681, 844
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 445, 604
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 1 cut(s) 649
PagI TCATGA 2 cut(s) 174, 1165
PceI AGGCCT 1 cut(s) 796
PfeI GAWTC 3 cut(s) 439, 1111, 1162
PflMI CCANNNNNTGG 1 cut(s) 676
PfoI TCCNGGA 3 cut(s) 340, 744, 1122
PkrI GCNGC 3 cut(s) 6, 164, 382
PleI GAGTC 7 cut(s) 79, 88, 123, 128, 147, 681, 735
PpsI GAGTC 7 cut(s) 79, 88, 123, 128, 147, 681, 735
PshAI GACNNNNGTC 1 cut(s) 805
Psp6I CCWGG 3 cut(s) 340, 796, 1098
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 3 cut(s) 340, 796, 1098
PspN4I GGNNCC 4 cut(s) 29, 318, 681, 844
PspPI GGNCC 4 cut(s) 302, 351, 680, 1194
PstNI CAGNNNCTG 2 cut(s) 676, 689
PsuI RGATCY 1 cut(s) 1066
RsaI GTAC 2 cut(s) 735, 1150
RsaNI GTAC 2 cut(s) 734, 1149
RseI CAYNNNNRTG 3 cut(s) 654, 854, 1170
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 330, 699
SatI GCNGC 3 cut(s) 5, 163, 381
Sau3AI GATC 8 cut(s) 72, 120, 270, 652, 1000, 1066, 1207, 1238
Sau96I GGNCC 4 cut(s) 302, 351, 680, 1194
SchI GAGTC 7 cut(s) 79, 88, 124, 128, 147, 682, 735
ScrFI CCNGG 5 cut(s) 342, 746, 798, 1100, 1124
SduI GDGCHC 2 cut(s) 319, 989
SfaNI GCATC 2 cut(s) 839, 1039
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 3 cut(s) 302, 680, 1194
SmiMI CAYNNNNRTG 3 cut(s) 654, 854, 1170
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 4 cut(s) 45, 705, 1058, 1202
SseBI AGGCCT 1 cut(s) 796
SsiI CCGC 3 cut(s) 305, 837, 1197
SspMI CTAG 4 cut(s) 186, 638, 752, 785
StuI AGGCCT 1 cut(s) 796
StyD4I CCNGG 5 cut(s) 340, 744, 796, 1098, 1122
TaaI ACNGT 5 cut(s) 419, 807, 1025, 1148, 1172
TaqI TCGA 5 cut(s) 43, 141, 151, 1006, 1160
TasI AATT 4 cut(s) 45, 705, 1058, 1202
TatI WGTACW 1 cut(s) 1148
TfiI GAWTC 3 cut(s) 439, 1111, 1162
Tru1I TTAA 2 cut(s) 330, 699
Tru9I TTAA 2 cut(s) 330, 699
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 445, 604
TseI GCWGC 3 cut(s) 4, 162, 380
Tsp45I GTSAC 2 cut(s) 445, 604
TspDTI ATGAA 4 cut(s) 163, 191, 909, 1154
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 676
VpaK11BI GGWCC 3 cut(s) 302, 680, 1194
XapI RAATTY 3 cut(s) 45, 1058, 1202
XbaI TCTAGA 1 cut(s) 784
XceI RCATGY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 4 cut(s) 186, 638, 752, 785
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.