Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011029

Physical Location & Seq

Genomic Coordinates Reverse (-)

61708885 .. 61714717

Gene Structure 5833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCTCCTCGCGCCACCACCTGATTGGCTCCTTCCGGCTCGTCGAATTTACAGACCCAACTCACCACCACCGATCAGAACTCGGACTCGGACGACTCGGCTGTGCTGTAGAGCGAGTCTGATCACCAACTCGGACTCGTTCGAGGTGGGTCGACTCATTGGCAGCTATGGCTTCATGAACATCACTAGCTTTTCGGGATCTCCAGGCACAGATAATGAATACTCATCTGGAGATTTGGGGCAGTTGAGGGTTCAAGATGTAGGAGAAGGCAGTGTAAAGATCAGGCTATATGATGGGAGAGTTACTCAGGGTCCACTGAAAGGGACTCCGGTTGTTTTTAAGGTTTATCCTGGCCAAAGGGCTGGTGGCATTGAGGCTGATATGATGGCTGCCAATGAGCTAAATGCTCACACATCCCTTCAGGACAGTTCAGATGGTATCTGCCAGAATCTTGTGACACTCATTGGTGGGTTTGAAACAAGAACTGGGGAGCAGTGGCTGGCTTTTCGCAATGACGGGAAATATAGTGCGGCAGATTATGCAAAAGTTATGAGTGAAAGAGTTTCAAAAAGCCGTGCTGGGGGAGGACAGGTTTGGAATAAGTTTGAACAAGAGGAAACAATCAAACGCAGAAGATACTTTGTTACCAAGTTGCTTCAGGGTACGATGAGAGGTCTAGCATACATGCATGATCGTGAAAGGTTACACCAGAGTCTGGGACCAGCTTCTGTTATTCTTAACACAATTGCAGAGAGAGAGGCCATATACTTAGTACCAAGACTTCGGGATCTAGCCTTTTCTGTTGACATTAGGTATTCAAATCTAGAAGGGAGGCCTGGACTACTGTCAGAGGGACTTTGGAGACGAGCATCTACTGCTGGTGCCTTCACACCTATGGATAAAAGAGCATTTGGACTAGCAGATGACATATATGCAGCAGGTCTTTTCTTTGCATATTTGGCATTTGTTCCATTTTGTGAAGCAGGCACAATGGATGGTCTTTCGTTGCAAAGGCTTTTGGAGAGCACTTTCCAACTTGATATTGGAGCAACAAGAGAATACTGTTTAGCAGATGACGGGCTATTAGATGCTGTGAAATTCCTGGATCTTGGAGATGGTGCTGGTTGGGAGTTACTCCAGGCAATGCTGAATCCTGACTTCCGGAAACGGCCGATGGCACAGACTGTACTCAATCATCGATTCATGACGGTGGGTGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

408

Amino Acids

45.12

Weight (kDa)

8.51

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16810 AT5G16810
fragaria_vesca	FvH4_4g01950
malus_domestica	MD13G1202900.v1.1
prunus_persica	Prupe.1G025200_v2.0.a1 Prupe.1G025200_v2.0.a1 Prupe.1G025200_v2.0.a1
pyrus_communis	pycom13g17620
rosa_chinensis	RchiOBHm_Chr4g0388921
rosa_laevigata	RLG00000010007 RLG00000010010
rosa_multiflora	Rmu_sc0000697.1_g000001 Rmu_sc0005486.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335230
rosa_rugosa	Rorug03G0321200
rosa_samantha	Rh4AG025700 Rh4BG018900 Rh4CG028800 Rh4DG019400
rosa_wichuraiana	Rw4G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	929
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	1161
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	3 cut(s)	205, 795, 1113
AcoI	YGGCCR	2 cut(s)	352, 1169
AcsI	RAATTY	2 cut(s)	45, 1097
AcuI	CTGAAG	2 cut(s)	404, 641
AfaI	GTAC	3 cut(s)	664, 774, 1188
AfiI	CCNNNNNNNGG	3 cut(s)	320, 580, 715
AgsI	TTSAA	5 cut(s)	254, 476, 567, 608, 819
AjnI	CCWGG	5 cut(s)	202, 349, 835, 1101, 1137
AluBI	AGCT	4 cut(s)	165, 189, 400, 725
AluI	AGCT	4 cut(s)	165, 189, 400, 725
Alw21I	GWGCWC	1 cut(s)	1028
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	3 cut(s)	205, 795, 1113
AlwNI	CAGNNNCTG	3 cut(s)	499, 715, 728
Aor13HI	TCCGGA	1 cut(s)	1161
AoxI	GGCC	4 cut(s)	352, 759, 833, 1169
ApeKI	GCWGC	3 cut(s)	162, 389, 935
ApoI	RAATTY	2 cut(s)	45, 1097
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	311, 719
AsuHPI	GGTGA	2 cut(s)	54, 115
AvaII	GGWCC	2 cut(s)	311, 719
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	881
BarI	GAAGNNNNNNTAC	2 cut(s)	765, 797
Bbv12I	GWGCWC	1 cut(s)	1028
BbvI	GCAGC	3 cut(s)	174, 376, 947
BccI	CCATC	6 cut(s)	287, 379, 428, 989, 1109, 1168
BceAI	ACGGC	2 cut(s)	558, 1184
BciT130I	CCWGG	5 cut(s)	204, 351, 837, 1103, 1139
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	5 cut(s)	186, 677, 791, 824, 917
BfmI	CTRYAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	929
BisI	GCNGC	4 cut(s)	163, 390, 531, 936
BlsI	GCNGC	4 cut(s)	164, 391, 532, 937
Bme1390I	CCNGG	5 cut(s)	204, 351, 837, 1103, 1139
Bme18I	GGWCC	2 cut(s)	311, 719
BmgT120I	GGNCC	2 cut(s)	311, 719
BmiI	GGNNCC	4 cut(s)	29, 312, 720, 883
BmrFI	CCNGG	5 cut(s)	204, 351, 837, 1103, 1139
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	878, 1078
BmuI	ACTGGG	1 cut(s)	495
BoxI	GACNNNNGTC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	3 cut(s)	186, 249, 1121
Bsa29I	ATCGAT	1 cut(s)	1198
BsaWI	WCCGGW	2 cut(s)	328, 1161
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 580, 715
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	2 cut(s)	517, 1149
BseAI	TCCGGA	1 cut(s)	1161
BseBI	CCWGG	5 cut(s)	204, 351, 837, 1103, 1139
BseCI	ATCGAT	1 cut(s)	1198
BseGI	GGATG	2 cut(s)	413, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	320, 580, 715
BseMI	GCAATG	2 cut(s)	517, 1149
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	490
BseX3I	CGGCCG	1 cut(s)	1169
BseXI	GCAGC	3 cut(s)	174, 376, 947
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	1172
BshFI	GGCC	4 cut(s)	354, 761, 835, 1171
BshNI	GGYRCC	1 cut(s)	881
BshVI	ATCGAT	1 cut(s)	1198
BsiEI	CGRYCG	1 cut(s)	1172
BsiHKAI	GWGCWC	1 cut(s)	1028
BsiSI	CCGG	3 cut(s)	35, 329, 1162
BslFI	GGGAC	3 cut(s)	337, 732, 867
BslI	CCNNNNNNNGG	3 cut(s)	320, 580, 715
BsmAI	GTCTC	1 cut(s)	856
BsmBI	CGTCTC	1 cut(s)	856
BsmFI	GGGAC	3 cut(s)	337, 732, 867
BsnI	GGCC	4 cut(s)	354, 761, 835, 1171
Bsp1286I	GDGCHC	1 cut(s)	1028
Bsp13I	TCCGGA	1 cut(s)	1161
Bsp143I	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	4 cut(s)	354, 761, 835, 1171
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	1198
BspEI	TCCGGA	1 cut(s)	1161
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	2 cut(s)	174, 1203
BspLI	GGNNCC	4 cut(s)	29, 312, 720, 883
BspMI	ACCTGC	1 cut(s)	929
BspPI	GGATC	3 cut(s)	205, 795, 1113
BspT107I	GGYRCC	1 cut(s)	881
BsrDI	GCAATG	2 cut(s)	517, 1149
BsrI	ACTGG	1 cut(s)	490
BssMI	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
Bst2UI	CCWGG	5 cut(s)	204, 351, 837, 1103, 1139
Bst4CI	ACNGT	5 cut(s)	428, 846, 1064, 1186, 1210
BstAPI	GCANNNNNTGC	2 cut(s)	539, 875
BstC8I	GCNNGC	2 cut(s)	501, 985
BstDEI	CTNAG	2 cut(s)	306, 769
BstF5I	GGATG	2 cut(s)	413, 1000
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	7 cut(s)	75, 123, 200, 282, 694, 790, 1108
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
BstMCI	CGRYCG	1 cut(s)	1172
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 168, 539, 875, 959
BstNI	CCWGG	5 cut(s)	204, 351, 837, 1103, 1139
BstNSI	RCATGY	1 cut(s)	688
BstPAI	GACNNNNGTC	1 cut(s)	844
BstSCI	CCNGG	5 cut(s)	202, 349, 835, 1101, 1137
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	174, 376, 947
BstX2I	RGATCY	3 cut(s)	197, 787, 1105
BstXI	CCANNNNNNTGG	2 cut(s)	24, 362
BstYI	RGATCY	3 cut(s)	197, 787, 1105
BstZI	CGGCCG	1 cut(s)	1169
Bsu15I	ATCGAT	1 cut(s)	1198
BsuRI	GGCC	4 cut(s)	354, 761, 835, 1171
BsuTUI	ATCGAT	1 cut(s)	1198
BtsCI	GGATG	2 cut(s)	413, 1000
BtsI	GCAGTG	2 cut(s)	277, 500
BtsIMutI	CAGTG	3 cut(s)	277, 314, 500
BveI	ACCTGC	1 cut(s)	929
Cac8I	GCNNGC	2 cut(s)	501, 985
CaiI	CAGNNNCTG	3 cut(s)	499, 715, 728
CciI	TCATGA	2 cut(s)	174, 1203
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	311, 719
ClaI	ATCGAT	1 cut(s)	1198
Csp6I	GTAC	3 cut(s)	663, 773, 1187
CviAII	CATG	4 cut(s)	175, 685, 689, 1204
CviQI	GTAC	3 cut(s)	663, 773, 1187
DdeI	CTNAG	2 cut(s)	306, 769
DpnI	GATC	7 cut(s)	74, 122, 199, 281, 693, 789, 1107
DpnII	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
EaeI	YGGCCR	2 cut(s)	352, 1169
EagI	CGGCCG	1 cut(s)	1169
EclXI	CGGCCG	1 cut(s)	1169
Eco147I	AGGCCT	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	311, 719
Eco52I	CGGCCG	1 cut(s)	1169
Eco57I	CTGAAG	2 cut(s)	404, 641
EcoRII	CCWGG	5 cut(s)	202, 349, 835, 1101, 1137
EcoT22I	ATGCAT	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	856
FaeI	CATG	4 cut(s)	178, 688, 692, 1207
FaqI	GGGAC	3 cut(s)	337, 732, 867
FatI	CATG	4 cut(s)	174, 684, 688, 1203
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	163, 390, 531, 936
FokI	GGATG	2 cut(s)	400, 1007
Fsp4HI	GCNGC	4 cut(s)	163, 390, 531, 936
FspBI	CTAG	5 cut(s)	186, 677, 791, 824, 917
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	4 cut(s)	163, 390, 531, 936
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	3 cut(s)	186, 249, 1121
HaeIII	GGCC	4 cut(s)	354, 761, 835, 1171
HapII	CCGG	3 cut(s)	35, 329, 1162
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	178, 688, 692, 1207
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	2 cut(s)	152, 805
HindII	GTYRAC	2 cut(s)	152, 805
HpaII	CCGG	3 cut(s)	35, 329, 1162
HphI	GGTGA	2 cut(s)	54, 115
Hpy166II	GTNNAC	3 cut(s)	152, 314, 805
Hpy188I	TCNGA	7 cut(s)	77, 84, 90, 120, 133, 433, 850
Hpy8I	GTNNAC	3 cut(s)	152, 314, 805
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	5 cut(s)	41, 260, 428, 821, 895
HpyCH4III	ACNGT	5 cut(s)	428, 846, 1064, 1186, 1210
HpyCH4V	TGCA	6 cut(s)	542, 688, 749, 935, 953, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 168, 539, 875, 959
HpyF3I	CTNAG	2 cut(s)	306, 769
Hsp92II	CATG	4 cut(s)	178, 688, 692, 1207
HspAI	GCGC	1 cut(s)	11
Kpn2I	TCCGGA	1 cut(s)	1161
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
LmnI	GCTCC	4 cut(s)	9, 33, 490, 1046
Lsp1109I	GCAGC	3 cut(s)	174, 376, 947
LweI	GCATC	2 cut(s)	878, 1078
MaeI	CTAG	5 cut(s)	186, 677, 791, 824, 917
MaeIII	GTNAC	5 cut(s)	301, 454, 643, 702, 1131
MalI	GATC	7 cut(s)	74, 122, 199, 281, 693, 789, 1107
MboI	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
MboII	GAAGA	1 cut(s)	645
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	3 cut(s)	197, 787, 1105
MhlI	GDGCHC	1 cut(s)	1028
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	3 cut(s)	45, 744, 1097
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	7 cut(s)	79, 88, 124, 128, 147, 319, 721
MmeI	TCCRAC	1 cut(s)	1057
Mox20I	TGGCCA	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	690
MroI	TCCGGA	1 cut(s)	1161
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	339, 738
MslI	CAYNNNNRTG	3 cut(s)	693, 893, 1208
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	3 cut(s)	35, 329, 1162
MspR9I	CCNGG	5 cut(s)	204, 351, 837, 1103, 1139
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	5 cut(s)	204, 351, 837, 1103, 1139
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	5 cut(s)	10, 168, 539, 875, 959
NdeII	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
NlaIII	CATG	4 cut(s)	178, 688, 692, 1207
NlaIV	GGNNCC	4 cut(s)	29, 312, 720, 883
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	690
NspI	RCATGY	1 cut(s)	688
PagI	TCATGA	2 cut(s)	174, 1203
PceI	AGGCCT	1 cut(s)	835
PfeI	GAWTC	3 cut(s)	448, 1150, 1200
PflMI	CCANNNNNTGG	1 cut(s)	715
PfoI	TCCNGGA	1 cut(s)	1101
PkrI	GCNGC	4 cut(s)	164, 391, 532, 937
PleI	GAGTC	7 cut(s)	79, 88, 123, 128, 147, 319, 720
PpsI	GAGTC	7 cut(s)	79, 88, 123, 128, 147, 319, 720
PshAI	GACNNNNGTC	1 cut(s)	844
Psp6I	CCWGG	5 cut(s)	202, 349, 835, 1101, 1137
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	5 cut(s)	202, 349, 835, 1101, 1137
PspN4I	GGNNCC	4 cut(s)	29, 312, 720, 883
PspPI	GGNCC	2 cut(s)	311, 719
PstNI	CAGNNNCTG	3 cut(s)	499, 715, 728
PsuI	RGATCY	3 cut(s)	197, 787, 1105
RsaI	GTAC	3 cut(s)	664, 774, 1188
RsaNI	GTAC	3 cut(s)	663, 773, 1187
RseI	CAYNNNNRTG	3 cut(s)	693, 893, 1208
SalI	GTCGAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	339, 738
SatI	GCNGC	4 cut(s)	163, 390, 531, 936
Sau3AI	GATC	7 cut(s)	72, 120, 197, 279, 691, 787, 1105
Sau96I	GGNCC	2 cut(s)	311, 719
SchI	GAGTC	7 cut(s)	79, 88, 124, 128, 147, 319, 721
ScrFI	CCNGG	5 cut(s)	204, 351, 837, 1103, 1139
SduI	GDGCHC	1 cut(s)	1028
SfaNI	GCATC	2 cut(s)	878, 1078
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	311, 719
SmiMI	CAYNNNNRTG	3 cut(s)	693, 893, 1208
Sse9I	AATT	3 cut(s)	45, 744, 1097
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	5 cut(s)	186, 677, 791, 824, 917
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	5 cut(s)	202, 349, 835, 1101, 1137
TaaI	ACNGT	5 cut(s)	428, 846, 1064, 1186, 1210
TaqI	TCGA	4 cut(s)	43, 141, 151, 1198
TasI	AATT	3 cut(s)	45, 744, 1097
TatI	WGTACW	1 cut(s)	1186
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	3 cut(s)	448, 1150, 1200
Tru1I	TTAA	2 cut(s)	339, 738
Tru9I	TTAA	2 cut(s)	339, 738
TscAI	CASTG	3 cut(s)	277, 321, 500
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	162, 389, 935
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	163, 191, 231, 1192
TspRI	CASTG	3 cut(s)	277, 321, 500
Van91I	CCANNNNNTGG	1 cut(s)	715
VpaK11BI	GGWCC	2 cut(s)	311, 719
XapI	RAATTY	2 cut(s)	45, 1097
XbaI	TCTAGA	1 cut(s)	823
XceI	RCATGY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	3 cut(s)	21, 362, 1040
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	5 cut(s)	186, 677, 791, 824, 917
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.