Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011029

Physical Location & Seq

Genomic Coordinates Forward (+)

1742421 .. 1748170

Gene Structure 5750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCTCCTCGCACCACCCGATCGGCTCCTCCCGCCACGTCAATTATACAGACCCAACTCGCCACCGATCAGAACTCGGACTCGGACCACTCGGCTGTGCTGTAGAGCGAGTCTGATCACCAACTCGGACTCCTTCGAGGTGGGCCGACTCATTGGCAGCTATGGCTTCATGAACATCACTAGCTTTTCGGGATCTCCGGGCATAGATGCTGAATACTCATCTGGAGATTTGGGGCGGTTGAGGGTTCAAGATGTGGGAGAAGGCAGTGTAAAGATCAGGCTATATGATGGGAGAGTTACTCAGGGTCCGCTGAAAGGGGCTCCGGTGTTTTTTAAGGTTTATCCTGGAAAAAGGGCTGGTGGAAATGAGGCTGATATGATGGCTGCTAATGAGCTAAATGCTCACATATCCCTTCAAGACAGTTCAGATGGTATCTGCCAGAATCTTGTGACACTCATAGGTGGGTTTGAAACAAAAACTGGGGAGCAGTGGCTGGCTTTTCGCAATGACGGGAAATATAGTGCGGCAGATTATGGAAAAGTTATGAGTGAAAGAGTTTCAAAAAGCCGTGCTGGGGGAGGACAGGTTTGGAATAAGTTTGAGCAAGAGGAAACCATCAAACGCAGAAGATACTTTGTTACCAAGTTGCTTCAGGGCACGATGAGAGGTCTAGCATACATGCATGATCGTGAAAGGTTACACCAGAGTCTGGGACCAGCTTCTGTTATTCTCAACACAATTGTAGAGAGAGAGGCCATATACTTAGTGCCACGACTTCGGGATCTAGCCTTCTGTGTTGACATTAGGTATTCAAATCTAGAAGGGAGACCTGGACTACTGTCAGAGGGACTTTGGAGACGTGCATCTACTGCTGGTGCATTCACACCTATGGATAAAAGAGCATTTGGACTAGCAGATGACATATATGAAGCAGGTCTTTTCTTCGCATACTTGGCATTTGTTCCATTTTGTGAAGCAGGCACAATGGATGGTCTTTCATTGCAAAGGCTTTTGGAGAACACTTTCCAACTTGATCTTGGAGCAACGAGAGAGTATTGTTTAGCAGATGACGGGCTATTAGATGCTGTGAAATTCTTGGATCTTGGAGATGGTGCTGGGTGGGAGTTACTCCAGGCAATGCTGAATCCTGACTTCCGGAAACGGCCGATGGCACAGGCTGTACTCAATCATCGATTCATGACAGTGGGTGTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

406

Amino Acids

45.0

Weight (kDa)

8.64

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16810 AT5G16810
fragaria_vesca	FvH4_4g01950
malus_domestica	MD13G1202900.v1.1
prunus_persica	Prupe.1G025200_v2.0.a1 Prupe.1G025200_v2.0.a1 Prupe.1G025200_v2.0.a1
pyrus_communis	pycom13g17620
rosa_chinensis	RchiOBHm_Chr4g0388921
rosa_laevigata	RLG00000010007 RLG00000010010
rosa_multiflora	Rmu_sc0000697.1_g000001 Rmu_sc0005486.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335230
rosa_rugosa	Rorug03G0321200
rosa_samantha	Rh4AG025700 Rh4BG018900 Rh4CG028800 Rh4DG019400
rosa_wichuraiana	Rw4G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccIII	TCCGGA	1 cut(s)	1155
AciI	CCGC	4 cut(s)	32, 235, 308, 524
AclWI	GGATC	3 cut(s)	199, 789, 1107
AcoI	YGGCCR	1 cut(s)	1163
AcsI	RAATTY	1 cut(s)	1091
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	1182
AfiI	CCNNNNNNNGG	3 cut(s)	314, 574, 709
AgsI	TTSAA	5 cut(s)	248, 416, 470, 561, 813
AjiI	CACGTC	2 cut(s)	38, 860
AjnI	CCWGG	3 cut(s)	343, 829, 1131
AluBI	AGCT	4 cut(s)	159, 183, 394, 719
AluI	AGCT	4 cut(s)	159, 183, 394, 719
Alw26I	GTCTC	2 cut(s)	820, 850
AlwI	GGATC	3 cut(s)	199, 789, 1107
AlwNI	CAGNNNCTG	3 cut(s)	493, 709, 722
Aor13HI	TCCGGA	1 cut(s)	1155
AoxI	GGCC	3 cut(s)	142, 753, 1163
ApeKI	GCWGC	2 cut(s)	156, 383
ApoI	RAATTY	1 cut(s)	1091
Asp700I	GAANNNNTTC	1 cut(s)	1022
AspS9I	GGNCC	4 cut(s)	84, 142, 305, 713
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	84, 305, 713
BaeGI	GKGCMC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	168, 370
BccI	CCATC	7 cut(s)	281, 373, 422, 623, 983, 1103, 1162
BceAI	ACGGC	2 cut(s)	552, 1178
BciT130I	CCWGG	3 cut(s)	345, 831, 1133
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	820, 850
BfaI	CTAG	5 cut(s)	180, 671, 785, 818, 911
BfmI	CTRYAG	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	923
BisI	GCNGC	3 cut(s)	157, 384, 525
BlsI	GCNGC	3 cut(s)	158, 385, 526
Bme1390I	CCNGG	4 cut(s)	198, 345, 831, 1133
Bme18I	GGWCC	3 cut(s)	84, 305, 713
BmgBI	CACGTC	2 cut(s)	38, 860
BmgT120I	GGNCC	4 cut(s)	84, 142, 305, 713
BmiI	GGNNCC	4 cut(s)	26, 306, 321, 714
BmrFI	CCNGG	4 cut(s)	198, 345, 831, 1133
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	196, 872, 1072
BmuI	ACTGGG	1 cut(s)	489
BoxI	GACNNNNGTC	1 cut(s)	838
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	2 cut(s)	243, 1115
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	1192
BsaI	GGTCTC	1 cut(s)	820
BsaWI	WCCGGW	2 cut(s)	322, 1155
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 570, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 574, 709
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	3 cut(s)	511, 998, 1143
BseAI	TCCGGA	1 cut(s)	1155
BseBI	CCWGG	3 cut(s)	345, 831, 1133
BseCI	ATCGAT	1 cut(s)	1192
BseGI	GGATG	1 cut(s)	994
BseLI	CCNNNNNNNGG	3 cut(s)	314, 574, 709
BseMI	GCAATG	3 cut(s)	511, 998, 1143
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	659
BseX3I	CGGCCG	1 cut(s)	1163
BseXI	GCAGC	2 cut(s)	168, 370
BseYI	CCCAGC	2 cut(s)	572, 1115
Bsh1285I	CGRYCG	2 cut(s)	22, 1166
BshFI	GGCC	3 cut(s)	144, 755, 1165
BshVI	ATCGAT	1 cut(s)	1192
BsiEI	CGRYCG	2 cut(s)	22, 1166
BsiSI	CCGG	3 cut(s)	197, 323, 1156
BslFI	GGGAC	2 cut(s)	726, 861
BslI	CCNNNNNNNGG	3 cut(s)	314, 574, 709
BsmAI	GTCTC	2 cut(s)	820, 850
BsmBI	CGTCTC	1 cut(s)	850
BsmFI	GGGAC	2 cut(s)	726, 861
BsmI	GAATGC	1 cut(s)	878
BsnI	GGCC	3 cut(s)	144, 755, 1165
Bso31I	GGTCTC	1 cut(s)	820
Bsp1286I	GDGCHC	2 cut(s)	322, 659
Bsp13I	TCCGGA	1 cut(s)	1155
Bsp143I	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
BspACI	CCGC	4 cut(s)	32, 235, 308, 524
BspANI	GGCC	3 cut(s)	144, 755, 1165
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	1192
BspEI	TCCGGA	1 cut(s)	1155
BspHI	TCATGA	2 cut(s)	168, 1197
BspLI	GGNNCC	4 cut(s)	26, 306, 321, 714
BspMI	ACCTGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	199, 789, 1107
BspTNI	GGTCTC	1 cut(s)	820
BsrDI	GCAATG	3 cut(s)	511, 998, 1143
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
Bst2UI	CCWGG	3 cut(s)	345, 831, 1133
Bst4CI	ACNGT	3 cut(s)	422, 840, 1204
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	2 cut(s)	495, 979
BstDEI	CTNAG	2 cut(s)	300, 763
BstF5I	GGATG	1 cut(s)	994
BstKTI	GATC	9 cut(s)	22, 69, 117, 194, 276, 688, 784, 1036, 1102
BstMAI	GTCTC	2 cut(s)	820, 850
BstMBI	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
BstMCI	CGRYCG	2 cut(s)	22, 1166
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 162, 869, 953
BstNI	CCWGG	3 cut(s)	345, 831, 1133
BstNSI	RCATGY	1 cut(s)	682
BstPAI	GACNNNNGTC	1 cut(s)	838
BstSCI	CCNGG	4 cut(s)	196, 343, 829, 1131
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	168, 370
BstX2I	RGATCY	3 cut(s)	191, 781, 1099
BstYI	RGATCY	3 cut(s)	191, 781, 1099
BstZI	CGGCCG	1 cut(s)	1163
Bsu15I	ATCGAT	1 cut(s)	1192
BsuRI	GGCC	3 cut(s)	144, 755, 1165
BsuTUI	ATCGAT	1 cut(s)	1192
BtrI	CACGTC	2 cut(s)	38, 860
BtsCI	GGATG	1 cut(s)	994
BtsI	GCAGTG	2 cut(s)	271, 494
BtsIMutI	CAGTG	3 cut(s)	271, 494, 1209
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	2 cut(s)	495, 979
CaiI	CAGNNNCTG	3 cut(s)	493, 709, 722
CciI	TCATGA	2 cut(s)	168, 1197
Cfr13I	GGNCC	4 cut(s)	84, 142, 305, 713
ClaI	ATCGAT	1 cut(s)	1192
Csp6I	GTAC	1 cut(s)	1181
CviAII	CATG	4 cut(s)	169, 679, 683, 1198
CviQI	GTAC	1 cut(s)	1181
DdeI	CTNAG	2 cut(s)	300, 763
DpnI	GATC	9 cut(s)	21, 68, 116, 193, 275, 687, 783, 1035, 1101
DpnII	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
EaeI	YGGCCR	1 cut(s)	1163
EagI	CGGCCG	1 cut(s)	1163
EclXI	CGGCCG	1 cut(s)	1163
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	820
Eco47I	GGWCC	3 cut(s)	84, 305, 713
Eco52I	CGGCCG	1 cut(s)	1163
Eco57I	CTGAAG	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	343, 829, 1131
EcoT22I	ATGCAT	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	850
FaeI	CATG	4 cut(s)	172, 682, 686, 1201
FalI	AAGNNNNNCTT	2 cut(s)	921, 953
FaqI	GGGAC	2 cut(s)	726, 861
FatI	CATG	4 cut(s)	168, 678, 682, 1197
FauI	CCCGC	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	157, 384, 525
FokI	GGATG	1 cut(s)	1001
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	3 cut(s)	157, 384, 525
FspBI	CTAG	5 cut(s)	180, 671, 785, 818, 911
GluI	GCNGC	3 cut(s)	157, 384, 525
GsaI	CCCAGC	2 cut(s)	576, 1119
GsuI	CTGGAG	2 cut(s)	243, 1115
HaeIII	GGCC	3 cut(s)	144, 755, 1165
HapII	CCGG	3 cut(s)	197, 323, 1156
Hin1II	CATG	4 cut(s)	172, 682, 686, 1201
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	8 cut(s)	79, 109, 128, 147, 442, 706, 1144, 1194
HpaII	CCGG	3 cut(s)	197, 323, 1156
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	8 cut(s)	71, 78, 84, 114, 127, 427, 844, 1217
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	5 cut(s)	142, 254, 422, 799, 815
HpyCH4III	ACNGT	3 cut(s)	422, 840, 1204
HpyCH4IV	ACGT	2 cut(s)	37, 859
HpyCH4V	TGCA	4 cut(s)	682, 863, 878, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 162, 869, 953
HpyF3I	CTNAG	2 cut(s)	300, 763
HpySE526I	ACGT	2 cut(s)	37, 859
Hsp92II	CATG	4 cut(s)	172, 682, 686, 1201
Kpn2I	TCCGGA	1 cut(s)	1155
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
LmnI	GCTCC	5 cut(s)	9, 30, 325, 484, 1040
Lsp1109I	GCAGC	2 cut(s)	168, 370
LweI	GCATC	3 cut(s)	196, 872, 1072
MaeI	CTAG	5 cut(s)	180, 671, 785, 818, 911
MaeII	ACGT	2 cut(s)	37, 859
MaeIII	GTNAC	5 cut(s)	295, 448, 637, 696, 1125
MalI	GATC	9 cut(s)	21, 68, 116, 193, 275, 687, 783, 1035, 1101
MboI	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
MboII	GAAGA	2 cut(s)	639, 934
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	3 cut(s)	191, 781, 1099
MhlI	GDGCHC	2 cut(s)	322, 659
MluCI	AATT	3 cut(s)	41, 738, 1091
MlyI	GAGTC	5 cut(s)	73, 118, 122, 141, 715
MmeI	TCCRAC	1 cut(s)	1051
Mph1103I	ATGCAT	1 cut(s)	684
MroI	TCCGGA	1 cut(s)	1155
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	3 cut(s)	687, 887, 1202
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	3 cut(s)	197, 323, 1156
MspR9I	CCNGG	4 cut(s)	198, 345, 831, 1133
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	878
MvaI	CCWGG	3 cut(s)	345, 831, 1133
MwoI	GCNNNNNNNGC	4 cut(s)	31, 162, 869, 953
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
NlaIII	CATG	4 cut(s)	172, 682, 686, 1201
NlaIV	GGNNCC	4 cut(s)	26, 306, 321, 714
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	1 cut(s)	682
PagI	TCATGA	2 cut(s)	168, 1197
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	878
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	3 cut(s)	442, 1144, 1194
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	158, 385, 526
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	5 cut(s)	73, 117, 122, 141, 714
PpsI	GAGTC	5 cut(s)	73, 117, 122, 141, 714
PshAI	GACNNNNGTC	1 cut(s)	838
Psp6I	CCWGG	3 cut(s)	343, 829, 1131
PspFI	CCCAGC	2 cut(s)	572, 1115
PspGI	CCWGG	3 cut(s)	343, 829, 1131
PspN4I	GGNNCC	4 cut(s)	26, 306, 321, 714
PspPI	GGNCC	4 cut(s)	84, 142, 305, 713
PstNI	CAGNNNCTG	3 cut(s)	493, 709, 722
PsuI	RGATCY	3 cut(s)	191, 781, 1099
PvuI	CGATCG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	1182
RsaNI	GTAC	1 cut(s)	1181
RseI	CAYNNNNRTG	3 cut(s)	687, 887, 1202
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	157, 384, 525
Sau3AI	GATC	9 cut(s)	19, 66, 114, 191, 273, 685, 781, 1033, 1099
Sau96I	GGNCC	4 cut(s)	84, 142, 305, 713
SchI	GAGTC	5 cut(s)	73, 118, 122, 141, 715
ScrFI	CCNGG	4 cut(s)	198, 345, 831, 1133
SduI	GDGCHC	2 cut(s)	322, 659
SfaNI	GCATC	3 cut(s)	196, 872, 1072
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	3 cut(s)	84, 305, 713
SmiMI	CAYNNNNRTG	3 cut(s)	687, 887, 1202
Sse9I	AATT	3 cut(s)	41, 738, 1091
SsiI	CCGC	4 cut(s)	32, 235, 308, 524
SspMI	CTAG	5 cut(s)	180, 671, 785, 818, 911
StyD4I	CCNGG	4 cut(s)	196, 343, 829, 1131
TaaI	ACNGT	3 cut(s)	422, 840, 1204
TaiI	ACGT	2 cut(s)	40, 862
TaqI	TCGA	2 cut(s)	135, 1192
TasI	AATT	3 cut(s)	41, 738, 1091
TatI	WGTACW	1 cut(s)	1180
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	442, 1144, 1194
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	271, 494, 1209
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	156, 383
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	5 cut(s)	157, 185, 942, 987, 1186
TspRI	CASTG	3 cut(s)	271, 494, 1209
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	84, 305, 713
XapI	RAATTY	1 cut(s)	1091
XbaI	TCTAGA	1 cut(s)	817
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	5 cut(s)	180, 671, 785, 818, 911
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.