Rh4CG028800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011029
Physical Location & Seq
Forward (+)
5356976 .. 5362938
5963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG028800.1

Sequence Viewer

Length: 1224 bp
ATGCTCCTCGCGCCACCACCTGATTGGCTCCTTCCGGTTGGTCGAATTTACAGACCCAACTCACCAGCACCGATCAGAACACGGACTCGGACGACTCGGCTGTGCTGTAGAGCGAGTCTGATCACCAACTCGGACTCGTTCGAGGTGGGTCGACTCATTGGCAGCTATGGCTTCATGAACATCACTAGCTTTTCGGGATCTCCAGGCACAGATAATGAATACTCATCTGGAGATTTGGGGCAGTTGAGGGTTCAAGATGTAGGAGAAGGCAGTGTAAAGATCAGGCTATATGATGGGAGAGTTACTCAGGGTCCACTGAAAGGGACTCCGGTTGTTTTTAAGGTTTATCCTGGACAAAGGGCTGGTGGAATTGAGGCTGATATGATGGCTGCTAATGAGCTGAATGCTCACACATCCCTTCAGGACAGTTCAGATGGTTTCTGCCAGAATCTTGTGACACTCATAGGTGGGTTTGAAACAAGAACTGGGGAGCAGTGGCTGGCTTTTCGCAATGACGGGAAATATAGTGCGGCAGATTATGCAAAAGTTATGAGTGAAAGAGTTTCAAAAAGCCGTGCTGGGGGAGGACAGGTTTGGAATAAGTTTGAACAAGAGGAAACAATCAAACGCAGAAGATACTTTGTTACCAAGTTGCTTCAGGGTACGATGAGAGGTCTAGCATACATGCATGATCGTGAAAGGTTACACCAGAGTCTGGGACCAGCTTCTGTTATTCTGAACACAATTGTAGAGAGAGAGGCCATATACTTAGTACCAAGACTTCGGGATCTAGCCTTTTCTGTTGACATTAGGTATTCAAATCTAGAAGGGAGGCCTGGACTACTGTCAGAGGGACTTTGGAGACGAGCATCTACTGCTGGTGCCTTCACACCTATGGATAAAAGAGCATTTGGACTAGCAGATGACATATATGCAGCAGGTCTTTTCTTTGCATACTTGGCATTTGTTCCATTTTGTGAAGAAGGCACAATGGATGGTCTTTCGTTGCAAAGGCTTTTGGAGAGCACTTTCCAACTTGATATTGGAGCAACAAGAGAATACTGTTTAGCAGATGACAGGCTATTAGATGCTGTGAAATTCCTGGATCTTGGAGATGGTGCTGGTTGGGAGTTACTCCAGGCAATGCTGAATCCTGACTTCCGGAAACGGCCGATGGCACAGACTGTACTCAATCATCGATTCATGACGGTGGGTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

407

Amino Acids

45.26

Weight (kDa)

8.2

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 929
AccB1I GGYRCC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 715
AccI GTMKAC 1 cut(s) 151
AccII CGCG 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 1161
AciI CCGC 1 cut(s) 530
AclWI GGATC 3 cut(s) 205, 795, 1113
AcoI YGGCCR 1 cut(s) 1169
AcsI RAATTY 2 cut(s) 45, 1097
AcuI CTGAAG 2 cut(s) 404, 641
AfaI GTAC 3 cut(s) 664, 774, 1188
AfiI CCNNNNNNNGG 3 cut(s) 320, 580, 715
AgsI TTSAA 5 cut(s) 254, 476, 567, 608, 819
AjnI CCWGG 5 cut(s) 202, 349, 835, 1101, 1137
AluBI AGCT 4 cut(s) 165, 189, 400, 725
AluI AGCT 4 cut(s) 165, 189, 400, 725
Alw21I GWGCWC 1 cut(s) 1028
Alw26I GTCTC 1 cut(s) 856
AlwI GGATC 3 cut(s) 205, 795, 1113
AlwNI CAGNNNCTG 3 cut(s) 499, 715, 728
Aor13HI TCCGGA 1 cut(s) 1161
AoxI GGCC 3 cut(s) 759, 833, 1169
ApeKI GCWGC 3 cut(s) 162, 389, 935
ApoI RAATTY 2 cut(s) 45, 1097
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 311, 719
AsuHPI GGTGA 2 cut(s) 54, 115
AvaII GGWCC 2 cut(s) 311, 719
BanI GGYRCC 1 cut(s) 881
BarI GAAGNNNNNNTAC 2 cut(s) 765, 797
Bbv12I GWGCWC 1 cut(s) 1028
BbvI GCAGC 3 cut(s) 174, 376, 947
BccI CCATC 6 cut(s) 287, 379, 428, 989, 1109, 1168
BceAI ACGGC 2 cut(s) 558, 1184
BciT130I CCWGG 5 cut(s) 204, 351, 837, 1103, 1139
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 856
BfaI CTAG 5 cut(s) 186, 677, 791, 824, 917
BfmI CTRYAG 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 929
BisI GCNGC 4 cut(s) 163, 390, 531, 936
BlsI GCNGC 4 cut(s) 164, 391, 532, 937
Bme1390I CCNGG 5 cut(s) 204, 351, 837, 1103, 1139
Bme18I GGWCC 2 cut(s) 311, 719
BmgT120I GGNCC 2 cut(s) 311, 719
BmiI GGNNCC 4 cut(s) 29, 312, 720, 883
BmrFI CCNGG 5 cut(s) 204, 351, 837, 1103, 1139
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 878, 1078
BmuI ACTGGG 1 cut(s) 495
BoxI GACNNNNGTC 1 cut(s) 844
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 3 cut(s) 186, 249, 1121
Bsa29I ATCGAT 1 cut(s) 1198
BsaWI WCCGGW 3 cut(s) 34, 328, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 580, 715
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 2 cut(s) 517, 1149
BseAI TCCGGA 1 cut(s) 1161
BseBI CCWGG 5 cut(s) 204, 351, 837, 1103, 1139
BseCI ATCGAT 1 cut(s) 1198
BseGI GGATG 2 cut(s) 413, 1000
BseLI CCNNNNNNNGG 3 cut(s) 320, 580, 715
BseMI GCAATG 2 cut(s) 517, 1149
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 490
BseX3I CGGCCG 1 cut(s) 1169
BseXI GCAGC 3 cut(s) 174, 376, 947
BseYI CCCAGC 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 1172
BshFI GGCC 3 cut(s) 761, 835, 1171
BshNI GGYRCC 1 cut(s) 881
BshVI ATCGAT 1 cut(s) 1198
BsiEI CGRYCG 1 cut(s) 1172
BsiHKAI GWGCWC 1 cut(s) 1028
BsiSI CCGG 3 cut(s) 35, 329, 1162
BslFI GGGAC 3 cut(s) 337, 732, 867
BslI CCNNNNNNNGG 3 cut(s) 320, 580, 715
BsmAI GTCTC 1 cut(s) 856
BsmBI CGTCTC 1 cut(s) 856
BsmFI GGGAC 3 cut(s) 337, 732, 867
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 761, 835, 1171
Bsp1286I GDGCHC 1 cut(s) 1028
Bsp13I TCCGGA 1 cut(s) 1161
Bsp143I GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
BspACI CCGC 1 cut(s) 530
BspANI GGCC 3 cut(s) 761, 835, 1171
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 1198
BspEI TCCGGA 1 cut(s) 1161
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 2 cut(s) 174, 1203
BspLI GGNNCC 4 cut(s) 29, 312, 720, 883
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 3 cut(s) 205, 795, 1113
BspT107I GGYRCC 1 cut(s) 881
BsrDI GCAATG 2 cut(s) 517, 1149
BsrI ACTGG 1 cut(s) 490
BssMI GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
Bst2UI CCWGG 5 cut(s) 204, 351, 837, 1103, 1139
Bst4CI ACNGT 5 cut(s) 428, 846, 1064, 1186, 1210
BstAPI GCANNNNNTGC 2 cut(s) 539, 875
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 2 cut(s) 306, 769
BstF5I GGATG 2 cut(s) 413, 1000
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 7 cut(s) 75, 123, 200, 282, 694, 790, 1108
BstMAI GTCTC 1 cut(s) 856
BstMBI GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
BstMCI CGRYCG 1 cut(s) 1172
BstMWI GCNNNNNNNGC 5 cut(s) 10, 168, 539, 875, 959
BstNI CCWGG 5 cut(s) 204, 351, 837, 1103, 1139
BstNSI RCATGY 1 cut(s) 688
BstPAI GACNNNNGTC 1 cut(s) 844
BstSCI CCNGG 5 cut(s) 202, 349, 835, 1101, 1137
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 174, 376, 947
BstX2I RGATCY 3 cut(s) 197, 787, 1105
BstXI CCANNNNNNTGG 1 cut(s) 24
BstYI RGATCY 3 cut(s) 197, 787, 1105
BstZI CGGCCG 1 cut(s) 1169
Bsu15I ATCGAT 1 cut(s) 1198
BsuRI GGCC 3 cut(s) 761, 835, 1171
BsuTUI ATCGAT 1 cut(s) 1198
BtsCI GGATG 2 cut(s) 413, 1000
BtsI GCAGTG 2 cut(s) 277, 500
BtsIMutI CAGTG 3 cut(s) 277, 314, 500
BveI ACCTGC 1 cut(s) 929
Cac8I GCNNGC 1 cut(s) 501
CaiI CAGNNNCTG 3 cut(s) 499, 715, 728
CciI TCATGA 2 cut(s) 174, 1203
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 311, 719
ClaI ATCGAT 1 cut(s) 1198
Csp6I GTAC 3 cut(s) 663, 773, 1187
CviAII CATG 4 cut(s) 175, 685, 689, 1204
CviQI GTAC 3 cut(s) 663, 773, 1187
DdeI CTNAG 2 cut(s) 306, 769
DpnI GATC 7 cut(s) 74, 122, 199, 281, 693, 789, 1107
DpnII GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
EaeI YGGCCR 1 cut(s) 1169
EagI CGGCCG 1 cut(s) 1169
EclXI CGGCCG 1 cut(s) 1169
Eco147I AGGCCT 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 311, 719
Eco52I CGGCCG 1 cut(s) 1169
Eco57I CTGAAG 2 cut(s) 404, 641
EcoRII CCWGG 5 cut(s) 202, 349, 835, 1101, 1137
EcoT22I ATGCAT 1 cut(s) 690
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 4 cut(s) 178, 688, 692, 1207
FaqI GGGAC 3 cut(s) 337, 732, 867
FatI CATG 4 cut(s) 174, 684, 688, 1203
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 4 cut(s) 163, 390, 531, 936
FokI GGATG 2 cut(s) 400, 1007
Fsp4HI GCNGC 4 cut(s) 163, 390, 531, 936
FspBI CTAG 5 cut(s) 186, 677, 791, 824, 917
GlaI GCGC 1 cut(s) 12
GluI GCNGC 4 cut(s) 163, 390, 531, 936
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 3 cut(s) 186, 249, 1121
HaeIII GGCC 3 cut(s) 761, 835, 1171
HapII CCGG 3 cut(s) 35, 329, 1162
HhaI GCGC 1 cut(s) 13
Hin1II CATG 4 cut(s) 178, 688, 692, 1207
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 2 cut(s) 152, 805
HindII GTYRAC 2 cut(s) 152, 805
HpaII CCGG 3 cut(s) 35, 329, 1162
HphI GGTGA 2 cut(s) 54, 115
Hpy166II GTNNAC 3 cut(s) 152, 314, 805
Hpy188I TCNGA 7 cut(s) 77, 90, 120, 133, 433, 738, 850
Hpy8I GTNNAC 3 cut(s) 152, 314, 805
HpyAV CCTTC 6 cut(s) 41, 260, 428, 821, 895, 977
HpyCH4III ACNGT 5 cut(s) 428, 846, 1064, 1186, 1210
HpyCH4V TGCA 5 cut(s) 542, 688, 935, 953, 1009
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 168, 539, 875, 959
HpyF3I CTNAG 2 cut(s) 306, 769
Hsp92II CATG 4 cut(s) 178, 688, 692, 1207
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 1161
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
LmnI GCTCC 4 cut(s) 9, 33, 490, 1046
Lsp1109I GCAGC 3 cut(s) 174, 376, 947
LweI GCATC 2 cut(s) 878, 1078
MaeI CTAG 5 cut(s) 186, 677, 791, 824, 917
MaeIII GTNAC 5 cut(s) 301, 454, 643, 702, 1131
MalI GATC 7 cut(s) 74, 122, 199, 281, 693, 789, 1107
MboI GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
MboII GAAGA 2 cut(s) 645, 992
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 3 cut(s) 197, 787, 1105
MhlI GDGCHC 1 cut(s) 1028
MluCI AATT 4 cut(s) 45, 369, 744, 1097
MlyI GAGTC 7 cut(s) 79, 88, 124, 128, 147, 319, 721
MmeI TCCRAC 1 cut(s) 1057
Mph1103I ATGCAT 1 cut(s) 690
MroI TCCGGA 1 cut(s) 1161
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 3 cut(s) 693, 893, 1208
MspI CCGG 3 cut(s) 35, 329, 1162
MspR9I CCNGG 5 cut(s) 204, 351, 837, 1103, 1139
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 5 cut(s) 204, 351, 837, 1103, 1139
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 5 cut(s) 10, 168, 539, 875, 959
NdeII GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
NlaIII CATG 4 cut(s) 178, 688, 692, 1207
NlaIV GGNNCC 4 cut(s) 29, 312, 720, 883
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 1 cut(s) 688
PagI TCATGA 2 cut(s) 174, 1203
PceI AGGCCT 1 cut(s) 835
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 448, 1150, 1200
PflMI CCANNNNNTGG 1 cut(s) 715
PfoI TCCNGGA 2 cut(s) 349, 1101
PkrI GCNGC 4 cut(s) 164, 391, 532, 937
PleI GAGTC 7 cut(s) 79, 88, 123, 128, 147, 319, 720
PpsI GAGTC 7 cut(s) 79, 88, 123, 128, 147, 319, 720
PshAI GACNNNNGTC 1 cut(s) 844
Psp6I CCWGG 5 cut(s) 202, 349, 835, 1101, 1137
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 5 cut(s) 202, 349, 835, 1101, 1137
PspN4I GGNNCC 4 cut(s) 29, 312, 720, 883
PspPI GGNCC 2 cut(s) 311, 719
PstNI CAGNNNCTG 3 cut(s) 499, 715, 728
PsuI RGATCY 3 cut(s) 197, 787, 1105
RsaI GTAC 3 cut(s) 664, 774, 1188
RsaNI GTAC 3 cut(s) 663, 773, 1187
RseI CAYNNNNRTG 3 cut(s) 693, 893, 1208
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 4 cut(s) 163, 390, 531, 936
Sau3AI GATC 7 cut(s) 72, 120, 197, 279, 691, 787, 1105
Sau96I GGNCC 2 cut(s) 311, 719
SchI GAGTC 7 cut(s) 79, 88, 124, 128, 147, 319, 721
ScrFI CCNGG 5 cut(s) 204, 351, 837, 1103, 1139
SduI GDGCHC 1 cut(s) 1028
SfaNI GCATC 2 cut(s) 878, 1078
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 311, 719
SmiMI CAYNNNNRTG 3 cut(s) 693, 893, 1208
Sse9I AATT 4 cut(s) 45, 369, 744, 1097
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 1 cut(s) 530
SspMI CTAG 5 cut(s) 186, 677, 791, 824, 917
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 5 cut(s) 202, 349, 835, 1101, 1137
TaaI ACNGT 5 cut(s) 428, 846, 1064, 1186, 1210
TaqI TCGA 4 cut(s) 43, 141, 151, 1198
TasI AATT 4 cut(s) 45, 369, 744, 1097
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 3 cut(s) 448, 1150, 1200
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 3 cut(s) 277, 321, 500
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 162, 389, 935
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 4 cut(s) 163, 191, 231, 1192
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 3 cut(s) 277, 321, 500
Van91I CCANNNNNTGG 1 cut(s) 715
VpaK11BI GGWCC 2 cut(s) 311, 719
XapI RAATTY 2 cut(s) 45, 1097
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 2 cut(s) 21, 1040
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 5 cut(s) 186, 677, 791, 824, 917
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.