Rh4AG025700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011029
Physical Location & Seq
Forward (+)
4944735 .. 4974070
29336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG025700.1

Sequence Viewer

Length: 1377 bp
ATGTGGCATTCTATAATTGGACTAAAGCCCCTCAATTATTATATTCTCGGGAACAGAGCGTCTCTTATCTTCTCTTTCACAACTACCTACCTTAACTACTACTTGGCGCCATTTCTGAAAGACAGACAGAGAGAGTGTCACTGTAAAACGACCATGCTCCTCGCGCCACCACCTGATTGGCTCCTTCCGGTTGGTCGAATTTACAGACCCAACTCACCAGCACCGATCAGAACTCGGACTCGGACGACTCGGCTGTGCTGTAGAGCGAGTCTGATCACCAACTCGGACTCGTTCGAGGTGGGTCGACTCATTGGCAGCTATGGCTTCATGAACATCACTAGCTTTTCGGGATCTCCAGGCACAGATAATGAATACTCAACTGGAGATTTGGGGCAGTTGAGGGTTCAAGATGTAGGAGAAGGCAGTGTAAAGATCAGGCTATATGATGGGAGAGTTACTCAGGGTCCACTGAAAGGGACTCCGGTTGTTTTTAAGGTTTATCCTGGACAAAGGGCTGGTGGAATTGAGGCTGATATGATGGCTGCTAATGAGCTAAATGCTCACACATCCCTTCAGGACAGTTCAGATGGTATCTGCCAGAATCTTGTGACACTCATAGGTGGGTTTGAAACAAGAACTGGGGAGCAGTGGCTGGCTTTTCGCAATGACGGGAAATATAGTGCGGCAGATTATGCAAAAGTTATGAGTGAAAGAGTTTCAAAAAGCCGTGCTGGGGGAGGACAGGTTTGGAATAAGTTTGAACAAGAGGAAACAATCAAACGCAGAAGATACTTTGTTACCAAGTTGCTTCAGGGCACGATGAGAGGTCTAGCATACATGCATGATCGTGAAAGGTTACACCAGAGTCTGGGACCAGCTTCTGTTATTCTTAACACAATTGTAGAGAGAGAGGCCATATACTTAGTACCAAGACTTCGGGATCTAGCCTTTTCTGTTGACATTAGGTATTCAAATCTAGAAGGGAGGCCTGGACTACTGTCCGAGGGACTTTGGAGACGAGCATCTACTGCTGGTGCCTTCACGCCTATGGATAAAAGAGCATTTGGACTAGCAGATGACATATATGCAGCAGGTCTTTTCTTTGCATACTTGGCATTTGTTCCATTTTGTGAAGAAGGCACAATGGATGGTCTTTCGTTGCAAAGGCTTTTGGAGAGCACTTTCCAACTTGATATTGGAGCAACAAGAGAATACTGTTTAGCAGATGACGGGCTATTAGATGCTGTGAAATTCTTGGATCTTGGAGATGGTGCTGGTTGGGAGTTACTCCAGGCAATGCTGAATCCTGACTTCCGGAAACGGCCGATGGCACAGACTGTACTCAATCATCGATTCATGACGGTGGGTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

458

Amino Acids

51.23

Weight (kDa)

8.71

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1082
AccB1I GGYRCC 2 cut(s) 106, 1034
AccB7I CCANNNNNTGG 1 cut(s) 868
AccI GTMKAC 1 cut(s) 304
AccII CGCG 1 cut(s) 164
AccIII TCCGGA 1 cut(s) 1314
AciI CCGC 1 cut(s) 683
AclWI GGATC 3 cut(s) 358, 948, 1266
AcoI YGGCCR 1 cut(s) 1322
AcsI RAATTY 2 cut(s) 198, 1250
AcuI CTGAAG 2 cut(s) 557, 794
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 927, 1341
AfiI CCNNNNNNNGG 3 cut(s) 473, 733, 868
AgsI TTSAA 5 cut(s) 407, 629, 720, 761, 972
AjnI CCWGG 4 cut(s) 355, 502, 988, 1290
AluBI AGCT 4 cut(s) 318, 342, 553, 878
AluI AGCT 4 cut(s) 318, 342, 553, 878
Alw21I GWGCWC 1 cut(s) 1181
Alw26I GTCTC 2 cut(s) 66, 1009
AlwI GGATC 3 cut(s) 358, 948, 1266
AlwNI CAGNNNCTG 3 cut(s) 652, 868, 881
Ama87I CYCGRG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 1314
AoxI GGCC 3 cut(s) 912, 986, 1322
ApeKI GCWGC 3 cut(s) 315, 542, 1088
ApoI RAATTY 2 cut(s) 198, 1250
AspLEI GCGC 2 cut(s) 109, 166
AspS9I GGNCC 2 cut(s) 464, 872
AsuHPI GGTGA 2 cut(s) 207, 268
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 2 cut(s) 464, 872
BaeGI GKGCMC 1 cut(s) 818
BanI GGYRCC 2 cut(s) 106, 1034
BarI GAAGNNNNNNTAC 2 cut(s) 918, 950
Bbv12I GWGCWC 1 cut(s) 1181
BbvI GCAGC 3 cut(s) 327, 529, 1100
BccI CCATC 6 cut(s) 440, 532, 581, 1142, 1262, 1321
BceAI ACGGC 2 cut(s) 711, 1337
BciT130I CCWGG 4 cut(s) 357, 504, 990, 1292
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 66, 1009
BfaI CTAG 5 cut(s) 339, 830, 944, 977, 1070
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 1082
BisI GCNGC 4 cut(s) 316, 543, 684, 1089
BlsI GCNGC 4 cut(s) 317, 544, 685, 1090
Bme1390I CCNGG 4 cut(s) 357, 504, 990, 1292
Bme18I GGWCC 2 cut(s) 464, 872
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 464, 872
BmiI GGNNCC 5 cut(s) 108, 182, 465, 873, 1036
BmrFI CCNGG 4 cut(s) 357, 504, 990, 1292
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 1031, 1231
BmuI ACTGGG 1 cut(s) 648
BoxI GACNNNNGTC 1 cut(s) 997
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 3 cut(s) 339, 402, 1274
Bsa29I ATCGAT 1 cut(s) 1351
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 1002
BsaWI WCCGGW 3 cut(s) 187, 481, 1314
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 733, 868
Bse1I ACTGG 2 cut(s) 385, 643
Bse3DI GCAATG 2 cut(s) 670, 1302
BseAI TCCGGA 1 cut(s) 1314
BseBI CCWGG 4 cut(s) 357, 504, 990, 1292
BseCI ATCGAT 1 cut(s) 1351
BseDI CCNNGG 1 cut(s) 1002
BseGI GGATG 2 cut(s) 566, 1153
BseLI CCNNNNNNNGG 3 cut(s) 473, 733, 868
BseMI GCAATG 2 cut(s) 670, 1302
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 2 cut(s) 385, 643
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 818
BseX3I CGGCCG 1 cut(s) 1322
BseXI GCAGC 3 cut(s) 327, 529, 1100
BseYI CCCAGC 1 cut(s) 731
Bsh1236I CGCG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 1325
BshFI GGCC 3 cut(s) 914, 988, 1324
BshNI GGYRCC 2 cut(s) 106, 1034
BshVI ATCGAT 1 cut(s) 1351
BsiEI CGRYCG 1 cut(s) 1325
BsiHKAI GWGCWC 1 cut(s) 1181
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 3 cut(s) 188, 482, 1315
BslFI GGGAC 3 cut(s) 490, 885, 1020
BslI CCNNNNNNNGG 3 cut(s) 473, 733, 868
BsmAI GTCTC 2 cut(s) 66, 1009
BsmBI CGTCTC 2 cut(s) 66, 1009
BsmFI GGGAC 3 cut(s) 490, 885, 1020
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 3 cut(s) 914, 988, 1324
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 818, 1181
Bsp13I TCCGGA 1 cut(s) 1314
Bsp143I GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
BspACI CCGC 1 cut(s) 683
BspANI GGCC 3 cut(s) 914, 988, 1324
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 1 cut(s) 1351
BspEI TCCGGA 1 cut(s) 1314
BspFNI CGCG 1 cut(s) 164
BspHI TCATGA 2 cut(s) 327, 1356
BspLI GGNNCC 5 cut(s) 108, 182, 465, 873, 1036
BspMI ACCTGC 1 cut(s) 1082
BspPI GGATC 3 cut(s) 358, 948, 1266
BspT107I GGYRCC 2 cut(s) 106, 1034
BsrDI GCAATG 2 cut(s) 670, 1302
BsrI ACTGG 2 cut(s) 385, 643
BssECI CCNNGG 1 cut(s) 1002
BssMI GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 4 cut(s) 357, 504, 990, 1292
Bst4CI ACNGT 6 cut(s) 143, 581, 999, 1217, 1339, 1363
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 2 cut(s) 692, 1028
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 2 cut(s) 459, 922
BstF5I GGATG 2 cut(s) 566, 1153
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 109, 166
BstKTI GATC 7 cut(s) 228, 276, 353, 435, 847, 943, 1261
BstMAI GTCTC 2 cut(s) 66, 1009
BstMBI GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
BstMCI CGRYCG 1 cut(s) 1325
BstMWI GCNNNNNNNGC 5 cut(s) 163, 321, 692, 1028, 1112
BstNI CCWGG 4 cut(s) 357, 504, 990, 1292
BstNSI RCATGY 1 cut(s) 841
BstPAI GACNNNNGTC 1 cut(s) 997
BstSCI CCNGG 4 cut(s) 355, 502, 988, 1290
BstSFI CTRYAG 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 818
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 327, 529, 1100
BstX2I RGATCY 3 cut(s) 350, 940, 1258
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 3 cut(s) 350, 940, 1258
BstZI CGGCCG 1 cut(s) 1322
Bsu15I ATCGAT 1 cut(s) 1351
BsuRI GGCC 3 cut(s) 914, 988, 1324
BsuTUI ATCGAT 1 cut(s) 1351
BtsCI GGATG 2 cut(s) 566, 1153
BtsI GCAGTG 2 cut(s) 430, 653
BtsIMutI CAGTG 4 cut(s) 139, 430, 467, 653
BveI ACCTGC 1 cut(s) 1082
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 3 cut(s) 652, 868, 881
CciI TCATGA 2 cut(s) 327, 1356
CfoI GCGC 2 cut(s) 109, 166
Cfr13I GGNCC 2 cut(s) 464, 872
ClaI ATCGAT 1 cut(s) 1351
CseI GACGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 926, 1340
CviAII CATG 5 cut(s) 154, 328, 838, 842, 1357
CviQI GTAC 2 cut(s) 926, 1340
DdeI CTNAG 2 cut(s) 459, 922
DinI GGCGCC 1 cut(s) 108
DpnI GATC 7 cut(s) 227, 275, 352, 434, 846, 942, 1260
DpnII GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
EaeI YGGCCR 1 cut(s) 1322
EagI CGGCCG 1 cut(s) 1322
EclXI CGGCCG 1 cut(s) 1322
Eco147I AGGCCT 1 cut(s) 988
Eco47I GGWCC 2 cut(s) 464, 872
Eco52I CGGCCG 1 cut(s) 1322
Eco57I CTGAAG 2 cut(s) 557, 794
Eco88I CYCGRG 1 cut(s) 47
EcoRII CCWGG 4 cut(s) 355, 502, 988, 1290
EcoT22I ATGCAT 1 cut(s) 843
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
Esp3I CGTCTC 2 cut(s) 66, 1009
FaeI CATG 5 cut(s) 157, 331, 841, 845, 1360
FaqI GGGAC 3 cut(s) 490, 885, 1020
FatI CATG 5 cut(s) 153, 327, 837, 841, 1356
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 316, 543, 684, 1089
FokI GGATG 2 cut(s) 553, 1160
Fsp4HI GCNGC 4 cut(s) 316, 543, 684, 1089
FspBI CTAG 5 cut(s) 339, 830, 944, 977, 1070
GlaI GCGC 2 cut(s) 108, 165
GluI GCNGC 4 cut(s) 316, 543, 684, 1089
GsaI CCCAGC 1 cut(s) 735
GsuI CTGGAG 3 cut(s) 339, 402, 1274
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 914, 988, 1324
HapII CCGG 3 cut(s) 188, 482, 1315
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 109, 166
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 5 cut(s) 157, 331, 841, 845, 1360
Hin6I GCGC 2 cut(s) 107, 164
HinP1I GCGC 2 cut(s) 107, 164
HincII GTYRAC 2 cut(s) 305, 958
HindII GTYRAC 2 cut(s) 305, 958
HpaII CCGG 3 cut(s) 188, 482, 1315
HphI GGTGA 2 cut(s) 207, 268
Hpy166II GTNNAC 3 cut(s) 305, 467, 958
Hpy188I TCNGA 8 cut(s) 117, 230, 237, 243, 273, 286, 586, 1003
Hpy8I GTNNAC 3 cut(s) 305, 467, 958
HpyAV CCTTC 6 cut(s) 194, 413, 581, 974, 1048, 1130
HpyCH4III ACNGT 6 cut(s) 143, 581, 999, 1217, 1339, 1363
HpyCH4V TGCA 5 cut(s) 695, 841, 1088, 1106, 1162
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 321, 692, 1028, 1112
HpyF3I CTNAG 2 cut(s) 459, 922
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 5 cut(s) 157, 331, 841, 845, 1360
HspAI GCGC 2 cut(s) 107, 164
KasI GGCGCC 1 cut(s) 106
Kpn2I TCCGGA 1 cut(s) 1314
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
LmnI GCTCC 4 cut(s) 162, 186, 643, 1199
Lsp1109I GCAGC 3 cut(s) 327, 529, 1100
LweI GCATC 2 cut(s) 1031, 1231
MaeI CTAG 5 cut(s) 339, 830, 944, 977, 1070
MaeIII GTNAC 6 cut(s) 137, 454, 607, 796, 855, 1284
MalI GATC 7 cut(s) 227, 275, 352, 434, 846, 942, 1260
MboI GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
MboII GAAGA 3 cut(s) 61, 798, 1145
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 3 cut(s) 350, 940, 1258
MhlI GDGCHC 2 cut(s) 818, 1181
MluCI AATT 6 cut(s) 15, 34, 198, 522, 897, 1250
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 7 cut(s) 232, 241, 277, 281, 300, 472, 874
MmeI TCCRAC 1 cut(s) 1210
Mph1103I ATGCAT 1 cut(s) 843
MroI TCCGGA 1 cut(s) 1314
MseI TTAA 3 cut(s) 93, 492, 891
MslI CAYNNNNRTG 3 cut(s) 846, 1046, 1361
MspI CCGG 3 cut(s) 188, 482, 1315
MspR9I CCNGG 4 cut(s) 357, 504, 990, 1292
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 4 cut(s) 357, 504, 990, 1292
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 5 cut(s) 163, 321, 692, 1028, 1112
NarI GGCGCC 1 cut(s) 107
NdeII GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
NlaIII CATG 5 cut(s) 157, 331, 841, 845, 1360
NlaIV GGNNCC 5 cut(s) 108, 182, 465, 873, 1036
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 137, 607
NsiI ATGCAT 1 cut(s) 843
NspI RCATGY 1 cut(s) 841
PagI TCATGA 2 cut(s) 327, 1356
PceI AGGCCT 1 cut(s) 988
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 3 cut(s) 601, 1303, 1353
PflMI CCANNNNNTGG 1 cut(s) 868
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 4 cut(s) 317, 544, 685, 1090
PleI GAGTC 7 cut(s) 232, 241, 276, 281, 300, 472, 873
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 7 cut(s) 232, 241, 276, 281, 300, 472, 873
PshAI GACNNNNGTC 1 cut(s) 997
Psp6I CCWGG 4 cut(s) 355, 502, 988, 1290
PspFI CCCAGC 1 cut(s) 731
PspGI CCWGG 4 cut(s) 355, 502, 988, 1290
PspN4I GGNNCC 5 cut(s) 108, 182, 465, 873, 1036
PspPI GGNCC 2 cut(s) 464, 872
PstNI CAGNNNCTG 3 cut(s) 652, 868, 881
PsuI RGATCY 3 cut(s) 350, 940, 1258
RsaI GTAC 2 cut(s) 927, 1341
RsaNI GTAC 2 cut(s) 926, 1340
RseI CAYNNNNRTG 3 cut(s) 846, 1046, 1361
SalI GTCGAC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 93, 492, 891
SatI GCNGC 4 cut(s) 316, 543, 684, 1089
Sau3AI GATC 7 cut(s) 225, 273, 350, 432, 844, 940, 1258
Sau96I GGNCC 2 cut(s) 464, 872
SchI GAGTC 7 cut(s) 232, 241, 277, 281, 300, 472, 874
ScrFI CCNGG 4 cut(s) 357, 504, 990, 1292
SduI GDGCHC 2 cut(s) 818, 1181
SfaNI GCATC 2 cut(s) 1031, 1231
SfcI CTRYAG 1 cut(s) 259
SfoI GGCGCC 1 cut(s) 108
SinI GGWCC 2 cut(s) 464, 872
SmiMI CAYNNNNRTG 3 cut(s) 846, 1046, 1361
Sse9I AATT 6 cut(s) 15, 34, 198, 522, 897, 1250
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 1 cut(s) 683
SspDI GGCGCC 1 cut(s) 106
SspMI CTAG 5 cut(s) 339, 830, 944, 977, 1070
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 4 cut(s) 355, 502, 988, 1290
TaaI ACNGT 6 cut(s) 143, 581, 999, 1217, 1339, 1363
TaqI TCGA 4 cut(s) 196, 294, 304, 1351
TasI AATT 6 cut(s) 15, 34, 198, 522, 897, 1250
TatI WGTACW 1 cut(s) 1339
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 3 cut(s) 601, 1303, 1353
Tru1I TTAA 3 cut(s) 93, 492, 891
Tru9I TTAA 3 cut(s) 93, 492, 891
TscAI CASTG 4 cut(s) 146, 430, 474, 653
TseFI GTSAC 2 cut(s) 137, 607
TseI GCWGC 3 cut(s) 315, 542, 1088
Tsp45I GTSAC 2 cut(s) 137, 607
TspDTI ATGAA 4 cut(s) 316, 344, 384, 1345
TspRI CASTG 4 cut(s) 146, 430, 474, 653
Van91I CCANNNNNTGG 1 cut(s) 868
VpaK11BI GGWCC 2 cut(s) 464, 872
XapI RAATTY 2 cut(s) 198, 1250
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 1 cut(s) 841
XcmI CCANNNNNNNNNTGG 2 cut(s) 174, 1193
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 5 cut(s) 339, 830, 944, 977, 1070
Zsp2I ATGCAT 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.