AT5G17210

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009101
Physical Location & Seq
Forward (+)
5656348 .. 5658193
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17210.2

Sequence Viewer

Length: 630 bp
ATGGAGAGGAGAAAGATTGTGATGTGTGGTGTTTTATTTCTTCTTGGTTTATTATCAGCTGTTACTGCCTTCGTCGCTGAAGCTACTCGAATCAAGAGATCTCAGGTCACGGTTACCGTTTCGGATTCAATCACAAAATGCACTTATCCAAGAAGTCCAGCTTTCAATCTCGGCTTCACTTCAGCTCTCTTTCTGATGATGGCTCAGATAATAGTCAGTGTCTCAAGCGGTTGTTTCTGTTGTAGAAAAGGTCCTGCTCCTTCAAGGTCTAATTGGATTATCTCCTTAATCTGCTTTGTTGTTTCCTGGTTCACTTTTGTAATAGCTTTCCTCGTGCTGCTTTCTGGAGCTGCACTCAACGATGAACACACCGAGGAATCAATGAATGCTGGTACCTACTTTTGCTACATAGTGAAACCAGGCGTTTTCTCTACCGGTGCTGTGCTTTCGCTTGTTACTATTGCCCTTGGGATTGTCTACTATTTATGTTTGACTTCAAATAAGCAAATTGTTGCTGCCACAACGACCCAAGGAACAGGAATAGCAATGGGGCAGCCTCAGATTCCAGAGAGAGTAGAAGATCCTGTTTTTGTTCATGAGGATACTTACATGAGAAGACAGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

209

Amino Acids

22.87

Weight (kDa)

8.66

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 1 - 89 1.1e-27 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 477
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 99, 165
AfaI GTAC 1 cut(s) 394
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 4 cut(s) 129, 166, 264, 498
AjnI CCWGG 2 cut(s) 305, 418
AluBI AGCT 6 cut(s) 59, 83, 161, 185, 326, 350
AluI AGCT 6 cut(s) 59, 83, 161, 185, 326, 350
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 575
ApeKI GCWGC 4 cut(s) 337, 350, 515, 553
AsiGI ACCGGT 1 cut(s) 434
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 392
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 622
BbvI GCAGC 4 cut(s) 324, 337, 502, 565
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 307, 420
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 226
BfuI GTATCC 1 cut(s) 595
BglII AGATCT 1 cut(s) 98
BisI GCNGC 4 cut(s) 338, 351, 516, 554
BlsI GCNGC 4 cut(s) 339, 352, 517, 555
Bme1390I CCNGG 2 cut(s) 307, 420
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 2 cut(s) 307, 420
BpiI GAAGAC 1 cut(s) 622
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 372, 466, 529
BsaWI WCCGGW 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 307, 420
BseDI CCNNGG 3 cut(s) 372, 466, 529
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 3 cut(s) 116, 218, 572
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 4 cut(s) 324, 337, 502, 565
BsgI GTGCAG 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 392
BshTI ACCGGT 1 cut(s) 434
BsiSI CCGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 98, 580
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 3 cut(s) 115, 217, 571
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 372, 466, 529
BssMI GATC 2 cut(s) 98, 580
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 466, 529
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 307, 420
Bst4CI ACNGT 3 cut(s) 112, 118, 621
BstDEI CTNAG 3 cut(s) 102, 204, 558
BstEII GGTNACC 1 cut(s) 112
BstKTI GATC 2 cut(s) 101, 583
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 2 cut(s) 98, 580
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNI CCWGG 2 cut(s) 307, 420
BstPI GGTNACC 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 305, 418
BstV1I GCAGC 4 cut(s) 324, 337, 502, 565
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 2 cut(s) 98, 580
BstYI RGATCY 2 cut(s) 98, 580
BsuI GTATCC 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 223
CciI TCATGA 1 cut(s) 595
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 393
CspAI ACCGGT 1 cut(s) 434
CviAII CATG 2 cut(s) 596, 610
CviJI RGCY 9 cut(s) 59, 83, 161, 174, 185, 203, 326, 350, 556
CviKI_1 RGCY 9 cut(s) 59, 83, 161, 174, 185, 203, 326, 350, 556
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 3 cut(s) 102, 204, 558
DpnI GATC 2 cut(s) 100, 582
DpnII GATC 2 cut(s) 98, 580
Eco130I CCWWGG 2 cut(s) 466, 529
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 99, 165
Eco91I GGTNACC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 305, 418
EcoT14I CCWWGG 2 cut(s) 466, 529
ErhI CCWWGG 2 cut(s) 466, 529
FaeI CATG 2 cut(s) 599, 613
FaiI YATR 4 cut(s) 410, 487, 597, 611
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 2 cut(s) 595, 609
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 4 cut(s) 338, 351, 516, 554
Fsp4HI GCNGC 4 cut(s) 338, 351, 516, 554
GluI GCNGC 4 cut(s) 338, 351, 516, 554
GsuI CTGGAG 1 cut(s) 366
HapII CCGG 1 cut(s) 435
Hin1II CATG 2 cut(s) 599, 613
HinfI GANTC 4 cut(s) 90, 125, 377, 562
HpaII CCGG 1 cut(s) 435
Hpy166II GTNNAC 3 cut(s) 312, 478, 624
Hpy188I TCNGA 4 cut(s) 124, 195, 207, 561
Hpy188III TCNNGA 4 cut(s) 94, 345, 566, 596
Hpy8I GTNNAC 3 cut(s) 312, 478, 624
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 79, 270
HpyCH4III ACNGT 3 cut(s) 112, 118, 621
HpyCH4V TGCA 2 cut(s) 141, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpyF3I CTNAG 3 cut(s) 102, 204, 558
Hsp92II CATG 2 cut(s) 599, 613
KpnI GGTACC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 98, 580
LmnI GCTCC 2 cut(s) 262, 347
Lsp1109I GCAGC 4 cut(s) 324, 337, 502, 565
MaeIII GTNAC 4 cut(s) 61, 106, 112, 454
MalI GATC 2 cut(s) 100, 582
MboI GATC 2 cut(s) 98, 580
MboII GAAGA 3 cut(s) 32, 590, 627
MflI RGATCY 2 cut(s) 98, 580
MluCI AATT 2 cut(s) 271, 507
MnlI CCTC 4 cut(s) 341, 367, 567, 592
MseI TTAA 2 cut(s) 287, 628
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 2 cut(s) 307, 420
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 2 cut(s) 307, 420
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NdeII GATC 2 cut(s) 98, 580
NlaIII CATG 2 cut(s) 599, 613
NlaIV GGNNCC 1 cut(s) 394
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 106
PagI TCATGA 1 cut(s) 595
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 4 cut(s) 90, 125, 377, 562
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 4 cut(s) 339, 352, 517, 555
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 305, 418
PspEI GGTNACC 1 cut(s) 112
PspGI CCWGG 2 cut(s) 305, 418
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 2 cut(s) 98, 580
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
SaqAI TTAA 2 cut(s) 287, 628
SatI GCNGC 4 cut(s) 338, 351, 516, 554
Sau3AI GATC 2 cut(s) 98, 580
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 307, 420
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 2 cut(s) 271, 507
SsiI CCGC 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 305, 418
StyI CCWWGG 2 cut(s) 466, 529
TaaI ACNGT 3 cut(s) 112, 118, 621
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 271, 507
TfiI GAWTC 4 cut(s) 90, 125, 377, 562
Tru1I TTAA 2 cut(s) 287, 628
Tru9I TTAA 2 cut(s) 287, 628
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 4 cut(s) 337, 350, 515, 553
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 378, 398, 584
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.