Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009101

Physical Location & Seq

Genomic Coordinates Forward (+)

21179618 .. 21181592

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGAGAAAAGTGCTTCTGGTTTGCTGCGCTGTGGGACTCCTGGGGCTGCTATCTGCGGCTACAGGTTTCGGCGCCGAGGGCACGAGAATCAAGGGTTCTCAGGTTCAGTTTGTCTCGAATACTCAATGCGAATACCCTCGGAGTCCGGCTCTTGGACTCGGTGTAACTGCTGCAGTGGCTCTTATGTTAGCTCACATAATTATAAATGTTTCAACCGGGTGCATTTGTTGCAAAAGGAGCCCGCATCCTTCCAACTCTAACTGGACGGTAGCTCTGTTCTGCTTTGTTTTTTCCTGGTTCACATTTGTTATAGCGTTTCTTCTGCTGCTCACCGGTGCTGCACTCAATGACCGACATGGTGTAGAAAGCATGTACTTTGGCAACTACTACTGTTACGTTGTGAAACCGGGAGTGTTTGCCGGAGGTGCCCTTTTGTCATTTGCATGTGTGGTACTCGGAATTGTCTACTACGTAATCTTAAATTCAGCAAAGAACGGTGATACATCATGGGGCGGTTCTGCGCCAACTCAAGGGACAATAGCTATGGGGCAACAACTCCAGATCCCACCGCAGAGTACTACGACCCAAGAACCAGTATTTGTCCATGAAGATACGTATATGAGACGGCAATTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

214

Amino Acids

22.91

Weight (kDa)

8.38

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17210 AT5G17210
fragaria_vesca	FvH4_7g33561 FvH4_7g33561
malus_domestica	MD01G1233300.v1.1 MD07G1305500.v1.1
prunus_persica	Prupe.2G323600_v2.0.a1 Prupe.2G323600_v2.0.a1
pyrus_communis	pycom01g24160 pycom07g27880
rosa_chinensis	RchiOBHm_Chr1g0383821
rosa_laevigata	RLG00000026094
rosa_multiflora	Rmu_co8122260.1_g000001 Rmu_sc0012471.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277210
rosa_rugosa	Rorug01G0442400 Rorug01G0442400
rosa_samantha	Rh1AG468200 Rh1BG425900 Rh1CG438600 Rh1DG458700
rosa_wichuraiana	Rw1G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	74, 428
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	4 cut(s)	59, 245, 516, 572
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	3 cut(s)	377, 456, 580
AfiI	CCNNNNNNNGG	2 cut(s)	155, 533
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	42, 296
AluBI	AGCT	3 cut(s)	194, 275, 545
AluI	AGCT	3 cut(s)	194, 275, 545
Alw26I	GTCTC	2 cut(s)	121, 619
AlwI	GGATC	1 cut(s)	559
ApeKI	GCWGC	5 cut(s)	27, 49, 173, 328, 341
ApoI	RAATTY	1 cut(s)	484
AsiGI	ACCGGT	1 cut(s)	335
AspLEI	GCGC	3 cut(s)	32, 77, 526
AsuC2I	CCSGG	2 cut(s)	220, 411
AsuHPI	GGTGA	2 cut(s)	325, 512
BaeGI	GKGCMC	2 cut(s)	86, 433
BanI	GGYRCC	2 cut(s)	74, 428
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	5 cut(s)	14, 36, 160, 315, 328
BciT130I	CCWGG	2 cut(s)	44, 298
BcnI	CCSGG	2 cut(s)	220, 411
BcoDI	GTCTC	2 cut(s)	121, 619
BfmI	CTRYAG	2 cut(s)	63, 174
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	6 cut(s)	28, 50, 60, 174, 329, 342
BlsI	GCNGC	6 cut(s)	29, 51, 61, 175, 330, 343
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	4 cut(s)	44, 220, 298, 411
BmiI	GGNNCC	3 cut(s)	76, 242, 430
BmrFI	CCNGG	4 cut(s)	44, 220, 298, 411
BmsI	GCATC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	516
BpuMI	CCSGG	2 cut(s)	220, 411
BsaAI	YACGTR	2 cut(s)	475, 618
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	43, 78, 140
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 533
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	269, 596
BseBI	CCWGG	2 cut(s)	44, 298
BseDI	CCNNGG	3 cut(s)	43, 78, 140
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	155, 533
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	269, 596
BseSI	GKGCMC	2 cut(s)	86, 433
BseXI	GCAGC	5 cut(s)	14, 36, 160, 315, 328
BsgI	GTGCAG	1 cut(s)	327
BshNI	GGYRCC	2 cut(s)	74, 428
BshTI	ACCGGT	1 cut(s)	335
BsiSI	CCGG	5 cut(s)	149, 219, 336, 410, 423
BslFI	GGGAC	2 cut(s)	51, 550
BslI	CCNNNNNNNGG	2 cut(s)	155, 533
BsmAI	GTCTC	2 cut(s)	121, 619
BsmBI	CGTCTC	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	51, 550
Bsp1286I	GDGCHC	3 cut(s)	86, 245, 433
Bsp143I	GATC	1 cut(s)	564
BspACI	CCGC	4 cut(s)	59, 245, 516, 572
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	76, 242, 430
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	2 cut(s)	74, 428
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	269, 596
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	43, 78, 140
BssMI	GATC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	44, 298
Bst4CI	ACNGT	3 cut(s)	271, 395, 500
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstBAI	YACGTR	2 cut(s)	475, 618
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	3 cut(s)	32, 77, 526
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	2 cut(s)	121, 619
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 179, 231, 240, 428
BstNI	CCWGG	2 cut(s)	44, 298
BstNSI	RCATGY	2 cut(s)	376, 450
BstSCI	CCNGG	4 cut(s)	42, 218, 296, 409
BstSFI	CTRYAG	2 cut(s)	63, 174
BstSLI	GKGCMC	2 cut(s)	86, 433
BstSNI	TACGTA	2 cut(s)	475, 618
BstV1I	GCAGC	5 cut(s)	14, 36, 160, 315, 328
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	3 cut(s)	32, 77, 526
Cfr10I	RCCGGY	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	376, 455, 579
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	6 cut(s)	359, 373, 447, 510, 608, 639
CviJI	RGCY	8 cut(s)	49, 62, 152, 182, 194, 243, 275, 545
CviKI_1	RGCY	8 cut(s)	49, 62, 152, 182, 194, 243, 275, 545
CviQI	GTAC	3 cut(s)	376, 455, 579
DdeI	CTNAG	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
Eco105I	TACGTA	2 cut(s)	475, 618
Eco24I	GRGCYC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	42, 296
EcoT38I	GRGCYC	1 cut(s)	245
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	6 cut(s)	362, 376, 450, 513, 611, 642
FaqI	GGGAC	2 cut(s)	51, 550
FatI	CATG	6 cut(s)	358, 372, 446, 509, 607, 638
FauI	CCCGC	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	6 cut(s)	28, 50, 60, 174, 329, 342
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	6 cut(s)	28, 50, 60, 174, 329, 342
GlaI	GCGC	3 cut(s)	31, 76, 525
GluI	GCNGC	6 cut(s)	28, 50, 60, 174, 329, 342
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	78
HapII	CCGG	5 cut(s)	149, 219, 336, 410, 423
HhaI	GCGC	3 cut(s)	32, 77, 526
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	6 cut(s)	362, 376, 450, 513, 611, 642
Hin6I	GCGC	3 cut(s)	30, 75, 524
HinP1I	GCGC	3 cut(s)	30, 75, 524
HinfI	GANTC	4 cut(s)	39, 90, 145, 159
HpaII	CCGG	5 cut(s)	149, 219, 336, 410, 423
HphI	GGTGA	2 cut(s)	325, 512
Hpy166II	GTNNAC	2 cut(s)	303, 469
Hpy188I	TCNGA	2 cut(s)	144, 461
Hpy188III	TCNNGA	2 cut(s)	118, 562
Hpy8I	GTNNAC	2 cut(s)	303, 469
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	3 cut(s)	271, 395, 500
HpyCH4IV	ACGT	3 cut(s)	399, 474, 617
HpyCH4V	TGCA	5 cut(s)	176, 225, 234, 344, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 179, 231, 240, 428
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	3 cut(s)	399, 474, 617
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	6 cut(s)	362, 376, 450, 513, 611, 642
HspAI	GCGC	3 cut(s)	30, 75, 524
KasI	GGCGCC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	5 cut(s)	14, 36, 160, 315, 328
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	3 cut(s)	399, 474, 617
MaeIII	GTNAC	2 cut(s)	166, 395
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	2 cut(s)	314, 623
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	3 cut(s)	86, 245, 433
MluCI	AATT	4 cut(s)	201, 462, 484, 632
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	3 cut(s)	33, 153, 154
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	73, 150, 419
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	445
MspI	CCGG	5 cut(s)	149, 219, 336, 410, 423
MspR9I	CCNGG	4 cut(s)	44, 220, 298, 411
MvaI	CCWGG	2 cut(s)	44, 298
MwoI	GCNNNNNNNGC	5 cut(s)	81, 179, 231, 240, 428
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	2 cut(s)	220, 411
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	6 cut(s)	362, 376, 450, 513, 611, 642
NlaIV	GGNNCC	3 cut(s)	76, 242, 430
NmeAIII	GCCGAG	1 cut(s)	103
NspI	RCATGY	2 cut(s)	376, 450
PfeI	GAWTC	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	6 cut(s)	29, 51, 61, 175, 330, 343
PleI	GAGTC	3 cut(s)	33, 153, 153
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	3 cut(s)	33, 153, 153
Ppu21I	YACGTR	2 cut(s)	475, 618
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	42, 296
PspGI	CCWGG	2 cut(s)	42, 296
PspN4I	GGNNCC	3 cut(s)	76, 242, 430
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	3 cut(s)	377, 456, 580
RsaNI	GTAC	3 cut(s)	376, 455, 579
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	6 cut(s)	28, 50, 60, 174, 329, 342
Sau3AI	GATC	1 cut(s)	564
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	3 cut(s)	33, 153, 154
ScrFI	CCNGG	4 cut(s)	44, 220, 298, 411
SduI	GDGCHC	3 cut(s)	86, 245, 433
SetI	ASST	9 cut(s)	70, 108, 196, 277, 402, 430, 477, 547, 620
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	2 cut(s)	63, 174
SfoI	GGCGCC	1 cut(s)	76
SgrAI	CRCCGGYG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
SnaBI	TACGTA	2 cut(s)	475, 618
Sse9I	AATT	4 cut(s)	201, 462, 484, 632
SsiI	CCGC	4 cut(s)	59, 245, 516, 572
SspDI	GGCGCC	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	42, 218, 296, 409
TaaI	ACNGT	3 cut(s)	271, 395, 500
TaiI	ACGT	3 cut(s)	402, 477, 620
TaqI	TCGA	1 cut(s)	119
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	201, 462, 484, 632
TatI	WGTACW	2 cut(s)	375, 578
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	5 cut(s)	27, 49, 173, 328, 341
TspDTI	ATGAA	1 cut(s)	624
TspRI	CASTG	1 cut(s)	183
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	2 cut(s)	376, 450
XmiI	GTMKAC	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.