Rh1CG438600

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009101
Physical Location & Seq
Forward (+)
69276013 .. 69277907
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG438600.1

Sequence Viewer

Length: 633 bp
ATGGAGAAAAAGGTGCTTCTGGTTTGCTGTGTGGCGGGACTGTTGGGGCTGTTGTCGGCTGCTACAGGATTTGGTGCTGAGGCAACAAGAATCAAGGGTTCTCAGGTTCAGTTTGTCAATGCTAGTCAATGTGAATATCCTCGGACTCCAGCTCTTGGTCTTGGTTTTACTGCCGCAGTGGCTCTTATGGTAGCTCATATCATTATAAATGTTTCAACAGGATGCATTTGTTGCAAGAGGATCCCCCGACCTTCCAATTCTAACTGGACGATTACCCTCATCTGCTTTGTTGTTTCCTGGTTCTCGTTTGTAATAGCATTTCTTCTGTTGCTCACTGGTTCTGCACTCAACGATCGACATGGTGTAGAAAGCATGTACTTTGGCAGCTACTACTGTTATGTCGTGAAGCCTGGAGTGTTTGCTGGAGGTGCTGTCTTATCCCTTGCAAGTGTGACCCTAGGAATTTTCTACTACATCACCTTAAATTCAGCCAAGAACAACAACAATCTGTGTGGTAATGGTGTTCAGGGGCCAGCAATAGCTATGGGGCAACCCCAGTTTCCAGCGCAGAATAATACTCAAGACCCTGTCTTTGTCCATGAAGACACTTATATGAGACGGCAATTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

210

Amino Acids

22.61

Weight (kDa)

8.76

Isoelectric Point (pI)

25.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 58 - 151 7.8e-29 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 2 cut(s) 35, 174
AclWI GGATC 2 cut(s) 235, 248
AcsI RAATTY 2 cut(s) 462, 484
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 216
AjnI CCWGG 2 cut(s) 296, 409
AluBI AGCT 4 cut(s) 152, 194, 387, 542
AluI AGCT 4 cut(s) 152, 194, 387, 542
Alw26I GTCTC 1 cut(s) 610
AlwI GGATC 2 cut(s) 235, 248
AoxI GGCC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 59, 384
ApoI RAATTY 2 cut(s) 462, 484
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 469
AvrII CCTAGG 1 cut(s) 457
BamHI GGATCC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 609
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 46, 396
BciT130I CCWGG 2 cut(s) 298, 411
BcoDI GTCTC 1 cut(s) 610
BfaI CTAG 2 cut(s) 123, 458
BfmI CTRYAG 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 60, 174, 385
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 3 cut(s) 61, 175, 386
Bme1390I CCNGG 2 cut(s) 298, 411
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 2 cut(s) 242, 531
BmrFI CCNGG 2 cut(s) 298, 411
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 3 cut(s) 132, 432, 444
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 140, 457
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 269, 340, 556
BseBI CCWGG 2 cut(s) 298, 411
BseDI CCNNGG 2 cut(s) 140, 457
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 69, 116
BseNI ACTGG 3 cut(s) 269, 340, 556
BseXI GCAGC 2 cut(s) 46, 396
BsgI GTGCAG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 610
BsmBI CGTCTC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 1 cut(s) 532
Bsp143I GATC 2 cut(s) 240, 352
BspACI CCGC 2 cut(s) 35, 174
BspANI GGCC 1 cut(s) 532
BspCNI CTCAG 2 cut(s) 70, 115
BspLI GGNNCC 2 cut(s) 242, 531
BspPI GGATC 2 cut(s) 235, 248
BsrI ACTGG 3 cut(s) 269, 340, 556
BssECI CCNNGG 2 cut(s) 140, 457
BssMI GATC 2 cut(s) 240, 352
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 2 cut(s) 298, 411
Bst4CI ACNGT 2 cut(s) 42, 395
BstAPI GCANNNNNTGC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 78, 102
BstF5I GGATG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 2 cut(s) 243, 355
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 2 cut(s) 240, 352
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 3 cut(s) 179, 231, 428
BstNI CCWGG 2 cut(s) 298, 411
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 296, 409
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 46, 396
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 532
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 333
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 1 cut(s) 568
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 376
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 4 cut(s) 359, 373, 599, 630
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 78, 102
DpnI GATC 2 cut(s) 242, 354
DpnII GATC 2 cut(s) 240, 352
Eco130I CCWWGG 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 296, 409
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 610
FaeI CATG 4 cut(s) 362, 376, 602, 633
FaqI GGGAC 1 cut(s) 51
FatI CATG 4 cut(s) 358, 372, 598, 629
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 60, 174, 385
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 60, 174, 385
FspBI CTAG 2 cut(s) 123, 458
GlaI GCGC 1 cut(s) 567
GluI GCNGC 3 cut(s) 60, 174, 385
GsuI CTGGAG 3 cut(s) 132, 432, 444
HaeIII GGCC 1 cut(s) 532
HhaI GCGC 1 cut(s) 568
Hin1II CATG 4 cut(s) 362, 376, 602, 633
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HinfI GANTC 2 cut(s) 90, 145
HphI GGTGA 1 cut(s) 469
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 403, 581
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 42, 395
HpyCH4V TGCA 4 cut(s) 225, 234, 344, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 231, 428
HpyF3I CTNAG 2 cut(s) 78, 102
Hsp92II CATG 4 cut(s) 362, 376, 602, 633
HspAI GCGC 1 cut(s) 566
Kzo9I GATC 2 cut(s) 240, 352
Lsp1109I GCAGC 2 cut(s) 46, 396
LweI GCATC 1 cut(s) 212
MaeI CTAG 2 cut(s) 123, 458
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 242, 354
MboI GATC 2 cut(s) 240, 352
MboII GAAGA 2 cut(s) 314, 614
MflI RGATCY 1 cut(s) 240
MluCI AATT 4 cut(s) 256, 462, 484, 623
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 5 cut(s) 73, 150, 231, 287, 419
Mph1103I ATGCAT 1 cut(s) 227
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 611
MspR9I CCNGG 2 cut(s) 298, 411
MvaI CCWGG 2 cut(s) 298, 411
MwoI GCNNNNNNNGC 3 cut(s) 179, 231, 428
NdeII GATC 2 cut(s) 240, 352
NlaIII CATG 4 cut(s) 362, 376, 602, 633
NlaIV GGNNCC 2 cut(s) 242, 531
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 1 cut(s) 376
PfeI GAWTC 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 3 cut(s) 61, 175, 386
Ple19I CGATCG 1 cut(s) 355
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PsiI TTATAA 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 296, 409
PspGI CCWGG 2 cut(s) 296, 409
PspN4I GGNNCC 2 cut(s) 242, 531
PspPI GGNCC 1 cut(s) 530
PsuI RGATCY 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 587
PvuI CGATCG 1 cut(s) 355
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 3 cut(s) 60, 174, 385
Sau3AI GATC 2 cut(s) 240, 352
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 298, 411
SetI ASST 9 cut(s) 15, 108, 154, 196, 253, 389, 430, 482, 544
SfaNI GCATC 1 cut(s) 212
SfcI CTRYAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 4 cut(s) 256, 462, 484, 623
SsiI CCGC 2 cut(s) 35, 174
SspMI CTAG 2 cut(s) 123, 458
StyD4I CCNGG 2 cut(s) 296, 409
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 42, 395
TaqI TCGA 1 cut(s) 355
TasI AATT 4 cut(s) 256, 462, 484, 623
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 2 cut(s) 183, 340
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 59, 384
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 615
TspRI CASTG 2 cut(s) 183, 340
Tth111I GACNNNGTC 1 cut(s) 587
Van91I CCANNNNNTGG 1 cut(s) 155
XapI RAATTY 2 cut(s) 462, 484
XceI RCATGY 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 457
XspI CTAG 2 cut(s) 123, 458
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.