Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009101

Physical Location & Seq

Genomic Coordinates Forward (+)

27417634 .. 27419720

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGAGAAAAGTACTTCTGGTTTGCTGCGCGGTGGGACTACTGGGGCTGCTATCTGCCGCCACAGGTTTCGGCGCCGAGGGCACGAGAATCAAGGGGTCTCAGGTTCGGTTTGTCTCAACTCTTCAATGTGAATACCCTCGGAGTCCGGCTCTTGGACTTGGTGTAACTGCTGCAATGGCTCTTATGTTAGCTCAAATCATTATAAATGTATTTTCTGGGTGCATTTGTTGCAAAAGGAGCCCTCAGCCTTCCAACTCTAACTGGACAGTAGCACTGTTCTGCTTTGTTCTTTCCTGGTTCACATTTGTTATAGCGTTTCTTCTGCTGCTCACTGGTGCCGCACTCAATGACAGACATGGTGTAGAAAGCATGTACTTTGGCAACTACTACTGTTACGTTGTGAAACCCGGAGTGTTTGCCGGAGGTGCCCTTCTGTCAATTGCAAGTGTGGCACTCGGAATTGTCTACTATGTCACCTTAAATTCAGCAAAGAACAGTGATCCTTCATGGGCTGGTTCCACTCCTAATCAAGGGGCAATAGCTATGGGGCAACCCCAGATGCCACCGCAGAGTACTACCACCCAAGAACCAGTATTCGTCCATGAAGACACGTACATGAGGCGGCAGTTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

213

Amino Acids

22.8

Weight (kDa)

8.65

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17210 AT5G17210
fragaria_vesca	FvH4_7g33561 FvH4_7g33561
malus_domestica	MD01G1233300.v1.1 MD07G1305500.v1.1
prunus_persica	Prupe.2G323600_v2.0.a1 Prupe.2G323600_v2.0.a1
pyrus_communis	pycom01g24160 pycom07g27880
rosa_chinensis	RchiOBHm_Chr1g0383821
rosa_laevigata	RLG00000026094
rosa_multiflora	Rmu_co8122260.1_g000001 Rmu_sc0012471.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277210
rosa_rugosa	Rorug01G0442400 Rorug01G0442400
rosa_samantha	Rh1AG468200 Rh1BG425900 Rh1CG438600 Rh1DG458700
rosa_wichuraiana	Rw1G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccB1I	GGYRCC	3 cut(s)	74, 338, 428
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	32, 60, 342, 569, 625
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	4 cut(s)	15, 377, 577, 617
AfiI	CCNNNNNNNGG	2 cut(s)	155, 533
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	2 cut(s)	194, 545
AluI	AGCT	2 cut(s)	194, 545
Alw26I	GTCTC	2 cut(s)	105, 121
AlwI	GGATC	1 cut(s)	497
ApeKI	GCWGC	4 cut(s)	27, 49, 173, 328
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	2 cut(s)	32, 77
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	469
BaeGI	GKGCMC	2 cut(s)	86, 433
BanI	GGYRCC	3 cut(s)	74, 338, 428
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	14, 36, 160, 315
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	105, 121
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	7 cut(s)	28, 50, 60, 174, 329, 342, 626
BlsI	GCNGC	7 cut(s)	29, 51, 61, 175, 330, 343, 627
BmcAI	AGTACT	2 cut(s)	15, 577
Bme1390I	CCNGG	2 cut(s)	298, 411
BmiI	GGNNCC	5 cut(s)	76, 242, 340, 430, 520
BmrFI	CCNGG	2 cut(s)	298, 411
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	78, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 533
Bse1I	ACTGG	4 cut(s)	48, 269, 340, 593
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	78, 140
BseLI	CCNNNNNNNGG	2 cut(s)	155, 533
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	116, 260
BseNI	ACTGG	4 cut(s)	48, 269, 340, 593
BseSI	GKGCMC	2 cut(s)	86, 433
BseXI	GCAGC	4 cut(s)	14, 36, 160, 315
Bsh1236I	CGCG	1 cut(s)	32
BshNI	GGYRCC	3 cut(s)	74, 338, 428
BsiSI	CCGG	3 cut(s)	149, 411, 423
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	155, 533
BsmAI	GTCTC	2 cut(s)	105, 121
BsmFI	GGGAC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	105
Bsp1286I	GDGCHC	3 cut(s)	86, 245, 433
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	5 cut(s)	32, 60, 342, 569, 625
BspCNI	CTCAG	2 cut(s)	115, 259
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	5 cut(s)	76, 242, 340, 430, 520
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	3 cut(s)	74, 338, 428
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	4 cut(s)	48, 269, 340, 593
BssECI	CCNNGG	2 cut(s)	78, 140
BssMI	GATC	1 cut(s)	502
BssNI	GRCGYC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	4 cut(s)	271, 279, 395, 500
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	615
BstDEI	CTNAG	2 cut(s)	102, 246
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	32, 77
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	2 cut(s)	105, 121
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 179, 231, 240, 428, 452
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	296, 409
BstSLI	GKGCMC	2 cut(s)	86, 433
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	14, 36, 160, 315
BstV2I	GAAGAC	1 cut(s)	615
BtsIMutI	CAGTG	3 cut(s)	275, 333, 505
CfoI	GCGC	2 cut(s)	32, 77
Csp6I	GTAC	4 cut(s)	14, 376, 576, 616
CviAII	CATG	6 cut(s)	359, 373, 510, 605, 619, 636
CviJI	RGCY	8 cut(s)	49, 152, 182, 194, 243, 250, 515, 545
CviKI_1	RGCY	8 cut(s)	49, 152, 182, 194, 243, 250, 515, 545
CviQI	GTAC	4 cut(s)	14, 376, 576, 616
DdeI	CTNAG	2 cut(s)	102, 246
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	245
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
FaeI	CATG	6 cut(s)	362, 376, 513, 608, 622, 639
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	6 cut(s)	358, 372, 509, 604, 618, 635
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	7 cut(s)	28, 50, 60, 174, 329, 342, 626
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	7 cut(s)	28, 50, 60, 174, 329, 342, 626
GlaI	GCGC	2 cut(s)	31, 76
GluI	GCNGC	7 cut(s)	28, 50, 60, 174, 329, 342, 626
HaeII	RGCGCY	1 cut(s)	78
HapII	CCGG	3 cut(s)	149, 411, 423
HhaI	GCGC	2 cut(s)	32, 77
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	6 cut(s)	362, 376, 513, 608, 622, 639
Hin6I	GCGC	2 cut(s)	30, 75
HinP1I	GCGC	2 cut(s)	30, 75
HinfI	GANTC	2 cut(s)	90, 145
HpaII	CCGG	3 cut(s)	149, 411, 423
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	303, 469, 633
Hpy188I	TCNGA	2 cut(s)	144, 461
Hpy8I	GTNNAC	3 cut(s)	303, 469, 633
HpyAV	CCTTC	3 cut(s)	261, 443, 516
HpyCH4III	ACNGT	4 cut(s)	271, 279, 395, 500
HpyCH4IV	ACGT	2 cut(s)	399, 614
HpyCH4V	TGCA	4 cut(s)	176, 225, 234, 446
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 179, 231, 240, 428, 452
HpyF3I	CTNAG	2 cut(s)	102, 246
HpySE526I	ACGT	2 cut(s)	399, 614
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	6 cut(s)	362, 376, 513, 608, 622, 639
HspAI	GCGC	2 cut(s)	30, 75
KasI	GGCGCC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	4 cut(s)	14, 36, 160, 315
LweI	GCATC	1 cut(s)	552
MaeII	ACGT	2 cut(s)	399, 614
MaeIII	GTNAC	3 cut(s)	166, 395, 475
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	3 cut(s)	116, 314, 620
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	3 cut(s)	86, 245, 433
MluCI	AATT	3 cut(s)	441, 462, 484
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	5 cut(s)	73, 150, 255, 419, 615
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	617
MspI	CCGG	3 cut(s)	149, 411, 423
MspR9I	CCNGG	2 cut(s)	298, 411
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	6 cut(s)	81, 179, 231, 240, 428, 452
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	6 cut(s)	362, 376, 513, 608, 622, 639
NlaIV	GGNNCC	5 cut(s)	76, 242, 340, 430, 520
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	7 cut(s)	29, 51, 61, 175, 330, 343, 627
PleI	GAGTC	1 cut(s)	153
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	5 cut(s)	76, 242, 340, 430, 520
RsaI	GTAC	4 cut(s)	15, 377, 577, 617
RsaNI	GTAC	4 cut(s)	14, 376, 576, 616
RseI	CAYNNNNRTG	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	7 cut(s)	28, 50, 60, 174, 329, 342, 626
Sau3AI	GATC	1 cut(s)	502
ScaI	AGTACT	2 cut(s)	15, 577
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	298, 411
SduI	GDGCHC	3 cut(s)	86, 245, 433
SetI	ASST	8 cut(s)	70, 108, 196, 402, 430, 482, 547, 617
SfaNI	GCATC	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	3 cut(s)	441, 462, 484
SsiI	CCGC	5 cut(s)	32, 60, 342, 569, 625
SspDI	GGCGCC	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	296, 409
TaaI	ACNGT	4 cut(s)	271, 279, 395, 500
TaiI	ACGT	2 cut(s)	402, 617
TasI	AATT	3 cut(s)	441, 462, 484
TatI	WGTACW	3 cut(s)	13, 375, 575
TauI	GCSGC	3 cut(s)	62, 344, 628
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	3 cut(s)	282, 340, 505
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	4 cut(s)	27, 49, 173, 328
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	498, 621
TspRI	CASTG	3 cut(s)	282, 340, 505
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	468
ZrmI	AGTACT	2 cut(s)	15, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.