Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012471.1

Orthogroup ID

OG0009101

Physical Location & Seq

Genomic Coordinates Reverse (-)

31809 .. 33712

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012471.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggagaaaaaggtgcttctggtttgctgtgtggcgggactgttggggctgttgtcggctgctacaggatttggtgctgaggcaacaagaatcaagggttctcaggttcagtttgtcaatgctagtcaatgtgaatatcctcggactgcagctcttggtcttggttttactgccgcagtggctcttatggtagctcatataattataaatgtttcaacaggatgcatttgttgcaagaggatcccccgaccttccaattctaactggacgattgcccttatctgctttgttgtttcctggttctcgtttgtaatagcatttcttctgttgctcactggttctgcactcaatgatcgacatggtgtagaaagcatgtactttggcagctactactgttatgttgtgaagcctggagtgtttgctggtggtgctgtcttatcccttgcaagtgtgaccctaggaattttctactacatcaccttaaattcagcaaagaacaacgacaatctgtgtggtaatgctgttcaggggccagcaatagcaatggggcaaccccagtttccagcgcagaataatactcaagaccctgtctttgtccatgaagacacttacatgagacggcaattcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

210

Amino Acids

22.57

Weight (kDa)

8.59

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17210 AT5G17210
fragaria_vesca	FvH4_7g33561 FvH4_7g33561
malus_domestica	MD01G1233300.v1.1 MD07G1305500.v1.1
prunus_persica	Prupe.2G323600_v2.0.a1 Prupe.2G323600_v2.0.a1
pyrus_communis	pycom01g24160 pycom07g27880
rosa_chinensis	RchiOBHm_Chr1g0383821
rosa_laevigata	RLG00000026094
rosa_multiflora	Rmu_co8122260.1_g000001 Rmu_sc0012471.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277210
rosa_rugosa	Rorug01G0442400 Rorug01G0442400
rosa_samantha	Rh1AG468200 Rh1BG425900 Rh1CG438600 Rh1DG458700
rosa_wichuraiana	Rw1G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AciI	CCGC	2 cut(s)	35, 174
AclWI	GGATC	2 cut(s)	235, 248
AcsI	RAATTY	2 cut(s)	462, 484
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	296, 409
AluBI	AGCT	3 cut(s)	152, 194, 387
AluI	AGCT	3 cut(s)	152, 194, 387
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	2 cut(s)	235, 248
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	59, 149, 384
ApoI	RAATTY	2 cut(s)	462, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspA2I	CCTAGG	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	46, 161, 396
BciT130I	CCWGG	2 cut(s)	298, 411
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	2 cut(s)	123, 458
BfmI	CTRYAG	2 cut(s)	63, 147
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	60, 150, 174, 385
BlnI	CCTAGG	1 cut(s)	457
BlsI	GCNGC	4 cut(s)	61, 151, 175, 386
Bme1390I	CCNGG	2 cut(s)	298, 411
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	242, 531
BmrFI	CCNGG	2 cut(s)	298, 411
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	140, 457
Bse1I	ACTGG	3 cut(s)	269, 340, 556
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	298, 411
BseDI	CCNNGG	2 cut(s)	140, 457
BseGI	GGATG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	69, 116
BseNI	ACTGG	3 cut(s)	269, 340, 556
BseXI	GCAGC	3 cut(s)	46, 161, 396
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	610
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	240, 352
BspACI	CCGC	2 cut(s)	35, 174
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	2 cut(s)	70, 115
BspLI	GGNNCC	2 cut(s)	242, 531
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	2 cut(s)	235, 248
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	269, 340, 556
BssECI	CCNNGG	2 cut(s)	140, 457
BssMI	GATC	2 cut(s)	240, 352
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	2 cut(s)	298, 411
Bst4CI	ACNGT	2 cut(s)	42, 395
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	78, 102
BstF5I	GGATG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	243, 355
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	2 cut(s)	240, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 231, 428
BstNI	CCWGG	2 cut(s)	298, 411
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	296, 409
BstSFI	CTRYAG	2 cut(s)	63, 147
BstV1I	GCAGC	3 cut(s)	46, 161, 396
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 333
Cac8I	GCNNGC	1 cut(s)	534
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	5 cut(s)	359, 373, 599, 613, 630
CviJI	RGCY	8 cut(s)	49, 59, 152, 182, 194, 387, 409, 532
CviKI_1	RGCY	8 cut(s)	49, 59, 152, 182, 194, 387, 409, 532
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	78, 102
DpnI	GATC	2 cut(s)	242, 354
DpnII	GATC	2 cut(s)	240, 352
Eco130I	CCWWGG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	296, 409
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	5 cut(s)	362, 376, 602, 616, 633
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	5 cut(s)	358, 372, 598, 612, 629
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	60, 150, 174, 385
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	60, 150, 174, 385
FspBI	CTAG	2 cut(s)	123, 458
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	4 cut(s)	60, 150, 174, 385
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	532
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	5 cut(s)	362, 376, 602, 616, 633
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HinfI	GANTC	1 cut(s)	90
HphI	GGTGA	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	42, 395
HpyCH4V	TGCA	5 cut(s)	149, 225, 234, 344, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 231, 428
HpyF3I	CTNAG	2 cut(s)	78, 102
Hsp92II	CATG	5 cut(s)	362, 376, 602, 616, 633
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	2 cut(s)	240, 352
Lsp1109I	GCAGC	3 cut(s)	46, 161, 396
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	123, 458
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	2 cut(s)	242, 354
MboI	GATC	2 cut(s)	240, 352
MboII	GAAGA	2 cut(s)	314, 614
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	5 cut(s)	201, 256, 462, 484, 623
MnlI	CCTC	3 cut(s)	73, 150, 231
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	298, 411
MvaI	CCWGG	2 cut(s)	298, 411
MwoI	GCNNNNNNNGC	3 cut(s)	179, 231, 428
NdeII	GATC	2 cut(s)	240, 352
NlaIII	CATG	5 cut(s)	362, 376, 602, 616, 633
NlaIV	GGNNCC	2 cut(s)	242, 531
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	61, 151, 175, 386
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	296, 409
PspGI	CCWGG	2 cut(s)	296, 409
PspN4I	GGNNCC	2 cut(s)	242, 531
PspPI	GGNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	240
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	4 cut(s)	60, 150, 174, 385
Sau3AI	GATC	2 cut(s)	240, 352
Sau96I	GGNCC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	298, 411
SetI	ASST	7 cut(s)	15, 108, 154, 196, 253, 389, 482
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	2 cut(s)	63, 147
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	5 cut(s)	201, 256, 462, 484, 623
SsiI	CCGC	2 cut(s)	35, 174
SspMI	CTAG	2 cut(s)	123, 458
StyD4I	CCNGG	2 cut(s)	296, 409
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	42, 395
TaqI	TCGA	1 cut(s)	355
TasI	AATT	5 cut(s)	201, 256, 462, 484, 623
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	2 cut(s)	183, 340
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	3 cut(s)	59, 149, 384
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	615
TspRI	CASTG	2 cut(s)	183, 340
Tth111I	GACNNNGTC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	462, 484
XceI	RCATGY	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	457
XspI	CTAG	2 cut(s)	123, 458
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.