Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Forward (+)

5658416 .. 5659661

Gene Structure 1246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTTGTGAAACTATATGGACAGGTAACAGCAGCTTGTCCACAAAGAGTCTTGCTTTGTTTTCTCGAGAAAGGAATTGAATTTGAGATTATTCATATCGATCTTGATACATTTGAGCAAAAAAAACCAGAACATCTTCTTCGTCAGCCATTTGGTCAAGTTCCAGCCATAGAAGATGGAGATTTCAAGCTTTTTGAATCACGAGCCATCGCGAGATACTACGCTACCAAGTTCGCGGACCAAGGCACGAACCTTTTGGGCAAGTCTCTAGAGCACCGAGCCATCGTGGACCAGTGGGCTGACGTGGAGACCTATTACTTCAACGTTCTGGCCCAACCCCTCGTGATTAACCTAATCATCAAGCCTAGGTTAGGCGAGAAATGTGACGTCGTTTTGGTCGAGGATCTCAAAGTGAAGCTAGGAGTGGTCTTGGACATATACAATAACCGGCTTTCTTCGAACCGGTTTTTGGCTGGTGAAGAATTCACTATGGCTGATTTGACGCACATGCCGGCGATGGGGTACTTGATGAGTATAACCGATATAAACCAGATGGTTAAGGCTCGGGGTAGTTTTAACCGGTGGTGGGAAGAGATTTCGGATAGACCGTCTTGGAAGAAGCTTATGGTGCTGGCTGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

214

Amino Acids

24.58

Weight (kDa)

5.98

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	4.3e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 79	3.5e-09	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 76	8.9e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	133 - 203	9.3e-09	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccII	CGCG	2 cut(s)	212, 236
AciI	CCGC	1 cut(s)	236
AclI	AACGTT	1 cut(s)	324
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	80, 482
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	4 cut(s)	371, 469, 518, 586
AgeI	ACCGGT	2 cut(s)	462, 579
AgsI	TTSAA	4 cut(s)	80, 187, 197, 322
AjiI	CACGTC	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	35, 190, 418, 622
AluI	AGCT	4 cut(s)	35, 190, 418, 622
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	270, 302
AlwI	GGATC	1 cut(s)	411
Ama87I	CYCGRG	2 cut(s)	65, 564
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	2 cut(s)	80, 482
AsiGI	ACCGGT	2 cut(s)	462, 579
Asp700I	GAANNNNTTC	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	365
AspS9I	GGNCC	3 cut(s)	238, 289, 331
AsuHPI	GGTGA	1 cut(s)	488
AsuII	TTCGAA	1 cut(s)	458
AvaI	CYCGRG	2 cut(s)	65, 564
AvaII	GGWCC	2 cut(s)	238, 289
AvrII	CCTAGG	1 cut(s)	365
BauI	CACGAG	2 cut(s)	201, 341
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	5 cut(s)	170, 215, 290, 511, 547
BcoDI	GTCTC	2 cut(s)	270, 302
BfaI	CTAG	3 cut(s)	269, 366, 419
BisI	GCNGC	1 cut(s)	33
BlnI	CCTAGG	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	2 cut(s)	238, 289
BmeT110I	CYCGRG	2 cut(s)	65, 564
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	238, 289, 331
Bpu14I	TTCGAA	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	241, 365
BsaWI	WCCGGW	2 cut(s)	462, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 469, 518, 586
Bse118I	RCCGGY	4 cut(s)	447, 462, 511, 579
Bse1I	ACTGG	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	241, 365
BseLI	CCNNNNNNNGG	4 cut(s)	371, 469, 518, 586
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	44
Bsh1236I	CGCG	2 cut(s)	212, 236
BshFI	GGCC	1 cut(s)	332
BshTI	ACCGGT	2 cut(s)	462, 579
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	2 cut(s)	65, 564
BsiSI	CCGG	4 cut(s)	448, 463, 512, 580
BslI	CCNNNNNNNGG	4 cut(s)	371, 469, 518, 586
BsmAI	GTCTC	2 cut(s)	270, 302
BsnI	GGCC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	2 cut(s)	65, 564
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	100, 403
Bsp68I	TCGCGA	1 cut(s)	212
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	332
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	212, 236
BspPI	GGATC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	302
BsrFI	RCCGGY	4 cut(s)	447, 462, 511, 579
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	4 cut(s)	447, 462, 511, 579
BssECI	CCNNGG	2 cut(s)	241, 365
BssMI	GATC	2 cut(s)	100, 403
BssNI	GRCGYC	1 cut(s)	387
BssSI	CACGAG	2 cut(s)	201, 341
BssT1I	CCWWGG	2 cut(s)	241, 365
Bst2BI	CACGAG	2 cut(s)	201, 341
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	513, 633
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstFNI	CGCG	2 cut(s)	212, 236
BstKTI	GATC	2 cut(s)	103, 406
BstMAI	GTCTC	2 cut(s)	270, 302
BstMBI	GATC	2 cut(s)	100, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	511
BstUI	CGCG	2 cut(s)	212, 236
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	332
BsuTUI	ATCGAT	1 cut(s)	99
BtgZI	GCGATG	2 cut(s)	193, 530
BtrI	CACGTC	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	299, 640
BtuMI	TCGCGA	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	513, 633
Cfr10I	RCCGGY	4 cut(s)	447, 462, 511, 579
Cfr13I	GGNCC	3 cut(s)	238, 289, 331
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	523
CspAI	ACCGGT	2 cut(s)	462, 579
CviAII	CATG	1 cut(s)	508
CviQI	GTAC	1 cut(s)	523
DpnI	GATC	2 cut(s)	102, 405
DpnII	GATC	2 cut(s)	100, 403
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	241, 365
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	238, 289
Eco88I	CYCGRG	2 cut(s)	65, 564
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	241, 365
ErhI	CCWWGG	2 cut(s)	241, 365
FaeI	CATG	1 cut(s)	511
FatI	CATG	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	269, 366, 419
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	4 cut(s)	448, 463, 512, 580
HgaI	GACGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	511
HindIII	AAGCTT	2 cut(s)	188, 620
HinfI	GANTC	2 cut(s)	48, 197
HpaII	CCGG	4 cut(s)	448, 463, 512, 580
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	41, 289
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	7 cut(s)	65, 67, 104, 201, 211, 269, 343
Hpy8I	GTNNAC	2 cut(s)	41, 289
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4IV	ACGT	3 cut(s)	303, 324, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpySE526I	ACGT	3 cut(s)	303, 324, 387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	511
KroI	GCCGGC	1 cut(s)	511
KroNI	GCCGGC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	100, 403
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	3 cut(s)	269, 366, 419
MaeII	ACGT	3 cut(s)	303, 324, 387
MaeIII	GTNAC	3 cut(s)	25, 383, 638
MalI	GATC	2 cut(s)	102, 405
MboI	GATC	2 cut(s)	100, 403
MboII	GAAGA	7 cut(s)	128, 131, 185, 447, 491, 602, 628
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	3 cut(s)	75, 80, 482
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	350, 394
MroNI	GCCGGC	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	348, 558, 576
MspI	CCGG	4 cut(s)	448, 463, 512, 580
MvnI	CGCG	2 cut(s)	212, 236
MwoI	GCNNNNNNNGC	1 cut(s)	628
NaeI	GCCGGC	1 cut(s)	513
NdeII	GATC	2 cut(s)	100, 403
NgoMIV	GCCGGC	1 cut(s)	511
NlaIII	CATG	1 cut(s)	511
NmuCI	GTSAC	2 cut(s)	383, 638
NruI	TCGCGA	1 cut(s)	212
NspI	RCATGY	1 cut(s)	511
NspV	TTCGAA	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 605
PdiI	GCCGGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	197
PinAI	ACCGGT	2 cut(s)	462, 579
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	324
PspPI	GGNCC	3 cut(s)	238, 289, 331
PsuI	RGATCY	1 cut(s)	403
RruI	TCGCGA	1 cut(s)	212
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	348, 558, 576
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	100, 403
Sau96I	GGNCC	3 cut(s)	238, 289, 331
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	2 cut(s)	238, 289
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	75, 80, 482
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	3 cut(s)	269, 366, 419
StyI	CCWWGG	2 cut(s)	241, 365
TaaI	ACNGT	1 cut(s)	609
TaiI	ACGT	3 cut(s)	306, 327, 390
TaqI	TCGA	4 cut(s)	66, 99, 399, 458
TasI	AATT	3 cut(s)	75, 80, 482
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	348, 558, 576
Tru9I	TTAA	3 cut(s)	348, 558, 576
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	383, 638
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	2 cut(s)	383, 638
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	238, 289
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	80, 482
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	3 cut(s)	269, 366, 419
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.