Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Reverse (-)

33727668 .. 33733553

Gene Structure 5886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGGCATCACAATTCTTTCTTGTTGCTTATTAATTTTTCTTTGCCCTCATTTAACTGGATGTGGGGCTCGCTCTGTTACAGAATCTAGAGCTATCGTGAGGTACTATGCAGCCAAGTACGCAGACCGTGGCCCTAACCTGTTGGGAACAACACTGGAGGAGAAGGCTCTGGTGGATCAATGGCTCGAAGTCGAATCACACAACTTCAACGACTTGGTTTATGCTGTGGTGCTTCAACTTGTGGTCCTTCCCAGCATGGGCGAAACTAGCGACTTGGCATTGGTGCGCGCTTGTGAAGAAAAACTGAAAAAGGTATTCGATGTGTATGAGGAGAGACTATCCAAGAGCACCTATCTGGCCGGAAGCTCCTTCACTTTGGCTGATCTGAGCCATCTTCCAGCGATTCGGTTTCTGATGGACGAGGTCAAAATGGGACATTTGGTCACGGAGAGGAAGAATGTGAATGCTTGGTGGGAAAAAATTTCGAACAGGCCTGCGTGGAAGAAACTCATGAAGCTTGCTCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

177

Amino Acids

20.06

Weight (kDa)

6.9

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	76 - 166	1.7e-15	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	96 - 158	7.4e-07	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	98 - 169	1.4e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	291
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	2 cut(s)	107, 122
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	211, 239
AhdI	GACNNNNNGTC	1 cut(s)	443
AluBI	AGCT	3 cut(s)	95, 369, 520
AluI	AGCT	3 cut(s)	95, 369, 520
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	3 cut(s)	133, 360, 494
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	483
AseI	ATTAAT	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	291, 293
AspS9I	GGNCC	2 cut(s)	134, 247
AsuII	TTCGAA	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	402, 412
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	3 cut(s)	90, 270, 532
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	247
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	134, 247
BmsI	GCATC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	64, 162
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	64, 162
BsePI	GCGCGC	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	176, 347
BseXI	GCAGC	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	135, 362, 496
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	135, 362, 496
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	73, 353
Bsp143I	GATC	2 cut(s)	178, 385
BspANI	GGCC	3 cut(s)	135, 362, 496
BspCNI	CTCAG	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	513
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	64, 162
BssECI	CCNNGG	1 cut(s)	130
BssHII	GCGCGC	1 cut(s)	289
BssMI	GATC	2 cut(s)	178, 385
Bst4CI	ACNGT	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	73, 291, 498, 522
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	291, 293
BstKTI	GATC	2 cut(s)	181, 388
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	178, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 270
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	135, 362, 496
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	4 cut(s)	73, 291, 498, 522
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	2 cut(s)	291, 293
Cfr13I	GGNCC	2 cut(s)	134, 247
Csp6I	GTAC	2 cut(s)	106, 121
CviAII	CATG	2 cut(s)	259, 514
CviQI	GTAC	2 cut(s)	106, 121
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	2 cut(s)	180, 387
DpnII	GATC	2 cut(s)	178, 385
DriI	GACNNNNNGTC	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	360
Eam1105I	GACNNNNNGTC	1 cut(s)	443
Eco147I	AGGCCT	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	2 cut(s)	262, 517
FaiI	YATR	5 cut(s)	111, 225, 260, 330, 515
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	258, 513
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	3 cut(s)	90, 270, 532
GlaI	GCGC	2 cut(s)	290, 292
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	135, 362, 496
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	2 cut(s)	291, 293
Hin1II	CATG	2 cut(s)	262, 517
Hin6I	GCGC	2 cut(s)	289, 291
HinP1I	GCGC	2 cut(s)	289, 291
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	86, 197, 406
HpaII	CCGG	1 cut(s)	363
Hpy188I	TCNGA	2 cut(s)	390, 417
Hpy188III	TCNNGA	3 cut(s)	90, 100, 514
HpyAV	CCTTC	3 cut(s)	160, 260, 382
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 270
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	262, 517
HspAI	GCGC	2 cut(s)	289, 291
Kzo9I	GATC	2 cut(s)	178, 385
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	3 cut(s)	90, 270, 532
MaeIII	GTNAC	2 cut(s)	79, 445
MalI	GATC	2 cut(s)	180, 387
MboI	GATC	2 cut(s)	178, 385
MboII	GAAGA	4 cut(s)	311, 389, 469, 517
MhlI	GDGCHC	2 cut(s)	73, 353
MluCI	AATT	3 cut(s)	15, 36, 483
MnlI	CCTC	6 cut(s)	60, 96, 154, 325, 418, 447
MseI	TTAA	2 cut(s)	35, 56
MspI	CCGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	472
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	122, 270
NdeII	GATC	2 cut(s)	178, 385
NlaIII	CATG	2 cut(s)	262, 517
NmuCI	GTSAC	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	513
PauI	GCGCGC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	496
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	86, 197, 406
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	134, 247
PsyI	GACNNNGTC	1 cut(s)	425
PteI	GCGCGC	1 cut(s)	289
RsaI	GTAC	2 cut(s)	107, 122
RsaNI	GTAC	2 cut(s)	106, 121
SaqAI	TTAA	2 cut(s)	35, 56
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	178, 385
Sau96I	GGNCC	2 cut(s)	134, 247
SduI	GDGCHC	2 cut(s)	73, 353
SetI	ASST	8 cut(s)	97, 107, 144, 318, 356, 371, 429, 522
SfaNI	GCATC	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	488
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	3 cut(s)	15, 36, 483
SseBI	AGGCCT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	90, 270, 532
StuI	AGGCCT	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	4 cut(s)	189, 195, 321, 488
TasI	AATT	3 cut(s)	15, 36, 483
TfiI	GAWTC	3 cut(s)	86, 197, 406
Tru1I	TTAA	2 cut(s)	35, 56
Tru9I	TTAA	2 cut(s)	35, 56
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	162
Tth111I	GACNNNGTC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	247
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	1 cut(s)	483
XbaI	TCTAGA	1 cut(s)	89
XspI	CTAG	3 cut(s)	90, 270, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.