Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Reverse (-)

957511 .. 958712

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTTGTGAAAGTGTATGGTCCAGTCAAGGCAGCCTGCCCTCAGAGGGTTATGGTTTGTCTTTTGGAGAAAGGAGTGAATTTCGAAATTGTTGATGTTAATCTTGAGGTGGGAGAGCAAAAGCAACCTCAGTTCCTCTCCCGTCAGCCGTTTGGTCAAGTTCCAGCAGTAGAAGATGGTGATTTCAGGCTATTTGAGTCTAGGGCTATTATCAGATACTACGCAGCCAAGTACGCCGACCGTGGTCCCAACCTATTGGGAACAACCCTGGAGGAGAAGGCTCTGGTGGATCAGTGGCTGGAAGTAGAAGCTCACAATTTCAATGACTTGGTTTACACTCTGGTACTTCAACTTCTGGTGCTGCCTCGCATGGGGGAGCGTGGTGACGTGGCCTTGGTCCATGCATGTGAGGAGAAACTGGAGAAGGTGTTCGATGTTTATGAGGAAAGATTATCAAAGAGCAGCTATCTGGCTGGAGAAGCTTTCACTCTGGCTGATCTGAGCCATCTTCCAGGGATAAGCTATCTGATTGATGAAGCTAAATTGGGGCATTTGGTGTCTGAGAGGAAGAATGTGAATGCTTGGTGGAAAGACATATCCAACAGGCCTGCTTGGAAGAAACTAATGAGCCTTGCTAGTGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

216

Amino Acids

24.4

Weight (kDa)

5.34

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	2 cut(s)	233, 345
AfiI	CCNNNNNNNGG	2 cut(s)	46, 371
AgsI	TTSAA	2 cut(s)	322, 350
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	267, 511
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	5 cut(s)	311, 465, 482, 522, 539
AluI	AGCT	5 cut(s)	311, 465, 482, 522, 539
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	390, 605
ApeKI	GCWGC	4 cut(s)	32, 224, 361, 462
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	20, 245, 397
AsuHPI	GGTGA	2 cut(s)	191, 395
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	20, 245, 397
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbvI	GCAGC	4 cut(s)	44, 236, 348, 474
BccI	CCATC	2 cut(s)	170, 513
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	269, 513
BfaI	CTAG	3 cut(s)	201, 636, 646
BisI	GCNGC	4 cut(s)	33, 225, 362, 463
BlsI	GCNGC	4 cut(s)	34, 226, 363, 464
Bme1390I	CCNGG	2 cut(s)	269, 513
Bme18I	GGWCC	3 cut(s)	20, 245, 397
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	20, 245, 397
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	269, 513
BoxI	GACNNNNGTC	1 cut(s)	243
BpmI	CTGGAG	3 cut(s)	290, 440, 495
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	4 cut(s)	241, 267, 393, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 371
Bse1I	ACTGG	2 cut(s)	23, 423
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	269, 513
BseDI	CCNNGG	4 cut(s)	241, 267, 393, 512
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	46, 371
BseMII	CTCAG	4 cut(s)	56, 143, 491, 552
BseNI	ACTGG	2 cut(s)	23, 423
BseRI	GAGGAG	2 cut(s)	287, 425
BseXI	GCAGC	4 cut(s)	44, 236, 348, 474
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	392, 607
BsiEI	CGRYCG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	46, 371
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	392, 607
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	289, 496
BspANI	GGCC	2 cut(s)	392, 607
BspCNI	CTCAG	4 cut(s)	55, 142, 492, 553
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	23, 423
BssECI	CCNNGG	4 cut(s)	241, 267, 393, 512
BssMI	GATC	2 cut(s)	289, 496
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	269, 513
Bst4CI	ACNGT	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	37, 609
BstDEI	CTNAG	4 cut(s)	42, 129, 500, 561
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	292, 499
BstMBI	GATC	2 cut(s)	289, 496
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 479
BstNI	CCWGG	2 cut(s)	269, 513
BstNSI	RCATGY	1 cut(s)	408
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	267, 511
BstV1I	GCAGC	4 cut(s)	44, 236, 348, 474
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	392, 607
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	37, 609
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr13I	GGNCC	3 cut(s)	20, 245, 397
Csp6I	GTAC	2 cut(s)	232, 344
CviAII	CATG	3 cut(s)	370, 401, 405
CviQI	GTAC	2 cut(s)	232, 344
DdeI	CTNAG	4 cut(s)	42, 129, 500, 561
DpnI	GATC	2 cut(s)	291, 498
DpnII	GATC	2 cut(s)	289, 496
Eco130I	CCWWGG	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	20, 245, 397
EcoRII	CCWGG	2 cut(s)	267, 511
EcoT14I	CCWWGG	1 cut(s)	393
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	373, 404, 408
FaiI	YATR	7 cut(s)	18, 53, 371, 402, 406, 441, 596
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	369, 400, 404
Fnu4HI	GCNGC	4 cut(s)	33, 225, 362, 463
Fsp4HI	GCNGC	4 cut(s)	33, 225, 362, 463
FspBI	CTAG	3 cut(s)	201, 636, 646
GluI	GCNGC	4 cut(s)	33, 225, 362, 463
GsuI	CTGGAG	3 cut(s)	290, 440, 495
HaeIII	GGCC	2 cut(s)	392, 607
Hin1II	CATG	3 cut(s)	373, 404, 408
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	2 cut(s)	191, 395
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	5 cut(s)	45, 215, 501, 528, 562
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	271, 418
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 479
HpyF3I	CTNAG	4 cut(s)	42, 129, 500, 561
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	373, 404, 408
Kzo9I	GATC	2 cut(s)	289, 496
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	4 cut(s)	44, 236, 348, 474
MaeI	CTAG	3 cut(s)	201, 636, 646
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	383, 638
MalI	GATC	2 cut(s)	291, 498
MboI	GATC	2 cut(s)	289, 496
MboII	GAAGA	4 cut(s)	185, 500, 580, 628
MluCI	AATT	4 cut(s)	79, 87, 316, 542
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	624
Mph1103I	ATGCAT	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	269, 513
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	2 cut(s)	269, 513
MwoI	GCNNNNNNNGC	2 cut(s)	233, 479
NdeII	GATC	2 cut(s)	289, 496
NlaIII	CATG	3 cut(s)	373, 404, 408
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	383, 638
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	607
PctI	GAATGC	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	34, 226, 363, 464
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	267, 511
PspGI	CCWGG	2 cut(s)	267, 511
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	3 cut(s)	20, 245, 397
PstNI	CAGNNNCTG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	233, 345
RsaNI	GTAC	2 cut(s)	232, 344
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	33, 225, 362, 463
Sau3AI	GATC	2 cut(s)	289, 496
Sau96I	GGNCC	3 cut(s)	20, 245, 397
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	269, 513
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	3 cut(s)	20, 245, 397
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	79, 87, 316, 542
SseBI	AGGCCT	1 cut(s)	607
SspMI	CTAG	3 cut(s)	201, 636, 646
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	2 cut(s)	267, 511
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	84, 432
TasI	AATT	4 cut(s)	79, 87, 316, 542
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	383, 638
TseI	GCWGC	4 cut(s)	32, 224, 361, 462
Tsp45I	GTSAC	2 cut(s)	383, 638
TspDTI	ATGAA	1 cut(s)	549
TspRI	CASTG	1 cut(s)	299
VpaK11BI	GGWCC	3 cut(s)	20, 245, 397
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	3 cut(s)	201, 636, 646
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.