Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Forward (+)

14534407 .. 14537283

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTAGTGAAAGTTTATGGTCCAGTTAGGGCAGCCTGCCCCCAGAGGGTGATGGTTTGTCTTTGGAGAAAGGAGTTGAGTTTGAGGTTGTGCATGTTGATCTTCAAGCAGGAGAGCAGAAGCAACCTCACATTCTTGCCCGACAGATGTGGGGCTCCCTCTGTTACAGAATCTAGAGCTATCGTGAGGTACTATGCAGCCAAGTACGCAGACCGTGGCCCTAACCTGTTGGGAACAACACTGGAGGAGAAGGCTCTGGTGGATCAATGGCTCGAAGTCGAATCACACAACTTCAACGACTTGATTTATGCTGTGGTGCTTCAACTTGTGGTCCTTCCCAGCATGGGCGAAACTAGCGACTTGGCATTGGTGCGCGCTTGTGAAGGAAAACTGAAAAAGGTATTCGATGTGTATGAGGAGAGACTATCCAAGAGCACCTATCTGGCCGGAAGCTCCTTCACTTTGGCTGATCTGAGCCATCTTCCAGCGATTCGGTTTCTGATGGACGAGGTCAAAATGGGACATTTGGTCACGGAGAGGAAGAATGTGAATGCTTGGTGGGAAAAAATTTCGAACAGGCCTGCATGGAAGAAACTCATGAAGCTTGCTCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

205

Amino Acids

23.45

Weight (kDa)

9.17

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	104 - 194	4.7e-15	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	124 - 186	2e-06	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	127 - 197	1e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	375
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	2 cut(s)	191, 206
AfiI	CCNNNNNNNGG	2 cut(s)	46, 344
AgsI	TTSAA	3 cut(s)	106, 295, 323
AhdI	GACNNNNNGTC	1 cut(s)	527
AluBI	AGCT	3 cut(s)	179, 453, 604
AluI	AGCT	3 cut(s)	179, 453, 604
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	3 cut(s)	217, 444, 578
ApeKI	GCWGC	2 cut(s)	32, 197
ApoI	RAATTY	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	375, 377
AspS9I	GGNCC	3 cut(s)	20, 218, 331
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	20, 331
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	2 cut(s)	44, 209
BccI	CCATC	3 cut(s)	46, 486, 496
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	3 cut(s)	174, 354, 616
BisI	GCNGC	2 cut(s)	33, 198
BlsI	GCNGC	2 cut(s)	34, 199
Bme18I	GGWCC	2 cut(s)	20, 331
BmeRI	GACNNNNNGTC	1 cut(s)	527
BmgT120I	GGNCC	3 cut(s)	20, 218, 331
BmiI	GGNNCC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 344
Bse1I	ACTGG	2 cut(s)	23, 246
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	46, 344
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	23, 246
BsePI	GCGCGC	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	260, 431
BseXI	GCAGC	2 cut(s)	44, 209
BseYI	CCCAGC	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	3 cut(s)	219, 446, 580
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	46, 344
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	219, 446, 580
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	157, 437
Bsp143I	GATC	3 cut(s)	99, 262, 469
BspANI	GGCC	3 cut(s)	219, 446, 580
BspCNI	CTCAG	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	23, 246
BssECI	CCNNGG	1 cut(s)	214
BssHII	GCGCGC	1 cut(s)	373
BssMI	GATC	3 cut(s)	99, 262, 469
Bst4CI	ACNGT	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	4 cut(s)	37, 375, 582, 606
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	375, 377
BstKTI	GATC	3 cut(s)	102, 265, 472
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	3 cut(s)	99, 262, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 354
BstNSI	RCATGY	1 cut(s)	97
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	44, 209
BsuRI	GGCC	3 cut(s)	219, 446, 580
BtgI	CCRYGG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	4 cut(s)	37, 375, 582, 606
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	2 cut(s)	375, 377
Cfr13I	GGNCC	3 cut(s)	20, 218, 331
Csp6I	GTAC	2 cut(s)	190, 205
CviAII	CATG	4 cut(s)	94, 343, 585, 598
CviQI	GTAC	2 cut(s)	190, 205
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	3 cut(s)	101, 264, 471
DpnII	GATC	3 cut(s)	99, 262, 469
DriI	GACNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	1 cut(s)	444
Eam1105I	GACNNNNNGTC	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	20, 331
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	4 cut(s)	97, 346, 588, 601
FaiI	YATR	8 cut(s)	18, 95, 195, 309, 344, 414, 586, 599
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	4 cut(s)	93, 342, 584, 597
Fnu4HI	GCNGC	2 cut(s)	33, 198
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	33, 198
FspBI	CTAG	3 cut(s)	174, 354, 616
GlaI	GCGC	2 cut(s)	374, 376
GluI	GCNGC	2 cut(s)	33, 198
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	219, 446, 580
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	2 cut(s)	375, 377
Hin1II	CATG	4 cut(s)	97, 346, 588, 601
Hin6I	GCGC	2 cut(s)	373, 375
HinP1I	GCGC	2 cut(s)	373, 375
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	170, 281, 490
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	474, 501
Hpy188III	TCNNGA	3 cut(s)	174, 184, 598
HpyAV	CCTTC	4 cut(s)	244, 344, 377, 466
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	93, 197, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 354
HpyF3I	CTNAG	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	97, 346, 588, 601
HspAI	GCGC	2 cut(s)	373, 375
Kzo9I	GATC	3 cut(s)	99, 262, 469
LmnI	GCTCC	2 cut(s)	160, 458
Lsp1109I	GCAGC	2 cut(s)	44, 209
MaeI	CTAG	3 cut(s)	174, 354, 616
MaeIII	GTNAC	2 cut(s)	163, 529
MalI	GATC	3 cut(s)	101, 264, 471
MboI	GATC	3 cut(s)	99, 262, 469
MboII	GAAGA	4 cut(s)	94, 473, 553, 601
MhlI	GDGCHC	2 cut(s)	157, 437
MluCI	AATT	1 cut(s)	567
MnlI	CCTC	9 cut(s)	39, 78, 137, 169, 180, 238, 409, 502, 531
MspI	CCGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	556
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	206, 354
NdeII	GATC	3 cut(s)	99, 262, 469
NlaIII	CATG	4 cut(s)	97, 346, 588, 601
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	572
PagI	TCATGA	1 cut(s)	597
PauI	GCGCGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	580
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	170, 281, 490
PflFI	GACNNNGTC	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	34, 199
PspFI	CCCAGC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	3 cut(s)	20, 218, 331
PsyI	GACNNNGTC	1 cut(s)	509
PteI	GCGCGC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	191, 206
RsaNI	GTAC	2 cut(s)	190, 205
SatI	GCNGC	2 cut(s)	33, 198
Sau3AI	GATC	3 cut(s)	99, 262, 469
Sau96I	GGNCC	3 cut(s)	20, 218, 331
SduI	GDGCHC	2 cut(s)	157, 437
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	2 cut(s)	20, 331
Sse9I	AATT	1 cut(s)	567
SseBI	AGGCCT	1 cut(s)	580
SspMI	CTAG	3 cut(s)	174, 354, 616
StuI	AGGCCT	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	273, 279, 405, 572
TasI	AATT	1 cut(s)	567
TfiI	GAWTC	3 cut(s)	170, 281, 490
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	32, 197
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	1 cut(s)	614
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	20, 331
XapI	RAATTY	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	3 cut(s)	174, 354, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.