Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Forward (+)

19147400 .. 19148949

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTACTGAAAGTTTATGGTCCAGTTAGGGCAGCCTGCCCCCAGAGGGTGATGGTTTGCCTTTTGGAGCTAGGGGTTGAGTTTGAGATTGTGCCTGTTGATCTTCAAGCAGGAGAGCAAAAGCAACCTCACATTCTTGCTCGACAGCCATTTGGGCAAGTTCCAGCAATCGAAGATGGCGATTTCAAGCTTTTTGAATCTAGAGCTATCGTAAGATACTATGCGGCTAAGTATGCAGAGCGTGGTCCTAACCTGCTAGGAACAACACTGGAGGAGAAGGCACTGGTGGATCAATGGCTCGAAGTCGAATCACACAACTTCAACGACTTGGTTTTCACTGTGGTACTTCAACTTGTGATCCTTCCCAGCATGGGCCAACCTGGCGACTTGGCCTTGGTGCGCTCTTGTGAAGAAAAACTGAAAAAGGTATTCGATGTGTATGAGGAGAGACTGTCCAAGAGCACCTATCTGGCCGGAAACTACTTCAGTTTGGCTGATCTGAGCCATCTTCCGGCGATTCGGTTTCTGGTTGACGAGTTCAAAATGGGACATTTGATCACGGAGAGGAAGAATGTGAATGCTTGGTGGAAAGATATTTCCAATAGGCCTGCATGGAAGAAACTTATGAAGCTTGCTCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

215

Amino Acids

24.47

Weight (kDa)

6.44

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 73	3.2e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 81	1.9e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 75	2.3e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	116 - 203	1.1e-14	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	136 - 206	9.3e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	261
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	297, 352
AcoI	YGGCCR	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	469
AfaI	GTAC	2 cut(s)	6, 345
AfiI	CCNNNNNNNGG	3 cut(s)	46, 371, 511
AgsI	TTSAA	6 cut(s)	107, 187, 197, 322, 350, 541
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	70, 190, 206, 631
AluI	AGCT	4 cut(s)	70, 190, 206, 631
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	2 cut(s)	297, 352
AoxI	GGCC	4 cut(s)	373, 390, 471, 605
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	20, 245, 373
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	20, 245
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	46, 170, 513
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	4 cut(s)	71, 201, 257, 643
BfuAI	ACCTGC	1 cut(s)	261
BglI	GCCNNNNNGGC	2 cut(s)	154, 381
BisI	GCNGC	2 cut(s)	33, 225
BlsI	GCNGC	2 cut(s)	34, 226
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	2 cut(s)	20, 245
BmgT120I	GGNCC	3 cut(s)	20, 245, 373
BmrFI	CCNGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 371, 511
Bse1I	ACTGG	3 cut(s)	23, 273, 288
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	46, 371, 511
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	3 cut(s)	23, 273, 288
BseRI	GAGGAG	2 cut(s)	287, 458
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	4 cut(s)	375, 392, 473, 607
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	474, 512
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	3 cut(s)	46, 371, 511
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	4 cut(s)	375, 392, 473, 607
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	5 cut(s)	100, 289, 357, 496, 555
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	4 cut(s)	375, 392, 473, 607
BspCNI	CTCAG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	297, 352
BsrI	ACTGG	3 cut(s)	23, 273, 288
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	5 cut(s)	100, 289, 357, 496, 555
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	340, 453
BstC8I	GCNNGC	3 cut(s)	37, 609, 633
BstDEI	CTNAG	2 cut(s)	228, 500
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	5 cut(s)	103, 292, 360, 499, 558
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	5 cut(s)	100, 289, 357, 496, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 233, 381
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	375, 392, 473, 607
BtsIMutI	CAGTG	3 cut(s)	266, 281, 336
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	37, 609, 633
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	3 cut(s)	20, 245, 373
Csp6I	GTAC	2 cut(s)	5, 344
CviAII	CATG	2 cut(s)	370, 612
CviQI	GTAC	2 cut(s)	5, 344
DdeI	CTNAG	2 cut(s)	228, 500
DpnI	GATC	5 cut(s)	102, 291, 359, 498, 557
DpnII	GATC	5 cut(s)	100, 289, 357, 496, 555
EaeI	YGGCCR	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	20, 245
Eco57I	CTGAAG	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	2 cut(s)	373, 615
FaiI	YATR	7 cut(s)	18, 222, 234, 371, 441, 613, 626
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	2 cut(s)	369, 611
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	2 cut(s)	33, 225
Fsp4HI	GCNGC	2 cut(s)	33, 225
FspBI	CTAG	4 cut(s)	71, 201, 257, 643
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	33, 225
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	4 cut(s)	375, 392, 473, 607
HapII	CCGG	2 cut(s)	474, 512
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	373, 615
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	188, 629
HinfI	GANTC	3 cut(s)	197, 308, 517
HpaII	CCGG	2 cut(s)	474, 512
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	2 cut(s)	271, 371
HpyCH4III	ACNGT	2 cut(s)	340, 453
HpyCH4V	TGCA	2 cut(s)	236, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 233, 381
HpyF3I	CTNAG	2 cut(s)	228, 500
Hsp92II	CATG	2 cut(s)	373, 615
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	100, 289, 357, 496, 555
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	4 cut(s)	71, 201, 257, 643
MalI	GATC	5 cut(s)	102, 291, 359, 498, 557
MboI	GATC	5 cut(s)	100, 289, 357, 496, 555
MboII	GAAGA	6 cut(s)	95, 185, 422, 500, 580, 628
MhlI	GDGCHC	1 cut(s)	464
MnlI	CCTC	5 cut(s)	39, 138, 265, 436, 558
MspI	CCGG	2 cut(s)	474, 512
MspR9I	CCNGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	154, 233, 381
NdeII	GATC	5 cut(s)	100, 289, 357, 496, 555
NlaIII	CATG	2 cut(s)	373, 615
PceI	AGGCCT	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	3 cut(s)	197, 308, 517
PkrI	GCNGC	2 cut(s)	34, 226
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	3 cut(s)	20, 245, 373
RsaI	GTAC	2 cut(s)	6, 345
RsaNI	GTAC	2 cut(s)	5, 344
SatI	GCNGC	2 cut(s)	33, 225
Sau3AI	GATC	5 cut(s)	100, 289, 357, 496, 555
Sau96I	GGNCC	3 cut(s)	20, 245, 373
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	9 cut(s)	72, 130, 192, 208, 255, 382, 429, 467, 633
SinI	GGWCC	2 cut(s)	20, 245
SseBI	AGGCCT	1 cut(s)	607
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	4 cut(s)	71, 201, 257, 643
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	340, 453
TaqI	TCGA	5 cut(s)	142, 171, 300, 306, 432
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	197, 308, 517
TscAI	CASTG	3 cut(s)	273, 288, 343
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	641
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	3 cut(s)	273, 288, 343
VpaK11BI	GGWCC	2 cut(s)	20, 245
XbaI	TCTAGA	1 cut(s)	200
XspI	CTAG	4 cut(s)	71, 201, 257, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.