Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Reverse (-)

34683683 .. 34686214

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG322100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTAGTGAAAGTTTATGGTCCAGTTAGGGCAGCCTGCCCCCAGAGGGTGATGGTTTGTCTTTTGGAGAAAGGAGTTGAGTTTGAGGTTGTGCATGTTGATCTTCAAGTAGGAGAGCAGAAGCAACCTCACATTCTTGCCCGACAGCCGTTTGGGCAAGTTCCAGCAATTGAAGATGGCGATTTCAAGCTTTTCGAATCTAGAGCTATCGTGAGGTACTATGCAGCCAAGTACGCAGACCGTGGCCCTAACCTGTTGGGAACAACACTAGAGGAGAAGGCTCTGGTGGATCAATGGCTTGAAGTCGAATCACACAACTTCAACGACTTGGTTTATGCTGTGGTGCTTCAACTTGTGGTCCTTCCCAGCATGGGCGAAACTAGCGACTTGGCATTGGTGCGCGCTTGTGAAGAAAAACTGAAAAAGGTATTCGATGTGTATGAGGAGAGACTATCCAAGAGCACCTATCTGGCCGGACGCTCCTTCACTTTGGCTGATCTGAGCCATCTTCCAGCGATTCGGTTTCTGATGGACGAGGTCAAAATGGGACATTTGGTCACGGAGAGGAAGAATGTGAATGCTTGGTGGGAAAAAATTTCGAACAGGCCTGCATGGAAGAAACTCATGAAGCTTGCTCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

214

Amino Acids

24.47

Weight (kDa)

6.97

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 73	1.4e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 80	1.5e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 75	6.3e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	113 - 203	8.2e-15	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	133 - 195	6.9e-06	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	135 - 206	3.5e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	402
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	594
AfaI	GTAC	2 cut(s)	218, 233
AfiI	CCNNNNNNNGG	2 cut(s)	46, 371
AgsI	TTSAA	6 cut(s)	107, 173, 187, 302, 322, 350
AhdI	GACNNNNNGTC	1 cut(s)	554
AluBI	AGCT	3 cut(s)	190, 206, 631
AluI	AGCT	3 cut(s)	190, 206, 631
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	3 cut(s)	244, 471, 605
ApeKI	GCWGC	2 cut(s)	32, 224
ApoI	RAATTY	1 cut(s)	594
AspLEI	GCGC	2 cut(s)	402, 404
AspS9I	GGNCC	3 cut(s)	20, 245, 358
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	2 cut(s)	195, 599
AvaII	GGWCC	2 cut(s)	20, 358
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	44, 236
BccI	CCATC	4 cut(s)	46, 170, 513, 523
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	4 cut(s)	201, 269, 381, 643
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	33, 225
BlsI	GCNGC	2 cut(s)	34, 226
Bme18I	GGWCC	2 cut(s)	20, 358
BmeRI	GACNNNNNGTC	1 cut(s)	554
BmgT120I	GGNCC	3 cut(s)	20, 245, 358
Bpu14I	TTCGAA	2 cut(s)	195, 599
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 371
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	46, 371
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	23
BsePI	GCGCGC	1 cut(s)	400
BseRI	GAGGAG	2 cut(s)	287, 458
BseXI	GCAGC	2 cut(s)	44, 236
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	246, 473, 607
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	2 cut(s)	46, 371
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	246, 473, 607
Bsp119I	TTCGAA	2 cut(s)	195, 599
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	100, 289, 496
BspANI	GGCC	3 cut(s)	246, 473, 607
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	624
BspPI	GGATC	1 cut(s)	297
BspT104I	TTCGAA	2 cut(s)	195, 599
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	241
BssHII	GCGCGC	1 cut(s)	400
BssMI	GATC	3 cut(s)	100, 289, 496
Bst4CI	ACNGT	1 cut(s)	242
BstBI	TTCGAA	2 cut(s)	195, 599
BstC8I	GCNNGC	4 cut(s)	37, 402, 609, 633
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	2 cut(s)	402, 404
BstKTI	GATC	3 cut(s)	103, 292, 499
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	100, 289, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 233, 381
BstNSI	RCATGY	1 cut(s)	98
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	44, 236
BsuRI	GGCC	3 cut(s)	246, 473, 607
BtgI	CCRYGG	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	37, 402, 609, 633
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	2 cut(s)	402, 404
Cfr13I	GGNCC	3 cut(s)	20, 245, 358
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	217, 232
CviAII	CATG	4 cut(s)	95, 370, 612, 625
CviQI	GTAC	2 cut(s)	217, 232
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	3 cut(s)	102, 291, 498
DpnII	GATC	3 cut(s)	100, 289, 496
DriI	GACNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	20, 358
FaeI	CATG	4 cut(s)	98, 373, 615, 628
FaiI	YATR	8 cut(s)	18, 96, 222, 336, 371, 441, 613, 626
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	4 cut(s)	94, 369, 611, 624
Fnu4HI	GCNGC	2 cut(s)	33, 225
Fsp4HI	GCNGC	2 cut(s)	33, 225
FspBI	CTAG	4 cut(s)	201, 269, 381, 643
GlaI	GCGC	2 cut(s)	401, 403
GluI	GCNGC	2 cut(s)	33, 225
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	246, 473, 607
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	2 cut(s)	402, 404
Hin1II	CATG	4 cut(s)	98, 373, 615, 628
Hin6I	GCGC	2 cut(s)	400, 402
HinP1I	GCGC	2 cut(s)	400, 402
HindIII	AAGCTT	2 cut(s)	188, 629
HinfI	GANTC	3 cut(s)	197, 308, 517
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	501, 528
Hpy188III	TCNNGA	3 cut(s)	201, 211, 625
HpyAV	CCTTC	3 cut(s)	271, 371, 493
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	94, 224, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 233, 381
HpyF3I	CTNAG	1 cut(s)	500
Hsp92II	CATG	4 cut(s)	98, 373, 615, 628
HspAI	GCGC	2 cut(s)	400, 402
Kzo9I	GATC	3 cut(s)	100, 289, 496
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	44, 236
MaeI	CTAG	4 cut(s)	201, 269, 381, 643
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	3 cut(s)	102, 291, 498
MboI	GATC	3 cut(s)	100, 289, 496
MboII	GAAGA	6 cut(s)	95, 185, 422, 500, 580, 628
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	2 cut(s)	168, 594
MnlI	CCTC	8 cut(s)	39, 79, 138, 207, 265, 436, 529, 558
MspI	CCGG	1 cut(s)	474
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	583
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	154, 233, 381
NdeII	GATC	3 cut(s)	100, 289, 496
NlaIII	CATG	4 cut(s)	98, 373, 615, 628
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	98
NspV	TTCGAA	2 cut(s)	195, 599
PagI	TCATGA	1 cut(s)	624
PauI	GCGCGC	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	607
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	3 cut(s)	197, 308, 517
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	34, 226
PspFI	CCCAGC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	20, 245, 358
PsyI	GACNNNGTC	1 cut(s)	536
PteI	GCGCGC	1 cut(s)	400
RsaI	GTAC	2 cut(s)	218, 233
RsaNI	GTAC	2 cut(s)	217, 232
SatI	GCNGC	2 cut(s)	33, 225
Sau3AI	GATC	3 cut(s)	100, 289, 496
Sau96I	GGNCC	3 cut(s)	20, 245, 358
SduI	GDGCHC	1 cut(s)	464
SfuI	TTCGAA	2 cut(s)	195, 599
SinI	GGWCC	2 cut(s)	20, 358
Sse9I	AATT	2 cut(s)	168, 594
SseBI	AGGCCT	1 cut(s)	607
SspMI	CTAG	4 cut(s)	201, 269, 381, 643
StuI	AGGCCT	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	4 cut(s)	195, 306, 432, 599
TasI	AATT	2 cut(s)	168, 594
TfiI	GAWTC	3 cut(s)	197, 308, 517
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	32, 224
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	1 cut(s)	641
TspGWI	ACGGA	1 cut(s)	575
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	20, 358
XapI	RAATTY	1 cut(s)	594
XbaI	TCTAGA	1 cut(s)	200
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	4 cut(s)	201, 269, 381, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.