Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213432.1

Orthogroup ID

OG0013890

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213432.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 449 bp

aatctagagctatcgtgaggtactatgcagccaagtacgcagaccgtggccctaacctgttgggaacaacactggaggagaaggctctggtggatcaatggcttgaagtcgaatcacacaacttcaacgacttggtttatgctgtggtgcttcaacttgtggtccttcccagcatgggcgaaactagcgacttggcattggtgcgcgcttgtgaagaaaaactgaaaaaggtattcgatgtgtatgaggagagactatccaagagcacctatctggccggacgctccttcactttggctgatctgagccatcttccagcgattcggtttctgatggacgaggtcaaaatgggacatttggtcacggagaggaagaatgtgaatgcttggtgggaaaaaatttcgaacaggcctgcatggaagaaactcatgaagcttgctcaatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009705 GO:0009812 GO:0009889 GO:0009962 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019222 GO:0019748 GO:0031090 GO:0034641 GO:0042221 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046283 GO:0050789 GO:0050896 GO:0051186 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098754 GO:0098805 GO:1900384 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

148

Amino Acids

17.06

Weight (kDa)

8.61

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03190 AT5G17220
fragaria_vesca	FvH4_1g27460
malus_domestica	MD17G1272100.v1.1
prunus_persica	Prupe.3G013600_v2.0.a1
pyrus_communis	pycom17g27080
rosa_chinensis	RchiOBHm_Chr3g0488551
rosa_laevigata	RLG00000022944
rosa_multiflora	Rmu_co8213432.1_g000001 Rmu_sc0005363.1_g000020
rosa_roxburghii	Rroxscaffold_6G00394180
rosa_rugosa	Rorug03G0239200.1
rosa_samantha	Rh3AG288000 Rh3BG324700 Rh3CG322100 Rh3DG320800
rosa_wichuraiana	Rw3G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	2 cut(s)	22, 37
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	106, 126, 154
AhdI	GACNNNNNGTC	1 cut(s)	358
AluBI	AGCT	2 cut(s)	10, 435
AluI	AGCT	2 cut(s)	10, 435
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	3 cut(s)	48, 275, 409
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	206, 208
AspS9I	GGNCC	2 cut(s)	49, 162
AsuII	TTCGAA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	317, 327
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	3 cut(s)	5, 185, 447
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	49, 162
BpmI	CTGGAG	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	77
BsePI	GCGCGC	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	91, 262
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	50, 277, 411
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	50, 277, 411
Bsp119I	TTCGAA	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	93, 300
BspANI	GGCC	3 cut(s)	50, 277, 411
BspCNI	CTCAG	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	428
BspPI	GGATC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	45
BssHII	GCGCGC	1 cut(s)	204
BssMI	GATC	2 cut(s)	93, 300
Bst4CI	ACNGT	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	206, 413, 437
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	1 cut(s)	45
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	206, 208
BstKTI	GATC	2 cut(s)	96, 303
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	93, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 185
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	50, 277, 411
BtgI	CCRYGG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	206, 413, 437
CciI	TCATGA	1 cut(s)	428
CfoI	GCGC	2 cut(s)	206, 208
Cfr13I	GGNCC	2 cut(s)	49, 162
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	21, 36
CviAII	CATG	3 cut(s)	174, 416, 429
CviQI	GTAC	2 cut(s)	21, 36
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	95, 302
DpnII	GATC	2 cut(s)	93, 300
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	275
Eam1105I	GACNNNNNGTC	1 cut(s)	358
Eco147I	AGGCCT	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	162
FaeI	CATG	3 cut(s)	177, 419, 432
FaiI	YATR	6 cut(s)	26, 140, 175, 245, 417, 430
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	173, 415, 428
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	3 cut(s)	5, 185, 447
GlaI	GCGC	2 cut(s)	205, 207
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	50, 277, 411
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	206, 208
Hin1II	CATG	3 cut(s)	177, 419, 432
Hin6I	GCGC	2 cut(s)	204, 206
HinP1I	GCGC	2 cut(s)	204, 206
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	2 cut(s)	112, 321
HpaII	CCGG	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	305, 332
Hpy188III	TCNNGA	3 cut(s)	5, 15, 429
HpyAV	CCTTC	3 cut(s)	75, 175, 297
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	28, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 185
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	177, 419, 432
HspAI	GCGC	2 cut(s)	204, 206
Kzo9I	GATC	2 cut(s)	93, 300
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	9 cut(s)	58, 70, 73, 183, 259, 291, 329, 393, 425
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	3 cut(s)	5, 185, 447
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	95, 302
MboI	GATC	2 cut(s)	93, 300
MboII	GAAGA	4 cut(s)	226, 304, 384, 432
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	398
MnlI	CCTC	5 cut(s)	11, 69, 240, 333, 362
MspI	CCGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	387
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	37, 185
NdeII	GATC	2 cut(s)	93, 300
NlaIII	CATG	3 cut(s)	177, 419, 432
NmuCI	GTSAC	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	403
PagI	TCATGA	1 cut(s)	428
PauI	GCGCGC	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	411
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	112, 321
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	49, 162
PsyI	GACNNNGTC	1 cut(s)	340
PteI	GCGCGC	1 cut(s)	204
RsaI	GTAC	2 cut(s)	22, 37
RsaNI	GTAC	2 cut(s)	21, 36
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	93, 300
Sau96I	GGNCC	2 cut(s)	49, 162
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	7 cut(s)	12, 22, 59, 233, 271, 344, 437
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	1 cut(s)	398
SseBI	AGGCCT	1 cut(s)	411
SspMI	CTAG	3 cut(s)	5, 185, 447
StuI	AGGCCT	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	110, 236, 403
TasI	AATT	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	112, 321
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	77
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	4
XspI	CTAG	3 cut(s)	5, 185, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.