Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017511

Physical Location & Seq

Genomic Coordinates Forward (+)

5720283 .. 5721659

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGTGATCAAAGTATATCTAATAAGCCTCTGGATGAGAAGGTTTCAATGGATTTGACTTGTGGTCAGGAGGCGATTTTGGAAGAGCTTAGGATTTGTTTACCCAAATGGGTTACACAAGAACAAGTCACAGATATGATTAGAGGGACATGTAGGAATATAGTCGAAATTGTTGATAATTTTTACGAGCACGAGACTAAATTCTATGAGCAAGTTTCTGCTGTTATATCTTTCACTTCTAGAGATGGAATTAGTTCGAGTAACCACGATGCATTTGTTTCGAAACTGGAGTTTATTCACTGTGAAACAGAGCGGAGTGAAAGTTGTCAGCCATCGCAGTTTCACAAGCTTAAGAGCATGAGTAGTTCACAGAAGAGCAGTATTTCTCCTGTGAAGAGGAACAGAAAGATTAAAGGTAAACCAAAGAAGAAAGGAAAAGCTTCTTCTAAGGTAGAATCTGGAGGCCCAAAGCAAGCTTCAATAACTAAATTCTTCAACAAAGTTTCTTCAGAAGGAACCAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.62

Weight (kDa)

9.06

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17360
rosa_chinensis	RchiOBHm_Chr3g0493941
rosa_laevigata	RLG00000022689
rosa_multiflora	Rmu_co8383177.1_g000001 Rmu_sc0000568.1_g000023 Rmu_sc0010399.1_g000002
rosa_samantha	Rh3AG313100 Rh3BG348300 Rh3BG349300 Rh3CG346100 Rh3DG348600
rosa_wichuraiana	Rw3G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	313
AciI	CCGC	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	200, 488
AcuI	CTGAAG	1 cut(s)	492
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	48, 480, 496
AhdI	GACNNNNNGTC	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	4 cut(s)	88, 349, 440, 476
AluI	AGCT	4 cut(s)	88, 349, 440, 476
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	463
ApoI	RAATTY	2 cut(s)	200, 488
Asp700I	GAANNNNTTC	2 cut(s)	253, 439
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	281
BauI	CACGAG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	2 cut(s)	239, 340
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	517
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	2 cut(s)	308, 480
Bpu10I	CCTNAGC	1 cut(s)	89
Bpu14I	TTCGAA	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bse1I	ACTGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	465
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	517
BspQI	GCTCTTC	2 cut(s)	78, 368
BspT104I	TTCGAA	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	3 cut(s)	78, 368, 389
BstAFI	CTTAAG	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	89, 447, 525
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	7
BstNSI	RCATGY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	464
CviAII	CATG	2 cut(s)	150, 358
CviJI	RGCY	7 cut(s)	28, 88, 331, 349, 440, 465, 476
CviKI_1	RGCY	7 cut(s)	28, 88, 331, 349, 440, 465, 476
DdeI	CTNAG	3 cut(s)	89, 447, 525
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DriI	GACNNNNNGTC	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	78, 368, 389
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	3 cut(s)	78, 368, 389
Eco57I	CTGAAG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	2 cut(s)	153, 361
FaiI	YATR	7 cut(s)	17, 137, 151, 161, 207, 227, 359
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	149, 357
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	1 cut(s)	240
GsuI	CTGGAG	2 cut(s)	308, 480
HaeIII	GGCC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	153, 361
HindIII	AAGCTT	3 cut(s)	347, 438, 474
HinfI	GANTC	1 cut(s)	455
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	101, 368, 419
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	4 cut(s)	32, 68, 240, 459
Hpy8I	GTNNAC	3 cut(s)	101, 368, 419
HpyAV	CCTTC	2 cut(s)	34, 506
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	89, 447, 525
Hsp92II	CATG	2 cut(s)	153, 361
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LguI	GCTCTTC	2 cut(s)	78, 368
LpnPI	CCDG	5 cut(s)	17, 53, 272, 402, 444
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	112, 127, 260
MalI	GATC	1 cut(s)	9
MbiI	CCGCTC	1 cut(s)	313
MboI	GATC	1 cut(s)	7
MboII	GAAGA	7 cut(s)	95, 385, 406, 435, 439, 484, 498
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	5 cut(s)	168, 178, 200, 249, 488
MnlI	CCTC	5 cut(s)	39, 64, 137, 390, 455
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	2 cut(s)	253, 439
MseI	TTAA	2 cut(s)	351, 411
MslI	CAYNNNNRTG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	350
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	153, 361
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	153
NspV	TTCGAA	1 cut(s)	281
PciI	ACATGT	1 cut(s)	149
PciSI	GCTCTTC	2 cut(s)	78, 368
PdmI	GAANNNNTTC	2 cut(s)	253, 439
PfeI	GAWTC	1 cut(s)	455
PscI	ACATGT	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	134
SapI	GCTCTTC	2 cut(s)	78, 368
SaqAI	TTAA	2 cut(s)	351, 411
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	464
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	7 cut(s)	45, 90, 351, 418, 442, 453, 478
SfaNI	GCATC	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	5 cut(s)	168, 178, 200, 249, 488
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	165, 257, 281
TasI	AATT	5 cut(s)	168, 178, 200, 249, 488
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	351, 411
Tru9I	TTAA	2 cut(s)	351, 411
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	200, 488
XbaI	TCTAGA	1 cut(s)	239
XceI	RCATGY	1 cut(s)	153
XmnI	GAANNNNTTC	2 cut(s)	253, 439
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.