Rh3BG349300

DNA ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017511
Physical Location & Seq
Reverse (-)
38950804 .. 38952711
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG349300.1

Sequence Viewer

Length: 1908 bp
ATGACGGCTCTGGATTCTACGGACCTCTTCCTGACTGCCCTAACCGCCTTTTCCCACCCACCCAGACCCAGACCCAGACCCCTTGAACTCTCTCTCCCTCCAATTCCCTCCACATTCCCCCACTCCAAACTCATCCCCAGAACCCGTTTCGCCGTCGACGCATTCCGCTATGCCGGCGATTATTCCGTCTCTTACTTCCTCTCTCACTTCCACTCCGATCACTACGGCGGTCTCTCCCCCAATTGGTCCCAAGGCCTCGTCTTTTGCTCCCCCACCACCGCTCGTCTTCTCACAGACGTCCTCAACGTCTCTCCGCTTTTCGTGGTTCCTCTGCCGCTCGGACAGCCCCTTCTCATTGATGGATGCGAGGTCGTGCTTATTGACGCCAATCACTGCCCAGGCGCCGTTCAGTTCTTGTTCAGAGTTCCGGCCTCCAATGGAGACTTGCAGAGGTATGTTCACACCGGTGATTTTCGCTTTTCTGCTCCGATGAAGCTAGACCCTTTTCTCTGTAAATTTGTGGGTTCAGACGCCGTTTTCTTGGACACAACTTATTGCAATCCCAAATTCGTGTTTCCTTCCCAAGAAGAATCTGTTGATTATATTTCTAGCTTGATAGAAAGAGTTGGAGTTGGAGGTGAACATGAAGTTTCTGTGAAAAGTGTTCTGTTCCTTGTTGCTACATATGTGATTGGGAAAGAGAAGATTTTGATAGAAATTGCTCGTAGATGTAAGCGTAAAGTGTACGTGGATGCTCCAAAAATGGCGGTGCTGCGTGTTTTGGGTTACGGAGACAGTGGAGTGTTTACGGAGGATGAATGTGAGAGTGATGTGCATGTTGTTGGGTGGAATGTGTTGGGTGAGACTTGGCCATATTTCAGGCCAAATTTTGTGAAAATGGAGGAGATTATGGTTGAGAGGGGGTATTCCAGGGTTGTAGGGTTCGTCCCTACTGGCTGGACTTATGAAGTCAAGCGTAACAAGTTCTCGGTGAGGTCAAAGGATGCTTTTGAGATCCATCTTGTACCCTACAGTGAACATTCAAGCTATGATGAACTTAGAGAATACGTCAGGTTTTTGAAACCAAAGCGTGTGATTCCTACAGTGGGCTCCGATGTGGAAAAGATAGACAGTAAACATGCCAGTAAAATGCAAAAGCATTTTACTGGGTTAATTGATGAAATGGCCAACAAAAAAGAGTTCTTGAGGGGTTTTCATCGTGGGACTACAGAAGGAGATGGCAAGGTTCACAGTGATGCCAAAGATTACACGATGGAGGGGCAGGATCAAGAGAAAAAGGCAACACCTTCAGATATTGATACTATGGGAGATACTAATGTAGGCTTTGGTAAGGAATTGTACTCTCCTCTCCAAGAACCTGATTCACAGACTCCAATATTGTTAACTGATGATAAAGCAGAGGAAATTATTCAACAACTTCGTGATTGTTTGCCGTCATGGGTCACTCGCCAGCAGATGCTAGATCTGATTGGGAGCTCAGGAGGGGACATTGTTGAAGCAGTCACTAAATTTTATGATCGTGAAACAGAATTTCATGATCAAGGAATTGCCTCTACAAGTGCCGTATCTGTATCCGAGACCAGCTCACTCTGTGACACAGCATCACCGACAAAAGCAGGTTCTGTTCATGCAAATATTGATGTTTCTTCAAGCCAAGCTCATATTTCACCCAACCCAAGAAATATTGTTAAAAGTGGCATTTCCCCTGGAAAAAGAGGGAGGAAGATCAGTAATAAAGTTAACAAGAAAGTAAAATTACAGTCAAAATTGGATTCGTGTGGGCCAAAACAATCGACAATAACAAGGTTTTTTAGTAAAGTTTTGCCTGACGTTACTAAAAGTGCAGATATTGGATCAATAGGTGAACAAAACCCTAAAGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000012 GO:0000726 GO:0002237 GO:0003006 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0010154 GO:0010225 GO:0010243 GO:0015074 GO:0016070 GO:0016874 GO:0016886 GO:0022414 GO:0022616 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046677 GO:0048316 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051103 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0090351 GO:0140097 GO:1901360 GO:1901576 GO:1901652 GO:1901698 GO:1901700 GO:1904975 GO:2000683 GO:2000685
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430
Pfam Domains
Protein Families
DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DRMBL

Protein Analysis

635

Amino Acids

70.66

Weight (kDa)

6.43

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DRMBL PF07522 267 - 370 1e-21 DNA repair metallo-beta-lactamase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17360
rosa_chinensis RchiOBHm_Chr3g0493941
rosa_laevigata RLG00000022689
rosa_multiflora Rmu_co8383177.1_g000001 Rmu_sc0000568.1_g000023 Rmu_sc0010399.1_g000002
rosa_samantha Rh3AG313100 Rh3BG348300 Rh3BG349300 Rh3CG346100 Rh3DG348600
rosa_wichuraiana Rw3G027410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 1628
AccB1I GGYRCC 1 cut(s) 401
AccBSI CCGCTC 2 cut(s) 281, 337
AccI GTMKAC 1 cut(s) 156
AciI CCGC 7 cut(s) 45, 166, 228, 279, 314, 335, 767
AclWI GGATC 3 cut(s) 1009, 1293, 1882
AcoI YGGCCR 2 cut(s) 869, 1185
AcsI RAATTY 5 cut(s) 515, 566, 886, 1529, 1550
AcuI CTGAAG 1 cut(s) 1293
AcyI GRCGYC 4 cut(s) 297, 384, 402, 531
AdeI CACNNNGTG 1 cut(s) 1613
AfaI GTAC 3 cut(s) 746, 1026, 1361
AfiI CCNNNNNNNGG 2 cut(s) 243, 1106
AgeI ACCGGT 1 cut(s) 464
AgsI TTSAA 6 cut(s) 86, 1044, 1081, 1433, 1517, 1671
AjnI CCWGG 3 cut(s) 397, 929, 1726
AleI CACNNNNGTG 1 cut(s) 465
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 6 cut(s) 496, 612, 1047, 1497, 1605, 1679
AluI AGCT 6 cut(s) 496, 612, 1047, 1497, 1605, 1679
Alw21I GWGCWC 1 cut(s) 1499
Alw26I GTCTC 7 cut(s) 193, 236, 313, 435, 786, 857, 1592
AlwI GGATC 3 cut(s) 1009, 1293, 1882
AlwNI CAGNNNCTG 1 cut(s) 1643
AoxI GGCC 6 cut(s) 253, 429, 869, 881, 1185, 1802
ApeKI GCWGC 1 cut(s) 772
ApoI RAATTY 5 cut(s) 515, 566, 886, 1529, 1550
AsiGI ACCGGT 1 cut(s) 464
Asp700I GAANNNNTTC 1 cut(s) 1428
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 22, 246, 1802
AsuHPI GGTGA 7 cut(s) 479, 650, 872, 1003, 1617, 1680, 1895
AvaII GGWCC 2 cut(s) 22, 246
BaeI ACNNNNGTAYC 2 cut(s) 1323, 1356
BalI TGGCCA 2 cut(s) 871, 1187
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 2 cut(s) 1112, 1499
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 1499
BbvI GCAGC 1 cut(s) 759
BccI CCATC 4 cut(s) 353, 1026, 1232, 1267
BceAI ACGGC 7 cut(s) 21, 137, 241, 389, 518, 1438, 1568
BciT130I CCWGG 3 cut(s) 399, 931, 1728
BciVI GTATCC 1 cut(s) 1603
BclI TGATCA 1 cut(s) 1558
BcoDI GTCTC 7 cut(s) 193, 236, 313, 435, 786, 857, 1592
BfaI CTAG 3 cut(s) 497, 609, 1481
BfmI CTRYAG 3 cut(s) 1030, 1101, 1227
BfoI RGCGCY 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 1628
BfuI GTATCC 1 cut(s) 1603
BglII AGATCT 1 cut(s) 1483
BisI GCNGC 2 cut(s) 335, 773
BlsI GCNGC 2 cut(s) 336, 774
Bme1390I CCNGG 3 cut(s) 399, 931, 1728
Bme18I GGWCC 2 cut(s) 22, 246
BmgT120I GGNCC 3 cut(s) 22, 246, 1802
BmiI GGNNCC 4 cut(s) 248, 327, 403, 1111
BmrFI CCNGG 3 cut(s) 399, 931, 1728
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 6 cut(s) 353, 742, 994, 1246, 1467, 1631
BmuI ACTGGG 1 cut(s) 1176
BpiI GAAGAC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 1589, 1621
Bpu10I CCTNAGC 1 cut(s) 1498
BpuEI CTTGAG 1 cut(s) 1225
BsaAI YACGTR 1 cut(s) 748
BsaHI GRCGYC 4 cut(s) 297, 384, 402, 531
BsaI GGTCTC 2 cut(s) 236, 1592
BsaJI CCNNGG 4 cut(s) 250, 397, 930, 1726
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 1106
Bse118I RCCGGY 2 cut(s) 173, 464
Bse1I ACTGG 3 cut(s) 958, 1143, 1171
BseBI CCWGG 3 cut(s) 399, 931, 1728
BseDI CCNNGG 4 cut(s) 250, 397, 930, 1726
BseGI GGATG 5 cut(s) 132, 368, 757, 820, 1009
BseLI CCNNNNNNNGG 2 cut(s) 243, 1106
BseMII CTCAG 1 cut(s) 1512
BseNI ACTGG 3 cut(s) 958, 1143, 1171
BseRI GAGGAG 2 cut(s) 917, 1356
BseXI GCAGC 1 cut(s) 759
BsgI GTGCAG 1 cut(s) 1884
BshFI GGCC 6 cut(s) 255, 431, 871, 883, 1187, 1804
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 1499
BsiSI CCGG 3 cut(s) 174, 428, 465
BslFI GGGAC 4 cut(s) 232, 932, 1237, 1520
BslI CCNNNNNNNGG 2 cut(s) 243, 1106
BsmAI GTCTC 7 cut(s) 193, 236, 313, 435, 786, 857, 1592
BsmBI CGTCTC 2 cut(s) 193, 313
BsmFI GGGAC 4 cut(s) 232, 932, 1237, 1520
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 6 cut(s) 255, 431, 871, 883, 1187, 1804
Bso31I GGTCTC 2 cut(s) 236, 1592
Bsp1286I GDGCHC 2 cut(s) 1112, 1499
Bsp143I GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
BspACI CCGC 7 cut(s) 45, 166, 228, 279, 314, 335, 767
BspANI GGCC 6 cut(s) 255, 431, 871, 883, 1187, 1804
BspCNI CTCAG 1 cut(s) 1511
BspHI TCATGA 1 cut(s) 1555
BspLI GGNNCC 4 cut(s) 248, 327, 403, 1111
BspMI ACCTGC 1 cut(s) 1628
BspPI GGATC 3 cut(s) 1009, 1293, 1882
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 2 cut(s) 236, 1592
BsrBI CCGCTC 2 cut(s) 281, 337
BsrFI RCCGGY 2 cut(s) 173, 464
BsrI ACTGG 3 cut(s) 958, 1143, 1171
BssAI RCCGGY 2 cut(s) 173, 464
BssECI CCNNGG 4 cut(s) 250, 397, 930, 1726
BssMI GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
BssNI GRCGYC 4 cut(s) 297, 384, 402, 531
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 3 cut(s) 399, 931, 1728
Bst4CI ACNGT 6 cut(s) 797, 1034, 1105, 1133, 1253, 1782
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 4 cut(s) 297, 384, 402, 531
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 175, 1472
BstDEI CTNAG 2 cut(s) 1058, 1498
BstF5I GGATG 5 cut(s) 132, 368, 757, 820, 1009
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 8 cut(s) 220, 1017, 1288, 1486, 1540, 1561, 1749, 1877
BstMAI GTCTC 7 cut(s) 193, 236, 313, 435, 786, 857, 1592
BstMBI GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
BstMWI GCNNNNNNNGC 4 cut(s) 44, 158, 174, 343
BstNI CCWGG 3 cut(s) 399, 931, 1728
BstNSI RCATGY 2 cut(s) 839, 1142
BstSCI CCNGG 3 cut(s) 397, 929, 1726
BstSFI CTRYAG 3 cut(s) 1030, 1101, 1227
BstV1I GCAGC 1 cut(s) 759
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 1014, 1483
BstYI RGATCY 2 cut(s) 1014, 1483
BsuI GTATCC 1 cut(s) 1603
BsuRI GGCC 6 cut(s) 255, 431, 871, 883, 1187, 1804
BtsCI GGATG 5 cut(s) 132, 368, 757, 820, 1009
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 5 cut(s) 391, 802, 1039, 1110, 1258
BveI ACCTGC 1 cut(s) 1628
Cac8I GCNNGC 2 cut(s) 175, 1472
CaiI CAGNNNCTG 1 cut(s) 1643
CciI TCATGA 1 cut(s) 1555
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 2 cut(s) 173, 464
Cfr13I GGNCC 3 cut(s) 22, 246, 1802
CseI GACGC 3 cut(s) 167, 392, 539
Csp6I GTAC 3 cut(s) 745, 1025, 1360
CspAI ACCGGT 1 cut(s) 464
CviAII CATG 6 cut(s) 644, 836, 1139, 1458, 1556, 1649
CviQI GTAC 3 cut(s) 745, 1025, 1360
DdeI CTNAG 2 cut(s) 1058, 1498
DinI GGCGCC 1 cut(s) 403
DpnI GATC 8 cut(s) 219, 1016, 1287, 1485, 1539, 1560, 1748, 1876
DpnII GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
DraIII CACNNNGTG 1 cut(s) 1613
EaeI YGGCCR 2 cut(s) 869, 1185
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 1497
Eco130I CCWWGG 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 2 cut(s) 1112, 1499
Eco31I GGTCTC 2 cut(s) 236, 1592
Eco47I GGWCC 2 cut(s) 22, 246
Eco53kI GAGCTC 1 cut(s) 1497
Eco57I CTGAAG 1 cut(s) 1293
EcoICRI GAGCTC 1 cut(s) 1497
EcoRII CCWGG 3 cut(s) 397, 929, 1726
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 2 cut(s) 1112, 1499
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 2 cut(s) 193, 313
FaeI CATG 6 cut(s) 647, 839, 1142, 1461, 1559, 1652
FaqI GGGAC 4 cut(s) 232, 932, 1237, 1520
FatI CATG 6 cut(s) 643, 835, 1138, 1457, 1555, 1648
FauNDI CATATG 1 cut(s) 685
FbaI TGATCA 1 cut(s) 1558
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 335, 773
FokI GGATG 5 cut(s) 119, 375, 764, 827, 1016
FriOI GRGCYC 2 cut(s) 1112, 1499
Fsp4HI GCNGC 2 cut(s) 335, 773
FspBI CTAG 3 cut(s) 497, 609, 1481
GlaI GCGC 1 cut(s) 403
GluI GCNGC 2 cut(s) 335, 773
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 6 cut(s) 255, 431, 871, 883, 1187, 1804
HapII CCGG 3 cut(s) 174, 428, 465
HgaI GACGC 3 cut(s) 167, 392, 539
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 4 cut(s) 297, 384, 402, 531
Hin1II CATG 6 cut(s) 647, 839, 1142, 1461, 1559, 1652
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 3 cut(s) 157, 1404, 1762
HindII GTYRAC 3 cut(s) 157, 1404, 1762
HinfI GANTC 6 cut(s) 14, 590, 1096, 1382, 1390, 1793
HpaI GTTAAC 2 cut(s) 1404, 1762
HpaII CCGG 3 cut(s) 174, 428, 465
HphI GGTGA 7 cut(s) 479, 650, 872, 1003, 1617, 1680, 1895
Hpy188I TCNGA 9 cut(s) 217, 341, 422, 489, 529, 1114, 1312, 1488, 1597
Hpy188III TCNNGA 8 cut(s) 11, 31, 1204, 1289, 1442, 1500, 1541, 1556
Hpy99I CGWCG 2 cut(s) 158, 161
HpyAV CCTTC 4 cut(s) 359, 588, 1226, 1317
HpyCH4III ACNGT 6 cut(s) 797, 1034, 1105, 1133, 1253, 1782
HpyCH4IV ACGT 5 cut(s) 297, 306, 747, 1068, 1851
HpyCH4V TGCA 6 cut(s) 448, 558, 835, 1153, 1652, 1865
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 158, 174, 343
HpyF3I CTNAG 2 cut(s) 1058, 1498
HpySE526I ACGT 5 cut(s) 297, 306, 747, 1068, 1851
Hsp92I GRCGYC 4 cut(s) 297, 384, 402, 531
Hsp92II CATG 6 cut(s) 647, 839, 1142, 1461, 1559, 1652
HspAI GCGC 1 cut(s) 402
KasI GGCGCC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 1558
KspAI GTTAAC 2 cut(s) 1404, 1762
Kzo9I GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
LmnI GCTCC 5 cut(s) 272, 490, 760, 1115, 1494
Lsp1109I GCAGC 1 cut(s) 759
LweI GCATC 6 cut(s) 353, 742, 994, 1246, 1467, 1631
MaeI CTAG 3 cut(s) 497, 609, 1481
MaeII ACGT 5 cut(s) 297, 306, 747, 1068, 1851
MaeIII GTNAC 6 cut(s) 785, 977, 1462, 1522, 1613, 1852
MalI GATC 8 cut(s) 219, 1016, 1287, 1485, 1539, 1560, 1748, 1876
MbiI CCGCTC 2 cut(s) 281, 337
MboI GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
MboII GAAGA 6 cut(s) 19, 278, 599, 715, 1659, 1756
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 2 cut(s) 1014, 1483
MhlI GDGCHC 2 cut(s) 1112, 1499
MlsI TGGCCA 2 cut(s) 871, 1187
MluNI TGGCCA 2 cut(s) 871, 1187
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 1 cut(s) 1384
MmeI TCCRAC 2 cut(s) 607, 613
Mox20I TGGCCA 2 cut(s) 871, 1187
MroNI GCCGGC 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 1428
MscI TGGCCA 2 cut(s) 871, 1187
MseI TTAA 4 cut(s) 1172, 1403, 1710, 1761
MslI CAYNNNNRTG 2 cut(s) 465, 1254
Msp20I TGGCCA 2 cut(s) 871, 1187
MspI CCGG 3 cut(s) 174, 428, 465
MspR9I CCNGG 3 cut(s) 399, 931, 1728
MunI CAATTG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 3 cut(s) 399, 931, 1728
MwoI GCNNNNNNNGC 4 cut(s) 44, 158, 174, 343
NaeI GCCGGC 1 cut(s) 175
NarI GGCGCC 1 cut(s) 402
NdeI CATATG 1 cut(s) 685
NdeII GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 6 cut(s) 647, 839, 1142, 1461, 1559, 1652
NlaIV GGNNCC 4 cut(s) 248, 327, 403, 1111
NmuCI GTSAC 3 cut(s) 1462, 1522, 1613
NspI RCATGY 2 cut(s) 839, 1142
OliI CACNNNNGTG 1 cut(s) 465
PagI TCATGA 1 cut(s) 1555
PceI AGGCCT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 5 cut(s) 14, 590, 1096, 1382, 1793
PinAI ACCGGT 1 cut(s) 464
PkrI GCNGC 2 cut(s) 336, 774
PleI GAGTC 1 cut(s) 1384
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 1384
Ppu21I YACGTR 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 1499
Psp6I CCWGG 3 cut(s) 397, 929, 1726
PspGI CCWGG 3 cut(s) 397, 929, 1726
PspN4I GGNNCC 4 cut(s) 248, 327, 403, 1111
PspPI GGNCC 3 cut(s) 22, 246, 1802
PstNI CAGNNNCTG 1 cut(s) 1643
PsuI RGATCY 2 cut(s) 1014, 1483
RsaI GTAC 3 cut(s) 746, 1026, 1361
RsaNI GTAC 3 cut(s) 745, 1025, 1360
RseI CAYNNNNRTG 2 cut(s) 465, 1254
SacI GAGCTC 1 cut(s) 1499
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 4 cut(s) 1172, 1403, 1710, 1761
SatI GCNGC 2 cut(s) 335, 773
Sau3AI GATC 8 cut(s) 217, 1014, 1285, 1483, 1537, 1558, 1746, 1874
Sau96I GGNCC 3 cut(s) 22, 246, 1802
SchI GAGTC 1 cut(s) 1384
ScrFI CCNGG 3 cut(s) 399, 931, 1728
SduI GDGCHC 2 cut(s) 1112, 1499
SfaNI GCATC 6 cut(s) 353, 742, 994, 1246, 1467, 1631
SfcI CTRYAG 3 cut(s) 1030, 1101, 1227
SfoI GGCGCC 1 cut(s) 403
SgrAI CRCCGGYG 1 cut(s) 464
SgrDI CGTCGACG 1 cut(s) 155
SinI GGWCC 2 cut(s) 22, 246
SmiMI CAYNNNNRTG 2 cut(s) 465, 1254
SmlI CTYRAG 1 cut(s) 1204
SmoI CTYRAG 1 cut(s) 1204
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 7 cut(s) 45, 166, 228, 279, 314, 335, 767
SspDI GGCGCC 1 cut(s) 401
SspI AATATT 3 cut(s) 1398, 1657, 1705
SspMI CTAG 3 cut(s) 497, 609, 1481
SstI GAGCTC 1 cut(s) 1499
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 397, 929, 1726
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 6 cut(s) 797, 1034, 1105, 1133, 1253, 1782
TaiI ACGT 5 cut(s) 300, 309, 750, 1071, 1854
TaqI TCGA 2 cut(s) 156, 1814
TatI WGTACW 1 cut(s) 1359
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 5 cut(s) 14, 590, 1096, 1382, 1793
Tru1I TTAA 4 cut(s) 1172, 1403, 1710, 1761
Tru9I TTAA 4 cut(s) 1172, 1403, 1710, 1761
TscAI CASTG 5 cut(s) 398, 802, 1039, 1110, 1258
TseFI GTSAC 3 cut(s) 1462, 1522, 1613
TseI GCWGC 1 cut(s) 772
Tsp45I GTSAC 3 cut(s) 1462, 1522, 1613
TspDTI ATGAA 9 cut(s) 506, 660, 831, 981, 1068, 1194, 1205, 1544, 1637
TspGWI ACGGA 4 cut(s) 35, 175, 804, 824
TspRI CASTG 5 cut(s) 398, 802, 1039, 1110, 1258
VpaK11BI GGWCC 2 cut(s) 22, 246
XapI RAATTY 5 cut(s) 515, 566, 886, 1529, 1550
XceI RCATGY 2 cut(s) 839, 1142
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 3 cut(s) 497, 609, 1481
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.