Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383177.1

Orthogroup ID

OG0017511

Physical Location & Seq

Genomic Coordinates Reverse (-)

143 .. 1156

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atggaggggcaggatcaagagaaaaaggcaacaccttcagatattgatactatgggagatactaatgtaggctttggtaaggaattgtactctcctctccaagaacctgattcacaaactccaatattgttaactgatgaaaaagccgaggaaattattcaacaacttcgtgattgtttgccgtcatgggtcactcgccagcagatgctagatctgattgggagctcaggaggggacattgttgaagcagtcactaaattttacgatcgtgaaactgaatttcatgatcaaggaattgcctctacaagtgccgtatctgtatctgagaccagctcactctgtgacacagcatcaccgacaaaagcaggttctgttcatgcaaatattaatgtttcttcaagccaagctcatatttcacccaacccaagaaatatcgttaaaagtggcatttcccctggaaaaagagggaggaagatcagtaataaagttaacaagaaagtaaagttacagtcaaaactgaattcgtgtgggccaaaacaatcgacaataacaaggttttttagtaaagttttacctgacgttacagaaagtgtagagattggatcagtaggtgaacaaaaccataaagataaaaaattaccagatcatgtcacccaatcatacaaggatgcaatagatcaatttcttcagataatagatggcaatgaatcattaaaaagctatgctggtaccattcttcaaaaggcaaatggggatattagtatggctgtggatatacattaccgtaataatgaaggcaggtctgatgagaatgaagtggagctggtggttgatgcaaaatcagttcagtccaactgtggtatagataactgttcttctgtcaaaaaaaaaattgaattagggaaaataggagtggtagctgatttgtctgtacaggggtcattaccagataacgtcgctgcaacttctgtgtcactaccaccagaaaaattcaatcctgtagatcatggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000012 GO:0000726 GO:0002237 GO:0003006 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0010154 GO:0010225 GO:0010243 GO:0015074 GO:0016070 GO:0016874 GO:0016886 GO:0022414 GO:0022616 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046677 GO:0048316 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051103 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0090351 GO:0140097 GO:1901360 GO:1901576 GO:1901652 GO:1901698 GO:1901700 GO:1904975 GO:2000683 GO:2000685

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DRMBL

Protein Analysis

337

Amino Acids

36.43

Weight (kDa)

5.28

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17360
rosa_chinensis	RchiOBHm_Chr3g0493941
rosa_laevigata	RLG00000022689
rosa_multiflora	Rmu_co8383177.1_g000001 Rmu_sc0000568.1_g000023 Rmu_sc0010399.1_g000002
rosa_samantha	Rh3AG313100 Rh3BG348300 Rh3BG349300 Rh3CG346100 Rh3DG348600
rosa_wichuraiana	Rw3G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	356, 789
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AclWI	GGATC	2 cut(s)	21, 610
AcsI	RAATTY	4 cut(s)	257, 278, 520, 989
AcuI	CTGAAG	2 cut(s)	21, 671
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	3 cut(s)	89, 730, 933
AgsI	TTSAA	6 cut(s)	161, 245, 399, 740, 896, 994
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	6 cut(s)	225, 333, 407, 720, 823, 920
AluI	AGCT	6 cut(s)	225, 333, 407, 720, 823, 920
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	21, 610
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	959
ApoI	RAATTY	4 cut(s)	257, 278, 520, 989
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	156
Asp718I	GGTACC	1 cut(s)	728
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	4 cut(s)	345, 408, 623, 643
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BanI	GGYRCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	946
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	2 cut(s)	166, 296
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	999
BfuAI	ACCTGC	2 cut(s)	356, 789
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	1 cut(s)	960
BlsI	GCNGC	1 cut(s)	961
Bme1390I	CCNGG	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	4 cut(s)	195, 359, 658, 823
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	147, 454
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	147, 454
BseGI	GGATG	1 cut(s)	673
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	240, 315
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	946
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	532
BshNI	GGYRCC	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	532
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	931
Bsp143I	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	2 cut(s)	239, 316
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	730
BspMI	ACCTGC	2 cut(s)	356, 789
BspPI	GGATC	2 cut(s)	21, 610
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	709
BsrGI	TGTACA	1 cut(s)	931
BssECI	CCNNGG	2 cut(s)	147, 454
BssMI	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	510, 785, 857, 872
BstAUI	TGTACA	1 cut(s)	931
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	226, 324
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	9 cut(s)	16, 214, 268, 289, 477, 605, 646, 679, 1006
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
BstMCI	CGRYCG	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	999
BstV1I	GCAGC	1 cut(s)	946
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	673
BveI	ACCTGC	2 cut(s)	356, 789
Cac8I	GCNNGC	1 cut(s)	200
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	3 cut(s)	88, 729, 932
CviAII	CATG	5 cut(s)	186, 284, 377, 647, 1007
CviQI	GTAC	3 cut(s)	88, 729, 932
DdeI	CTNAG	2 cut(s)	226, 324
DpnI	GATC	9 cut(s)	15, 213, 267, 288, 476, 604, 645, 678, 1005
DpnII	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
DraIII	CACNNNGTG	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	21, 671
EcoICRI	GAGCTC	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	5 cut(s)	189, 287, 380, 650, 1010
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	185, 283, 376, 646, 1006
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	960
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	960
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	960
HaeIII	GGCC	1 cut(s)	532
Hin1II	CATG	5 cut(s)	189, 287, 380, 650, 1010
HincII	GTYRAC	2 cut(s)	132, 490
HindII	GTYRAC	2 cut(s)	132, 490
HinfI	GANTC	2 cut(s)	110, 707
HpaI	GTTAAC	2 cut(s)	132, 490
HphI	GGTGA	4 cut(s)	345, 408, 623, 643
Hpy166II	GTNNAC	3 cut(s)	132, 490, 614
Hpy188I	TCNGA	5 cut(s)	40, 216, 325, 690, 805
Hpy188III	TCNNGA	5 cut(s)	17, 170, 228, 269, 284
Hpy8I	GTNNAC	3 cut(s)	132, 490, 614
Hpy99I	CGWCG	1 cut(s)	959
HpyAV	CCTTC	2 cut(s)	45, 788
HpyCH4III	ACNGT	4 cut(s)	510, 785, 857, 872
HpyCH4IV	ACGT	2 cut(s)	579, 954
HpyCH4V	TGCA	4 cut(s)	380, 671, 836, 962
HpyF3I	CTNAG	2 cut(s)	226, 324
HpySE526I	ACGT	2 cut(s)	579, 954
Hsp92II	CATG	5 cut(s)	189, 287, 380, 650, 1010
KpnI	GGTACC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	286
KspAI	GTTAAC	2 cut(s)	132, 490
Kzo9I	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
LmnI	GCTCC	2 cut(s)	222, 820
Lsp1109I	GCAGC	1 cut(s)	946
LweI	GCATC	4 cut(s)	195, 359, 658, 823
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	579, 954
MaeIII	GTNAC	7 cut(s)	190, 250, 341, 504, 580, 649, 972
MalI	GATC	9 cut(s)	15, 213, 267, 288, 476, 604, 645, 678, 1005
MboI	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
MboII	GAAGA	5 cut(s)	387, 484, 677, 728, 867
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	876
MnlI	CCTC	6 cut(s)	105, 142, 224, 310, 458, 462
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	5 cut(s)	131, 387, 438, 489, 713
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
NdeII	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
NlaIII	CATG	5 cut(s)	189, 287, 380, 650, 1010
NlaIV	GGNNCC	1 cut(s)	730
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	5 cut(s)	190, 250, 341, 649, 972
PagI	TCATGA	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	110, 707
PkrI	GCNGC	1 cut(s)	961
Ple19I	CGATCG	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	89, 730, 933
RsaNI	GTAC	3 cut(s)	88, 729, 932
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	131, 387, 438, 489, 713
SatI	GCNGC	1 cut(s)	960
Sau3AI	GATC	9 cut(s)	13, 211, 265, 286, 474, 602, 643, 676, 1003
Sau96I	GGNCC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	4 cut(s)	195, 359, 658, 823
SfcI	CTRYAG	1 cut(s)	999
SspI	AATATT	2 cut(s)	126, 385
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	4 cut(s)	510, 785, 857, 872
TaiI	ACGT	2 cut(s)	582, 957
TaqI	TCGA	1 cut(s)	542
TatI	WGTACW	2 cut(s)	87, 931
TfiI	GAWTC	2 cut(s)	110, 707
Tru1I	TTAA	5 cut(s)	131, 387, 438, 489, 713
Tru9I	TTAA	5 cut(s)	131, 387, 438, 489, 713
TseFI	GTSAC	5 cut(s)	190, 250, 341, 649, 972
TseI	GCWGC	1 cut(s)	959
Tsp45I	GTSAC	5 cut(s)	190, 250, 341, 649, 972
TspDTI	ATGAA	6 cut(s)	153, 272, 365, 720, 807, 828
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	4 cut(s)	257, 278, 520, 989
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.