DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17360 |
| rosa_chinensis | RchiOBHm_Chr3g0493941 |
| rosa_laevigata | RLG00000022689 |
| rosa_multiflora | Rmu_co8383177.1_g000001 Rmu_sc0000568.1_g000023 Rmu_sc0010399.1_g000002 |
| rosa_samantha | Rh3AG313100 Rh3BG348300 Rh3BG349300 Rh3CG346100 Rh3DG348600 |
| rosa_wichuraiana | Rw3G027410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 494 |
| AccB1I | GGYRCC | 1 cut(s) | 494 |
| AclWI | GGATC | 1 cut(s) | 111 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 347, 367 |
| AcuI | CTGAAG | 1 cut(s) | 111 |
| AdeI | CACNNNGTG | 1 cut(s) | 430 |
| AfaI | GTAC | 3 cut(s) | 179, 496, 669 |
| AgsI | TTSAA | 4 cut(s) | 251, 335, 506, 632 |
| AluBI | AGCT | 5 cut(s) | 315, 422, 486, 559, 656 |
| AluI | AGCT | 5 cut(s) | 315, 422, 486, 559, 656 |
| Alw21I | GWGCWC | 1 cut(s) | 317 |
| Alw26I | GTCTC | 1 cut(s) | 409 |
| AlwI | GGATC | 1 cut(s) | 111 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApoI | RAATTY | 2 cut(s) | 347, 367 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 246 |
| Asp718I | GGTACC | 1 cut(s) | 494 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 141, 174 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 494 |
| BanII | GRGCYC | 1 cut(s) | 317 |
| Bbv12I | GWGCWC | 1 cut(s) | 317 |
| BccI | CCATC | 2 cut(s) | 85, 458 |
| BceAI | ACGGC | 2 cut(s) | 256, 385 |
| BclI | TGATCA | 1 cut(s) | 375 |
| BcoDI | GTCTC | 1 cut(s) | 409 |
| BfaI | CTAG | 1 cut(s) | 299 |
| BfmI | CTRYAG | 2 cut(s) | 45, 735 |
| BglII | AGATCT | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 496 |
| BmsI | GCATC | 3 cut(s) | 64, 285, 448 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 406, 438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 316 |
| BpuEI | CTTGAG | 1 cut(s) | 43 |
| BsaI | GGTCTC | 1 cut(s) | 409 |
| Bse3DI | GCAATG | 1 cut(s) | 475 |
| BseMI | GCAATG | 1 cut(s) | 475 |
| BseMII | CTCAG | 1 cut(s) | 330 |
| BseRI | GAGGAG | 1 cut(s) | 174 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshNI | GGYRCC | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 1 cut(s) | 317 |
| BslFI | GGGAC | 2 cut(s) | 55, 111 |
| BsmAI | GTCTC | 1 cut(s) | 409 |
| BsmFI | GGGAC | 2 cut(s) | 55, 111 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 409 |
| Bsp1286I | GDGCHC | 1 cut(s) | 317 |
| Bsp1407I | TGTACA | 1 cut(s) | 667 |
| Bsp143I | GATC | 3 cut(s) | 103, 301, 375 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 329 |
| BspHI | TCATGA | 1 cut(s) | 372 |
| BspLI | GGNNCC | 1 cut(s) | 496 |
| BspPI | GGATC | 1 cut(s) | 111 |
| BspT107I | GGYRCC | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 409 |
| BsrDI | GCAATG | 1 cut(s) | 475 |
| BsrGI | TGTACA | 1 cut(s) | 667 |
| BssMI | GATC | 3 cut(s) | 103, 301, 375 |
| Bst4CI | ACNGT | 3 cut(s) | 542, 593, 608 |
| BstAUI | TGTACA | 1 cut(s) | 667 |
| BstC8I | GCNNGC | 1 cut(s) | 290 |
| BstDEI | CTNAG | 1 cut(s) | 316 |
| BstKTI | GATC | 3 cut(s) | 106, 304, 378 |
| BstMAI | GTCTC | 1 cut(s) | 409 |
| BstMBI | GATC | 3 cut(s) | 103, 301, 375 |
| BstSFI | CTRYAG | 2 cut(s) | 45, 735 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsI | GCAGTG | 1 cut(s) | 710 |
| BtsIMutI | CAGTG | 2 cut(s) | 69, 710 |
| Cac8I | GCNNGC | 1 cut(s) | 290 |
| CciI | TCATGA | 1 cut(s) | 372 |
| Csp6I | GTAC | 3 cut(s) | 178, 495, 668 |
| CviAII | CATG | 2 cut(s) | 276, 373 |
| CviJI | RGCY | 8 cut(s) | 5, 162, 315, 422, 486, 533, 559, 656 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 162, 315, 422, 486, 533, 559, 656 |
| CviQI | GTAC | 3 cut(s) | 178, 495, 668 |
| DdeI | CTNAG | 1 cut(s) | 316 |
| DpnI | GATC | 3 cut(s) | 105, 303, 377 |
| DpnII | GATC | 3 cut(s) | 103, 301, 375 |
| DraIII | CACNNNGTG | 1 cut(s) | 430 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 1 cut(s) | 315 |
| Eco24I | GRGCYC | 1 cut(s) | 317 |
| Eco31I | GGTCTC | 1 cut(s) | 409 |
| Eco53kI | GAGCTC | 1 cut(s) | 315 |
| Eco57I | CTGAAG | 1 cut(s) | 111 |
| EcoICRI | GAGCTC | 1 cut(s) | 315 |
| EcoT38I | GRGCYC | 1 cut(s) | 317 |
| FaeI | CATG | 2 cut(s) | 279, 376 |
| FaiI | YATR | 7 cut(s) | 143, 277, 374, 489, 530, 599, 744 |
| FaqI | GGGAC | 2 cut(s) | 55, 111 |
| FatI | CATG | 2 cut(s) | 275, 372 |
| FbaI | TGATCA | 1 cut(s) | 375 |
| FriOI | GRGCYC | 1 cut(s) | 317 |
| FspBI | CTAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 279, 376 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HinfI | GANTC | 1 cut(s) | 200 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 3 cut(s) | 67, 222, 538 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 306 |
| Hpy188III | TCNNGA | 6 cut(s) | 22, 107, 318, 373, 414, 503 |
| Hpy8I | GTNNAC | 3 cut(s) | 67, 222, 538 |
| Hpy99I | CGWCG | 1 cut(s) | 695 |
| HpyAV | CCTTC | 2 cut(s) | 44, 135 |
| HpyCH4III | ACNGT | 3 cut(s) | 542, 593, 608 |
| HpyCH4IV | ACGT | 1 cut(s) | 690 |
| HpyCH4V | TGCA | 1 cut(s) | 698 |
| HpyF3I | CTNAG | 1 cut(s) | 316 |
| HpySE526I | ACGT | 1 cut(s) | 690 |
| Hsp92II | CATG | 2 cut(s) | 279, 376 |
| KpnI | GGTACC | 1 cut(s) | 498 |
| Ksp22I | TGATCA | 1 cut(s) | 375 |
| Kzo9I | GATC | 3 cut(s) | 103, 301, 375 |
| LmnI | GCTCC | 2 cut(s) | 312, 556 |
| LweI | GCATC | 3 cut(s) | 64, 285, 448 |
| MaeI | CTAG | 1 cut(s) | 299 |
| MaeII | ACGT | 1 cut(s) | 690 |
| MaeIII | GTNAC | 4 cut(s) | 280, 340, 430, 708 |
| MalI | GATC | 3 cut(s) | 105, 303, 377 |
| MboI | GATC | 3 cut(s) | 103, 301, 375 |
| MboII | GAAGA | 1 cut(s) | 603 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MhlI | GDGCHC | 1 cut(s) | 317 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 9 cut(s) | 173, 243, 262, 347, 367, 383, 473, 627, 632 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 612 |
| MnlI | CCTC | 7 cut(s) | 18, 47, 88, 195, 232, 314, 399 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 1 cut(s) | 246 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 72 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| NdeII | GATC | 3 cut(s) | 103, 301, 375 |
| NlaIII | CATG | 2 cut(s) | 279, 376 |
| NlaIV | GGNNCC | 1 cut(s) | 496 |
| NmuCI | GTSAC | 4 cut(s) | 280, 340, 430, 708 |
| PagI | TCATGA | 1 cut(s) | 372 |
| PdmI | GAANNNNTTC | 1 cut(s) | 246 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| Psp124BI | GAGCTC | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 1 cut(s) | 496 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| RsaI | GTAC | 3 cut(s) | 179, 496, 669 |
| RsaNI | GTAC | 3 cut(s) | 178, 495, 668 |
| RseI | CAYNNNNRTG | 1 cut(s) | 72 |
| SacI | GAGCTC | 1 cut(s) | 317 |
| SaqAI | TTAA | 1 cut(s) | 479 |
| Sau3AI | GATC | 3 cut(s) | 103, 301, 375 |
| SduI | GDGCHC | 1 cut(s) | 317 |
| SfaNI | GCATC | 3 cut(s) | 64, 285, 448 |
| SfcI | CTRYAG | 2 cut(s) | 45, 735 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 72 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse9I | AATT | 9 cut(s) | 173, 243, 262, 347, 367, 383, 473, 627, 632 |
| SspI | AATATT | 1 cut(s) | 216 |
| SspMI | CTAG | 1 cut(s) | 299 |
| SstI | GAGCTC | 1 cut(s) | 317 |
| TaaI | ACNGT | 3 cut(s) | 542, 593, 608 |
| TaiI | ACGT | 1 cut(s) | 693 |
| TaqI | TCGA | 1 cut(s) | 413 |
| TasI | AATT | 9 cut(s) | 173, 243, 262, 347, 367, 383, 473, 627, 632 |
| TatI | WGTACW | 2 cut(s) | 177, 667 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 1 cut(s) | 479 |
| Tru9I | TTAA | 1 cut(s) | 479 |
| TscAI | CASTG | 2 cut(s) | 76, 717 |
| TseFI | GTSAC | 4 cut(s) | 280, 340, 430, 708 |
| Tsp45I | GTSAC | 4 cut(s) | 280, 340, 430, 708 |
| TspDTI | ATGAA | 5 cut(s) | 23, 243, 361, 486, 564 |
| TspRI | CASTG | 2 cut(s) | 76, 717 |
| XapI | RAATTY | 2 cut(s) | 347, 367 |
| XmnI | GAANNNNTTC | 1 cut(s) | 246 |
| XspI | CTAG | 1 cut(s) | 299 |