AT5G17590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015249
Physical Location & Seq
Reverse (-)
5797184 .. 5798027
844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17590.1

Sequence Viewer

Length: 579 bp
ATGGATCAGAGAAAAGGTGATCCAAGAATATACATTATCACTGTTCTCTTCCTTTCATGTATCCTCATAGGAGGAGTCCTTTTAGGACTTTACCTGGTCCGTTCTGATCCGAACCCTCTGTTTCTACAAGCGGGTATGGTCTTTGTTGGTGTCCCTTGGCTCTTTTGGTTCTTGGCTTACGTTTACTCCTGCGTCCTCAAACCTTGCGTCATCTTTGTTAGCCAGAGCACCATCTTTAATAGCAAGAGCGTTACCAGTTTCGATCCGGAGAAAGGCGATCCTAACAAGGCTCCGGAAACCGTCACGACAACTTCGGATCCGGCGCCGAGGAATTCACCGAGGGAAGGTGAGAAGCACGTGCAATTCGGGAATGTGGTGGTTCTTGGGGATGAAGAAGGTGGAAAAGAGGAAGATCACAACGAGAGTAGTTCTAATAATCTGATTCAGGATCATATGCGAATCGAAGAAGAAGAAGATCAAGAAAATGGTAGATCGAATTCAAAGAGCGATGATGATGAGAGTAGTGTCGATGAGGACTGCGATAGGACTCCATTAAGAGTATCGAACGGAAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.4

Weight (kDa)

4.54

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17590
fragaria_vesca FvH4_7g07110
malus_domestica MD02G1239600.v1.1 MD07G1077000.v1.1
prunus_persica Prupe.2G098000_v2.0.a1
pyrus_communis pycom02g20520 pycom07g06050
rosa_chinensis RchiOBHm_Chr1g0337051
rosa_laevigata RLG00000029308
rosa_multiflora Rmu_sc0040337.1_g000001
rosa_roxburghii Rroxscaffold_4G00314990
rosa_rugosa Rorug01G0130800
rosa_samantha Rh1AG151500 Rh1BG120300 Rh1CG142700 Rh1DG158700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccIII TCCGGA 2 cut(s) 265, 292
AciI CCGC 1 cut(s) 131
AclWI GGATC 8 cut(s) 12, 14, 101, 257, 272, 311, 324, 456
AcsI RAATTY 2 cut(s) 331, 496
AcvI CACGTG 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 272, 344
AgsI TTSAA 1 cut(s) 501
AjnI CCWGG 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 230
AlwI GGATC 8 cut(s) 12, 14, 101, 257, 272, 311, 324, 456
Aor13HI TCCGGA 2 cut(s) 265, 292
ApoI RAATTY 2 cut(s) 331, 496
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 3 cut(s) 29, 327, 359
AvaII GGWCC 1 cut(s) 97
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 322
BbrPI CACGTG 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 230
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 326
BfuI GTATCC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 3 cut(s) 291, 318, 324
BmrFI CCNGG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 3 cut(s) 155, 326, 338
BsaWI WCCGGW 2 cut(s) 265, 292
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 344
Bse1I ACTGG 1 cut(s) 255
BseAI TCCGGA 2 cut(s) 265, 292
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 155, 326, 338
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 2 cut(s) 272, 344
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 3 cut(s) 266, 293, 320
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 272, 344
BsmFI GGGAC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 230
Bsp13I TCCGGA 2 cut(s) 265, 292
BspACI CCGC 1 cut(s) 131
BspEI TCCGGA 2 cut(s) 265, 292
BspLI GGNNCC 3 cut(s) 291, 318, 324
BspPI GGATC 8 cut(s) 12, 14, 101, 257, 272, 311, 324, 456
BspT107I GGYRCC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 3 cut(s) 155, 326, 338
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 43, 301
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 358
BstF5I GGATG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 39
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 2 cut(s) 181, 196
CsiI ACCWGGT 1 cut(s) 93
CviAII CATG 1 cut(s) 57
CviJI RGCY 4 cut(s) 160, 176, 222, 290
CviKI_1 RGCY 4 cut(s) 160, 176, 222, 290
DinI GGCGCC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 97
Eco72I CACGTG 1 cut(s) 358
EcoRI GAATTC 2 cut(s) 331, 496
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 324
EheI GGCGCC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 60
FaiI YATR 6 cut(s) 31, 58, 68, 137, 453, 455
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 56
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 1 cut(s) 453
FokI GGATG 1 cut(s) 401
GlaI GCGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 326
HapII CCGG 3 cut(s) 266, 293, 320
HgaI GACGC 2 cut(s) 181, 196
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 4 cut(s) 75, 442, 459, 547
HpaII CCGG 3 cut(s) 266, 293, 320
HphI GGTGA 3 cut(s) 29, 327, 359
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 5 cut(s) 9, 106, 111, 316, 441
Hpy188III TCNNGA 6 cut(s) 266, 293, 304, 367, 446, 479
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 338, 389
HpyCH4III ACNGT 2 cut(s) 43, 301
HpyCH4IV ACGT 2 cut(s) 180, 357
HpyCH4V TGCA 1 cut(s) 361
HpySE526I ACGT 2 cut(s) 180, 357
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 323
KasI GGCGCC 1 cut(s) 322
Kpn2I TCCGGA 2 cut(s) 265, 292
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 9 cut(s) 80, 107, 202, 236, 268, 279, 306, 333, 431
MabI ACCWGGT 1 cut(s) 93
MaeII ACGT 2 cut(s) 180, 357
MaeIII GTNAC 2 cut(s) 250, 301
MboII GAAGA 7 cut(s) 40, 404, 422, 476, 479, 482, 485
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 3 cut(s) 331, 362, 496
Mly113I GGCGCC 1 cut(s) 323
MlyI GAGTC 2 cut(s) 84, 541
MnlI CCTC 8 cut(s) 65, 74, 126, 206, 321, 333, 400, 526
MroI TCCGGA 2 cut(s) 265, 292
MseI TTAA 2 cut(s) 237, 554
MspI CCGG 3 cut(s) 266, 293, 320
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
NarI GGCGCC 1 cut(s) 323
NdeI CATATG 1 cut(s) 453
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 3 cut(s) 291, 318, 324
NmeAIII GCCGAG 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 442, 459
PleI GAGTC 2 cut(s) 83, 541
PluTI GGCGCC 1 cut(s) 326
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
PpsI GAGTC 2 cut(s) 83, 541
Ppu21I YACGTR 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 291, 318, 324
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 316
SaqAI TTAA 2 cut(s) 237, 554
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 2 cut(s) 84, 541
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 230
SetI ASST 7 cut(s) 19, 96, 183, 205, 349, 360, 400
SexAI ACCWGGT 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 324
SinI GGWCC 1 cut(s) 97
Sse9I AATT 3 cut(s) 331, 362, 496
SsiI CCGC 1 cut(s) 131
SspDI GGCGCC 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 43, 301
TaiI ACGT 2 cut(s) 183, 360
TaqI TCGA 5 cut(s) 261, 462, 494, 528, 563
TasI AATT 3 cut(s) 331, 362, 496
TfiI GAWTC 2 cut(s) 442, 459
Tru1I TTAA 2 cut(s) 237, 554
Tru9I TTAA 2 cut(s) 237, 554
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 45, 405
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 2 cut(s) 331, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.