FvH4_7g07110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015249
Physical Location & Seq
Reverse (-)
7069722 .. 7070288
567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07110.t1

Sequence Viewer

Length: 567 bp
ATGGAGGAAAGAAAAGGAGATGTTAGAGTCTCTATCATCTCCGCGCTCTTCTTCACCTGCATTGTGGCTGGAGCGGTCTTTCTTTTCCTTTATATGCTTCTCCCTGGTGAGAAAGCCAAGCTATGGTATCCCATTGTAGGTCTGATACTTGTGGCCGTTCCATGGCTTTTCTGGATCGTGACATGCGCCTACAGGTGCTTCAAACCGGGGGATAGCTGCACACAAATCGATGGAAGTGGCCGGTATGTCAAGGCATCAGGAGGAGGAGGAGGAGGAAGCAGCAGGCACACAGCCACCACGGCCCCAGCCACGAGTAGTGTACCAACAATTGCCAATGCATCATCAGCTGCAGGGTCCCCTGTGAATTCCCCCAGCGGCAATCAGCGCCATGTGCAGTTTGCCGGGGTTGTTATGATGGGAAATGATGATGGAAATAGAGGCCAAACCCAAAAGGGACCTGAGGCAGCTGGTGCAGAATATCGAACTATAGATGTGGAGGATCATAGTGGACAAAATGGTTCAGTTGGTTCTACAGAAAGTGAAATGCCATTGAGATTAACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

19.72

Weight (kDa)

6.82

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17590
fragaria_vesca FvH4_7g07110
malus_domestica MD02G1239600.v1.1 MD07G1077000.v1.1
prunus_persica Prupe.2G098000_v2.0.a1
pyrus_communis pycom02g20520 pycom07g06050
rosa_chinensis RchiOBHm_Chr1g0337051
rosa_laevigata RLG00000029308
rosa_multiflora Rmu_sc0040337.1_g000001
rosa_roxburghii Rroxscaffold_4G00314990
rosa_rugosa Rorug01G0130800
rosa_samantha Rh1AG151500 Rh1BG120300 Rh1CG142700 Rh1DG158700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 42, 74, 375
AclWI GGATC 2 cut(s) 182, 507
AcoI YGGCCR 2 cut(s) 153, 238
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 162
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 4 cut(s) 121, 216, 347, 467
AluI AGCT 4 cut(s) 121, 216, 347, 467
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 182, 507
AoxI GGCC 4 cut(s) 153, 238, 300, 439
ApeKI GCWGC 4 cut(s) 216, 279, 347, 464
ApoI RAATTY 1 cut(s) 364
AspLEI GCGC 3 cut(s) 46, 188, 387
AspS9I GGNCC 3 cut(s) 301, 354, 455
AsuC2I CCSGG 2 cut(s) 207, 403
AsuHPI GGTGA 2 cut(s) 46, 119
AvaII GGWCC 2 cut(s) 354, 455
AxyI CCTNAGG 1 cut(s) 459
BauI CACGAG 1 cut(s) 310
BbvI GCAGC 4 cut(s) 203, 291, 334, 476
BccI CCATC 3 cut(s) 224, 409, 422
BceAI ACGGC 2 cut(s) 140, 315
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 138
BcnI CCSGG 2 cut(s) 207, 403
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 4 cut(s) 190, 348, 486, 531
BfoI RGCGCY 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 65
BfuI GTATCC 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 5 cut(s) 217, 280, 348, 376, 465
BlsI GCNGC 5 cut(s) 218, 281, 349, 377, 466
Bme1390I CCNGG 3 cut(s) 105, 207, 403
Bme18I GGWCC 2 cut(s) 354, 455
BmgT120I GGNCC 3 cut(s) 301, 354, 455
BmiI GGNNCC 4 cut(s) 303, 355, 356, 456
BmrFI CCNGG 3 cut(s) 105, 207, 403
BmsI GCATC 2 cut(s) 263, 347
BpmI CTGGAG 1 cut(s) 90
BpuMI CCSGG 2 cut(s) 207, 403
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 5 cut(s) 103, 161, 206, 297, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 162
Bse118I RCCGGY 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 5 cut(s) 103, 161, 206, 297, 402
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 162
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 4 cut(s) 276, 279, 282, 285
BseXI GCAGC 4 cut(s) 203, 291, 334, 476
BseYI CCCAGC 2 cut(s) 304, 371
BsgI GTGCAG 3 cut(s) 202, 413, 492
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 4 cut(s) 155, 240, 302, 441
BshVI ATCGAT 1 cut(s) 228
BsiSI CCGG 3 cut(s) 206, 241, 402
BslFI GGGAC 2 cut(s) 340, 468
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 162
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 340, 468
BsnI GGCC 4 cut(s) 155, 240, 302, 441
Bsp143I GATC 2 cut(s) 174, 499
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 3 cut(s) 42, 74, 375
BspANI GGCC 4 cut(s) 155, 240, 302, 441
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 4 cut(s) 303, 355, 356, 456
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 182, 507
BspQI GCTCTTC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 5 cut(s) 103, 161, 206, 297, 402
BssMI GATC 2 cut(s) 174, 499
BssSI CACGAG 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 2 cut(s) 161, 297
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 3 cut(s) 46, 188, 387
BstKTI GATC 2 cut(s) 177, 502
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 174, 499
BstMWI GCNNNNNNNGC 5 cut(s) 299, 344, 384, 391, 470
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 103, 205, 401
BstSFI CTRYAG 4 cut(s) 190, 348, 486, 531
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 4 cut(s) 203, 291, 334, 476
Bsu15I ATCGAT 1 cut(s) 228
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 4 cut(s) 155, 240, 302, 441
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 161, 297
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 3 cut(s) 46, 188, 387
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 3 cut(s) 301, 354, 455
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 320
CviAII CATG 3 cut(s) 162, 183, 389
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 1 cut(s) 459
DpnI GATC 2 cut(s) 176, 501
DpnII GATC 2 cut(s) 174, 499
EaeI YGGCCR 2 cut(s) 153, 238
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 354, 455
Eco81I CCTNAGG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 354, 455
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 165, 186, 392
FaqI GGGAC 2 cut(s) 340, 468
FatI CATG 3 cut(s) 161, 182, 388
Fnu4HI GCNGC 5 cut(s) 217, 280, 348, 376, 465
Fsp4HI GCNGC 5 cut(s) 217, 280, 348, 376, 465
GlaI GCGC 3 cut(s) 45, 187, 386
GluI GCNGC 5 cut(s) 217, 280, 348, 376, 465
GsaI CCCAGC 2 cut(s) 308, 375
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 4 cut(s) 155, 240, 302, 441
HapII CCGG 3 cut(s) 206, 241, 402
HhaI GCGC 3 cut(s) 46, 188, 387
Hin1II CATG 3 cut(s) 165, 186, 392
Hin6I GCGC 3 cut(s) 44, 186, 385
HinP1I GCGC 3 cut(s) 44, 186, 385
HinfI GANTC 1 cut(s) 27
HpaII CCGG 3 cut(s) 206, 241, 402
HphI GGTGA 2 cut(s) 46, 119
Hpy166II GTNNAC 2 cut(s) 320, 509
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 172, 178, 258
Hpy8I GTNNAC 2 cut(s) 320, 509
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 6 cut(s) 60, 219, 338, 350, 394, 473
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 344, 384, 391, 470
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 3 cut(s) 165, 186, 392
HspAI GCGC 3 cut(s) 44, 186, 385
KflI GGGWCCC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 174, 499
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 4 cut(s) 203, 291, 334, 476
LweI GCATC 2 cut(s) 263, 347
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 176, 501
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 174, 499
MboII GAAGA 2 cut(s) 40, 43
MfeI CAATTG 1 cut(s) 327
MluCI AATT 2 cut(s) 327, 364
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 8 cut(s) 254, 257, 260, 263, 266, 431, 454, 490
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 1 cut(s) 557
MspA1I CMGCKG 3 cut(s) 347, 375, 467
MspI CCGG 3 cut(s) 206, 241, 402
MspR9I CCNGG 3 cut(s) 105, 207, 403
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 299, 344, 384, 391, 470
NciI CCSGG 2 cut(s) 207, 403
NcoI CCATGG 1 cut(s) 161
NdeII GATC 2 cut(s) 174, 499
NlaIII CATG 3 cut(s) 165, 186, 392
NlaIV GGNNCC 4 cut(s) 303, 355, 356, 456
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 5 cut(s) 218, 281, 349, 377, 466
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 2 cut(s) 354, 455
Psp5II RGGWCCY 2 cut(s) 354, 455
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 2 cut(s) 304, 371
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 303, 355, 356, 456
PspPI GGNCC 3 cut(s) 301, 354, 455
PspPPI RGGWCCY 2 cut(s) 354, 455
PstI CTGCAG 1 cut(s) 352
PvuII CAGCTG 2 cut(s) 347, 467
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 5 cut(s) 217, 280, 348, 376, 465
Sau3AI GATC 2 cut(s) 174, 499
Sau96I GGNCC 3 cut(s) 301, 354, 455
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 105, 207, 403
SetI ASST 8 cut(s) 59, 123, 142, 197, 218, 349, 460, 469
SfaNI GCATC 2 cut(s) 263, 347
SfcI CTRYAG 4 cut(s) 190, 348, 486, 531
SinI GGWCC 2 cut(s) 354, 455
Sse9I AATT 2 cut(s) 327, 364
SsiI CCGC 3 cut(s) 42, 74, 375
StyD4I CCNGG 3 cut(s) 103, 205, 401
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 2 cut(s) 228, 481
TasI AATT 2 cut(s) 327, 364
TauI GCSGC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 4 cut(s) 216, 279, 347, 464
Tsp45I GTSAC 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 354, 455
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.