Rroxscaffold_4G00314990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015249
Physical Location & Seq
Forward (+)
39209483 .. 39210416
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314990.1

Sequence Viewer

Length: 675 bp
ATGGAGCAAAGAAAAAGAGATGCTAGAGTCTCTATCATCTCCGCGATCTTCTTCACCTGCATTGTGGCTGGAGGAGTCTTTCTATTCCTTTACATGCTTCTCCCTGGCGCACAGGCCAAGCCATGGTATCCCATTGTAGGTTTGATACTTGTAGCCGTTCCATGGCTTTTCTGGATCCTGACATGCGCCTACCGGTGCTTCAAACCGGGGGATAGCAGCACACAAATCGATGGCAGTGGCCGGTATGTCAAGGCAGGAGGAGGAGGCAGCAGCCGTACAGCCACCACGCCCCCAACCACGAGTGGTGCACCAACAATTGCCAATGCATCATCAGCTGCAGGGTCCCCTGTGAATTCCCCCGGTGGCGATCAGCGCCATGTGCAGTTTGCCGGGGTTGTTGCCATGGGAAGTGATGAAGGAAATGGTGGCCAGACCCAAAAGGGACCTGGGGCAGCTGCTGCACAATATCATACCATAAATTTGGACGATCATAGTGGGACAAATGGTTCAGTTGGTTCTACAGAAAGTGAAAGGCCATTGAGATTAACGTCTGGCGTGACTGTCAAGGATGACCGCAGAAAAGGTGATGAGATGAAATGGTACAAGGTAAATTGCAACAATATGATATTTGTTTATACTAGCATGAGACGATTAGATCGAAGTGGAACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

23.84

Weight (kDa)

9.48

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17590
fragaria_vesca FvH4_7g07110
malus_domestica MD02G1239600.v1.1 MD07G1077000.v1.1
prunus_persica Prupe.2G098000_v2.0.a1
pyrus_communis pycom02g20520 pycom07g06050
rosa_chinensis RchiOBHm_Chr1g0337051
rosa_laevigata RLG00000029308
rosa_multiflora Rmu_sc0040337.1_g000001
rosa_roxburghii Rroxscaffold_4G00314990
rosa_rugosa Rorug01G0130800
rosa_samantha Rh1AG151500 Rh1BG120300 Rh1CG142700 Rh1DG158700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 123
AccII CGCG 1 cut(s) 44
AciI CCGC 2 cut(s) 42, 574
AclWI GGATC 2 cut(s) 169, 182
AcoI YGGCCR 2 cut(s) 238, 427
AcsI RAATTY 2 cut(s) 352, 478
AfaI GTAC 2 cut(s) 277, 602
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 162
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 2 cut(s) 103, 445
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 2 cut(s) 335, 455
AluI AGCT 2 cut(s) 335, 455
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 34, 640
Alw44I GTGCAC 1 cut(s) 306
AlwI GGATC 2 cut(s) 169, 182
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 4 cut(s) 114, 238, 427, 533
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 7 cut(s) 216, 267, 270, 335, 452, 455, 458
ApoI RAATTY 2 cut(s) 352, 478
AsiGI ACCGGT 1 cut(s) 192
AspLEI GCGC 3 cut(s) 110, 188, 375
AspS9I GGNCC 2 cut(s) 342, 443
AsuC2I CCSGG 3 cut(s) 207, 360, 391
AsuHPI GGTGA 2 cut(s) 46, 596
AvaII GGWCC 2 cut(s) 342, 443
BaeGI GKGCMC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 429
BamHI GGATCC 1 cut(s) 174
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
BccI CCATC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 140, 258
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 105, 447
BciVI GTATCC 1 cut(s) 138
BcnI CCSGG 3 cut(s) 207, 360, 391
BcoDI GTCTC 2 cut(s) 34, 640
BfaI CTAG 2 cut(s) 24, 639
BfmI CTRYAG 2 cut(s) 336, 519
BfoI RGCGCY 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 65
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
BlsI GCNGC 7 cut(s) 218, 269, 272, 337, 454, 457, 460
Bme1390I CCNGG 5 cut(s) 105, 207, 360, 391, 447
Bme18I GGWCC 2 cut(s) 342, 443
BmgT120I GGNCC 2 cut(s) 342, 443
BmiI GGNNCC 5 cut(s) 176, 343, 344, 444, 667
BmrFI CCNGG 5 cut(s) 105, 207, 360, 391, 447
BmsI GCATC 2 cut(s) 10, 335
BpmI CTGGAG 1 cut(s) 90
BpuMI CCSGG 3 cut(s) 207, 360, 391
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 8 cut(s) 103, 122, 161, 206, 358, 390, 402, 446
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 162
Bse118I RCCGGY 2 cut(s) 192, 240
BseBI CCWGG 2 cut(s) 105, 447
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 8 cut(s) 103, 122, 161, 206, 358, 390, 402, 446
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 162
BseRI GAGGAG 3 cut(s) 87, 273, 276
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
BsgI GTGCAG 2 cut(s) 401, 444
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 4 cut(s) 116, 240, 429, 535
BshTI ACCGGT 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 5 cut(s) 193, 206, 241, 360, 390
BslFI GGGAC 3 cut(s) 328, 456, 511
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 162
BsmAI GTCTC 2 cut(s) 34, 640
BsmBI CGTCTC 1 cut(s) 640
BsmFI GGGAC 3 cut(s) 328, 456, 511
BsnI GGCC 4 cut(s) 116, 240, 429, 535
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 5 cut(s) 45, 174, 367, 487, 655
Bsp19I CCATGG 3 cut(s) 122, 161, 402
BspACI CCGC 2 cut(s) 42, 574
BspANI GGCC 4 cut(s) 116, 240, 429, 535
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 5 cut(s) 176, 343, 344, 444, 667
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 169, 182
BsrFI RCCGGY 2 cut(s) 192, 240
BssAI RCCGGY 2 cut(s) 192, 240
BssECI CCNNGG 8 cut(s) 103, 122, 161, 206, 358, 390, 402, 446
BssMI GATC 5 cut(s) 45, 174, 367, 487, 655
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 3 cut(s) 122, 161, 402
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 2 cut(s) 105, 447
Bst4CI ACNGT 1 cut(s) 562
BstAPI GCANNNNNTGC 1 cut(s) 458
BstDSI CCRYGG 3 cut(s) 122, 161, 402
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 3 cut(s) 110, 188, 375
BstKTI GATC 5 cut(s) 48, 177, 370, 490, 658
BstMAI GTCTC 2 cut(s) 34, 640
BstMBI GATC 5 cut(s) 45, 174, 367, 487, 655
BstMWI GCNNNNNNNGC 4 cut(s) 332, 372, 379, 458
BstNI CCWGG 2 cut(s) 105, 447
BstNSI RCATGY 2 cut(s) 97, 186
BstSCI CCNGG 5 cut(s) 103, 205, 358, 389, 445
BstSFI CTRYAG 2 cut(s) 336, 519
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 228
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 4 cut(s) 116, 240, 429, 535
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 3 cut(s) 122, 161, 402
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 3 cut(s) 110, 188, 375
Cfr10I RCCGGY 2 cut(s) 192, 240
Cfr13I GGNCC 2 cut(s) 342, 443
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 2 cut(s) 276, 601
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 7 cut(s) 94, 123, 162, 183, 377, 403, 643
CviQI GTAC 2 cut(s) 276, 601
DpnI GATC 5 cut(s) 47, 176, 369, 489, 657
DpnII GATC 5 cut(s) 45, 174, 367, 487, 655
EaeI YGGCCR 2 cut(s) 238, 427
Eco130I CCWWGG 3 cut(s) 122, 161, 402
Eco47I GGWCC 2 cut(s) 342, 443
EcoO109I RGGNCCY 2 cut(s) 342, 443
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 103, 445
EcoT14I CCWWGG 3 cut(s) 122, 161, 402
EcoT22I ATGCAT 1 cut(s) 328
ErhI CCWWGG 3 cut(s) 122, 161, 402
Esp3I CGTCTC 1 cut(s) 640
FaeI CATG 7 cut(s) 97, 126, 165, 186, 380, 406, 646
FaqI GGGAC 3 cut(s) 328, 456, 511
FatI CATG 7 cut(s) 93, 122, 161, 182, 376, 402, 642
Fnu4HI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
FokI GGATG 1 cut(s) 581
Fsp4HI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
FspBI CTAG 2 cut(s) 24, 639
GlaI GCGC 3 cut(s) 109, 187, 374
GluI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 4 cut(s) 116, 240, 429, 535
HapII CCGG 5 cut(s) 193, 206, 241, 360, 390
HhaI GCGC 3 cut(s) 110, 188, 375
Hin1II CATG 7 cut(s) 97, 126, 165, 186, 380, 406, 646
Hin6I GCGC 3 cut(s) 108, 186, 373
HinP1I GCGC 3 cut(s) 108, 186, 373
HinfI GANTC 2 cut(s) 27, 75
HpaII CCGG 5 cut(s) 193, 206, 241, 360, 390
HphI GGTGA 2 cut(s) 46, 596
Hpy166II GTNNAC 1 cut(s) 308
Hpy188III TCNNGA 2 cut(s) 172, 178
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 7 cut(s) 60, 308, 326, 338, 382, 461, 615
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 372, 379, 458
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 7 cut(s) 97, 126, 165, 186, 380, 406, 646
HspAI GCGC 3 cut(s) 108, 186, 373
KflI GGGWCCC 1 cut(s) 342
Kzo9I GATC 5 cut(s) 45, 174, 367, 487, 655
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
LweI GCATC 2 cut(s) 10, 335
MaeI CTAG 2 cut(s) 24, 639
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 1 cut(s) 556
MalI GATC 5 cut(s) 47, 176, 369, 489, 657
MboI GATC 5 cut(s) 45, 174, 367, 487, 655
MboII GAAGA 2 cut(s) 40, 43
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 4 cut(s) 315, 352, 478, 610
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 2 cut(s) 36, 84
MnlI CCTC 4 cut(s) 65, 251, 254, 257
Mox20I TGGCCA 1 cut(s) 429
Mph1103I ATGCAT 1 cut(s) 328
MscI TGGCCA 1 cut(s) 429
MseI TTAA 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 335, 455
MspI CCGG 5 cut(s) 193, 206, 241, 360, 390
MspR9I CCNGG 5 cut(s) 105, 207, 360, 391, 447
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 2 cut(s) 105, 447
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 332, 372, 379, 458
NciI CCSGG 3 cut(s) 207, 360, 391
NcoI CCATGG 3 cut(s) 122, 161, 402
NdeII GATC 5 cut(s) 45, 174, 367, 487, 655
NlaIII CATG 7 cut(s) 97, 126, 165, 186, 380, 406, 646
NlaIV GGNNCC 5 cut(s) 176, 343, 344, 444, 667
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 97, 186
PaqCI CACCTGC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 655
PflMI CCANNNNNTGG 1 cut(s) 123
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 7 cut(s) 218, 269, 272, 337, 454, 457, 460
PleI GAGTC 2 cut(s) 35, 83
PpsI GAGTC 2 cut(s) 35, 83
PpuMI RGGWCCY 2 cut(s) 342, 443
Psp5II RGGWCCY 2 cut(s) 342, 443
Psp6I CCWGG 2 cut(s) 103, 445
PspGI CCWGG 2 cut(s) 103, 445
PspN4I GGNNCC 5 cut(s) 176, 343, 344, 444, 667
PspPI GGNCC 2 cut(s) 342, 443
PspPPI RGGWCCY 2 cut(s) 342, 443
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 174
PvuII CAGCTG 2 cut(s) 335, 455
RsaI GTAC 2 cut(s) 277, 602
RsaNI GTAC 2 cut(s) 276, 601
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
Sau3AI GATC 5 cut(s) 45, 174, 367, 487, 655
Sau96I GGNCC 2 cut(s) 342, 443
SchI GAGTC 2 cut(s) 36, 84
ScrFI CCNGG 5 cut(s) 105, 207, 360, 391, 447
SduI GDGCHC 1 cut(s) 310
SetI ASST 8 cut(s) 59, 142, 337, 448, 457, 551, 586, 609
SfaNI GCATC 2 cut(s) 10, 335
SfcI CTRYAG 2 cut(s) 336, 519
SinI GGWCC 2 cut(s) 342, 443
Sse9I AATT 4 cut(s) 315, 352, 478, 610
SsiI CCGC 2 cut(s) 42, 574
SspMI CTAG 2 cut(s) 24, 639
StyD4I CCNGG 5 cut(s) 103, 205, 358, 389, 445
StyI CCWWGG 3 cut(s) 122, 161, 402
TaaI ACNGT 1 cut(s) 562
TaiI ACGT 1 cut(s) 551
TaqI TCGA 2 cut(s) 228, 658
TasI AATT 4 cut(s) 315, 352, 478, 610
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 7 cut(s) 216, 267, 270, 335, 452, 455, 458
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 429, 608
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 123
VneI GTGCAC 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 342, 443
XapI RAATTY 2 cut(s) 352, 478
XceI RCATGY 2 cut(s) 97, 186
XcmI CCANNNNNNNNNTGG 2 cut(s) 168, 443
XspI CTAG 2 cut(s) 24, 639
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.