Rh1DG158700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015249
Physical Location & Seq
Reverse (-)
32823846 .. 32824400
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG158700.1

Sequence Viewer

Length: 555 bp
ATGGAGCAAAGAAAAAGAGATGCTAGAGTCTCTATCATTTCCGCTCTCTTCTTCACCTGCATTGTGGCTGGAGGAGTCTTTCTTTTCCTTTACATGCTTCTCCCTGGTGCACAAGCCAAGCCATGGTATCCCATTGTAGGTTTGATACTTGTAGCCGTTCCATGGCTTTTCTGGATCCTGACATGCGCCTACCGGTGCTTCAAACCGGGAGATAGCAGCACACAAATCGATGGCAGTGGCCGGTATGTCAAGGCAGGAGGAGGAGGCAGCAGCCGTACAGCCACCACGCCCCCAACCACGAGTGGTGCACCAACAATTGCCAATGCATCATCAGCTGCAGGGTCCCCTGTAAATTCCCCAGGCGGGGATCAGCGCCACGTGCAGTTTGCCGGGGTTGTTGCCATGGGAAGTGATGAAGGAAATGGAGGCCAGACCCAAAAGGGACCTGGGGCAGCTGCTGCACAATATCATACCATAGATTTGGACGATCATAGTGGGACAAATGGTTCAGTTGGTTCTACAGAAAGTGAAAGGCCATTGAGATTAACGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.08

Weight (kDa)

8.51

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17590
fragaria_vesca FvH4_7g07110
malus_domestica MD02G1239600.v1.1 MD07G1077000.v1.1
prunus_persica Prupe.2G098000_v2.0.a1
pyrus_communis pycom02g20520 pycom07g06050
rosa_chinensis RchiOBHm_Chr1g0337051
rosa_laevigata RLG00000029308
rosa_multiflora Rmu_sc0040337.1_g000001
rosa_roxburghii Rroxscaffold_4G00314990
rosa_rugosa Rorug01G0130800
rosa_samantha Rh1AG151500 Rh1BG120300 Rh1CG142700 Rh1DG158700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 2 cut(s) 42, 363
AclWI GGATC 3 cut(s) 169, 182, 375
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 352
AcvI CACGTG 1 cut(s) 379
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 5 cut(s) 123, 137, 162, 363, 364
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 3 cut(s) 103, 358, 445
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 2 cut(s) 335, 455
AluI AGCT 2 cut(s) 335, 455
Alw21I GWGCWC 2 cut(s) 112, 310
Alw26I GTCTC 1 cut(s) 34
Alw44I GTGCAC 2 cut(s) 108, 306
AlwI GGATC 3 cut(s) 169, 182, 375
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 3 cut(s) 238, 427, 533
ApaLI GTGCAC 2 cut(s) 108, 306
ApeKI GCWGC 7 cut(s) 216, 267, 270, 335, 452, 455, 458
ApoI RAATTY 1 cut(s) 352
AsiGI ACCGGT 1 cut(s) 192
AspLEI GCGC 2 cut(s) 188, 375
AspS9I GGNCC 2 cut(s) 342, 443
AsuC2I CCSGG 2 cut(s) 207, 391
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 2 cut(s) 342, 443
BaeGI GKGCMC 2 cut(s) 112, 310
BamHI GGATCC 1 cut(s) 174
BauI CACGAG 1 cut(s) 298
BbrPI CACGTG 1 cut(s) 379
Bbv12I GWGCWC 2 cut(s) 112, 310
BbvI GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
BccI CCATC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 140, 258
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 3 cut(s) 105, 360, 447
BciVI GTATCC 1 cut(s) 138
BcnI CCSGG 2 cut(s) 207, 391
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 336, 519
BfoI RGCGCY 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 65
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
BlsI GCNGC 7 cut(s) 218, 269, 272, 337, 454, 457, 460
Bme1390I CCNGG 5 cut(s) 105, 207, 360, 391, 447
Bme18I GGWCC 2 cut(s) 342, 443
BmgT120I GGNCC 2 cut(s) 342, 443
BmiI GGNNCC 4 cut(s) 176, 343, 344, 444
BmrFI CCNGG 5 cut(s) 105, 207, 360, 391, 447
BmsI GCATC 2 cut(s) 10, 335
BpmI CTGGAG 1 cut(s) 90
BpuMI CCSGG 2 cut(s) 207, 391
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 379
BsaJI CCNNGG 7 cut(s) 103, 122, 161, 358, 390, 402, 446
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 137, 162, 363, 364
Bse118I RCCGGY 2 cut(s) 192, 240
BseBI CCWGG 3 cut(s) 105, 360, 447
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 7 cut(s) 103, 122, 161, 358, 390, 402, 446
BseLI CCNNNNNNNGG 5 cut(s) 123, 137, 162, 363, 364
BseRI GAGGAG 3 cut(s) 87, 273, 276
BseSI GKGCMC 2 cut(s) 112, 310
BseXI GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
BsgI GTGCAG 2 cut(s) 401, 444
BshFI GGCC 3 cut(s) 240, 429, 535
BshTI ACCGGT 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 112, 310
BsiSI CCGG 4 cut(s) 193, 206, 241, 390
BslFI GGGAC 3 cut(s) 328, 456, 511
BslI CCNNNNNNNGG 5 cut(s) 123, 137, 162, 363, 364
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 3 cut(s) 328, 456, 511
BsnI GGCC 3 cut(s) 240, 429, 535
Bsp1286I GDGCHC 2 cut(s) 112, 310
Bsp143I GATC 3 cut(s) 174, 367, 487
Bsp19I CCATGG 3 cut(s) 122, 161, 402
BspACI CCGC 2 cut(s) 42, 363
BspANI GGCC 3 cut(s) 240, 429, 535
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 176, 343, 344, 444
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 169, 182, 375
BsrBI CCGCTC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 192, 240
BssAI RCCGGY 2 cut(s) 192, 240
BssECI CCNNGG 7 cut(s) 103, 122, 161, 358, 390, 402, 446
BssMI GATC 3 cut(s) 174, 367, 487
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 3 cut(s) 122, 161, 402
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 105, 360, 447
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 379
BstDSI CCRYGG 3 cut(s) 122, 161, 402
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 2 cut(s) 188, 375
BstKTI GATC 3 cut(s) 177, 370, 490
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 174, 367, 487
BstMWI GCNNNNNNNGC 3 cut(s) 332, 379, 458
BstNI CCWGG 3 cut(s) 105, 360, 447
BstNSI RCATGY 2 cut(s) 97, 186
BstSCI CCNGG 5 cut(s) 103, 205, 358, 389, 445
BstSFI CTRYAG 2 cut(s) 336, 519
BstSLI GKGCMC 2 cut(s) 112, 310
BstV1I GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 228
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 3 cut(s) 240, 429, 535
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 3 cut(s) 122, 161, 402
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 2 cut(s) 188, 375
Cfr10I RCCGGY 2 cut(s) 192, 240
Cfr13I GGNCC 2 cut(s) 342, 443
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 276
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 5 cut(s) 94, 123, 162, 183, 403
CviQI GTAC 1 cut(s) 276
DpnI GATC 3 cut(s) 176, 369, 489
DpnII GATC 3 cut(s) 174, 367, 487
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 122, 161, 402
Eco47I GGWCC 2 cut(s) 342, 443
Eco72I CACGTG 1 cut(s) 379
EcoO109I RGGNCCY 2 cut(s) 342, 443
EcoRII CCWGG 3 cut(s) 103, 358, 445
EcoT14I CCWWGG 3 cut(s) 122, 161, 402
EcoT22I ATGCAT 1 cut(s) 328
ErhI CCWWGG 3 cut(s) 122, 161, 402
FaeI CATG 5 cut(s) 97, 126, 165, 186, 406
FaiI YATR 9 cut(s) 95, 124, 163, 184, 246, 404, 471, 476, 492
FaqI GGGAC 3 cut(s) 328, 456, 511
FatI CATG 5 cut(s) 93, 122, 161, 182, 402
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
Fsp4HI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
FspBI CTAG 1 cut(s) 24
GlaI GCGC 2 cut(s) 187, 374
GluI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 3 cut(s) 240, 429, 535
HapII CCGG 4 cut(s) 193, 206, 241, 390
HhaI GCGC 2 cut(s) 188, 375
Hin1II CATG 5 cut(s) 97, 126, 165, 186, 406
Hin6I GCGC 2 cut(s) 186, 373
HinP1I GCGC 2 cut(s) 186, 373
HinfI GANTC 2 cut(s) 27, 75
HpaII CCGG 4 cut(s) 193, 206, 241, 390
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 110, 308
Hpy188III TCNNGA 2 cut(s) 172, 178
Hpy8I GTNNAC 2 cut(s) 110, 308
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 7 cut(s) 60, 110, 308, 326, 338, 382, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 379, 458
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 5 cut(s) 97, 126, 165, 186, 406
HspAI GCGC 2 cut(s) 186, 373
KflI GGGWCCC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 174, 367, 487
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 7 cut(s) 228, 279, 282, 322, 442, 445, 464
LweI GCATC 2 cut(s) 10, 335
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 378
MalI GATC 3 cut(s) 176, 369, 489
MbiI CCGCTC 1 cut(s) 44
MboI GATC 3 cut(s) 174, 367, 487
MboII GAAGA 2 cut(s) 40, 43
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 112, 310
MluCI AATT 2 cut(s) 315, 352
MlyI GAGTC 2 cut(s) 36, 84
MnlI CCTC 5 cut(s) 65, 251, 254, 257, 419
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 545, 553
MspA1I CMGCKG 2 cut(s) 335, 455
MspI CCGG 4 cut(s) 193, 206, 241, 390
MspR9I CCNGG 5 cut(s) 105, 207, 360, 391, 447
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 3 cut(s) 105, 360, 447
MwoI GCNNNNNNNGC 3 cut(s) 332, 379, 458
NciI CCSGG 2 cut(s) 207, 391
NcoI CCATGG 3 cut(s) 122, 161, 402
NdeII GATC 3 cut(s) 174, 367, 487
NlaIII CATG 5 cut(s) 97, 126, 165, 186, 406
NlaIV GGNNCC 4 cut(s) 176, 343, 344, 444
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 97, 186
PaqCI CACCTGC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 123
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 7 cut(s) 218, 269, 272, 337, 454, 457, 460
PleI GAGTC 2 cut(s) 35, 83
PmaCI CACGTG 1 cut(s) 379
PmlI CACGTG 1 cut(s) 379
PpsI GAGTC 2 cut(s) 35, 83
Ppu21I YACGTR 1 cut(s) 379
PpuMI RGGWCCY 2 cut(s) 342, 443
Psp5II RGGWCCY 2 cut(s) 342, 443
Psp6I CCWGG 3 cut(s) 103, 358, 445
PspCI CACGTG 1 cut(s) 379
PspGI CCWGG 3 cut(s) 103, 358, 445
PspN4I GGNNCC 4 cut(s) 176, 343, 344, 444
PspPI GGNCC 2 cut(s) 342, 443
PspPPI RGGWCCY 2 cut(s) 342, 443
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 174
PvuII CAGCTG 2 cut(s) 335, 455
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 545, 553
SatI GCNGC 7 cut(s) 217, 268, 271, 336, 453, 456, 459
Sau3AI GATC 3 cut(s) 174, 367, 487
Sau96I GGNCC 2 cut(s) 342, 443
SchI GAGTC 2 cut(s) 36, 84
ScrFI CCNGG 5 cut(s) 105, 207, 360, 391, 447
SduI GDGCHC 2 cut(s) 112, 310
SetI ASST 6 cut(s) 59, 142, 337, 381, 448, 457
SfaNI GCATC 2 cut(s) 10, 335
SfcI CTRYAG 2 cut(s) 336, 519
SinI GGWCC 2 cut(s) 342, 443
Sse9I AATT 2 cut(s) 315, 352
SsiI CCGC 2 cut(s) 42, 363
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 5 cut(s) 103, 205, 358, 389, 445
StyI CCWWGG 3 cut(s) 122, 161, 402
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 315, 352
Tru1I TTAA 2 cut(s) 545, 553
Tru9I TTAA 2 cut(s) 545, 553
TscAI CASTG 1 cut(s) 241
TseI GCWGC 7 cut(s) 216, 267, 270, 335, 452, 455, 458
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 123
VneI GTGCAC 2 cut(s) 108, 306
VpaK11BI GGWCC 2 cut(s) 342, 443
XapI RAATTY 1 cut(s) 352
XceI RCATGY 2 cut(s) 97, 186
XcmI CCANNNNNNNNNTGG 2 cut(s) 168, 443
XspI CTAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.