MD02G1239600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015249
Physical Location & Seq
Forward (+)
28805197 .. 28805724
528 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1239600.v1.1.491

Sequence Viewer

Length: 528 bp
ATGGAGGAAAGGAAAGGAGATGCTAGAGTCTCTGTCATCTCCACCCTTTTCTTCGTCTGCATTATTGCCGGCGGAGTACTTCTTTTCCTTTACATGCTTCTACCTGAAGAAAAATCCCAACCATGGTTCCCCTTTGCAGGAATGGTGCTTGTGGCTATTCCATGGGCGTTTTGGATCACGACGTGTATCTACAGATGCTTTAGGCCCGCCGCTGCCACGCATACTGGGGACAGCGGTCACTATGCCAAGGCAGGCAGCAGCCGGGCTGCCACCATCCCCAGCACGAGCAGCGCATTGACAGCTGGCATTGCATCATCAGCTACAGACTCCCCTGTTCATTCACCTAATGGTGACCGAAGGGTGCAGTTTGCCGGGGTGGTTGTAATGGGGAACGAAGATCAGGGTGGACACGGAGGCCAGAATGGAAAAGACAACCATCATCAAGCCATAGACATGGAACATGATACTGCGATCAATGATTCAGTTGGTTCTAAAGATAGTGAAATGCCGTTGAGATTAATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.74

Weight (kDa)

5.93

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17590
fragaria_vesca FvH4_7g07110
malus_domestica MD02G1239600.v1.1 MD07G1077000.v1.1
prunus_persica Prupe.2G098000_v2.0.a1
pyrus_communis pycom02g20520 pycom07g06050
rosa_chinensis RchiOBHm_Chr1g0337051
rosa_laevigata RLG00000029308
rosa_multiflora Rmu_sc0040337.1_g000001
rosa_roxburghii Rroxscaffold_4G00314990
rosa_rugosa Rorug01G0130800
rosa_samantha Rh1AG151500 Rh1BG120300 Rh1CG142700 Rh1DG158700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 72, 207, 210, 234
AclWI GGATC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 123, 137
AflIII ACRYGT 1 cut(s) 182
AjiI CACGTC 1 cut(s) 183
AluBI AGCT 2 cut(s) 302, 320
AluI AGCT 2 cut(s) 302, 320
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 182
AoxI GGCC 2 cut(s) 203, 415
ApeKI GCWGC 5 cut(s) 212, 255, 258, 266, 288
AseI ATTAAT 1 cut(s) 518
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 2 cut(s) 263, 373
AsuHPI GGTGA 2 cut(s) 333, 362
BauI CACGAG 1 cut(s) 283
BbvI GCAGC 5 cut(s) 199, 253, 267, 270, 300
BccI CCATC 2 cut(s) 281, 444
BceAI ACGGC 1 cut(s) 493
BcnI CCSGG 2 cut(s) 263, 373
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 190, 321
BisI GCNGC 6 cut(s) 210, 213, 256, 259, 267, 289
BlsI GCNGC 6 cut(s) 211, 214, 257, 260, 268, 290
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 263, 373
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 263, 373
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 10, 185, 320
BmuI ACTGGG 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 263, 373
BsaJI CCNNGG 4 cut(s) 122, 161, 246, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 137
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 122, 161, 246, 372
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 123, 137
BseMI GCAATG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 5 cut(s) 199, 253, 267, 270, 300
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 2 cut(s) 205, 417
BsiSI CCGG 3 cut(s) 69, 262, 372
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 123, 137
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 2 cut(s) 205, 417
Bsp143I GATC 3 cut(s) 174, 397, 471
Bsp19I CCATGG 2 cut(s) 122, 161
BspACI CCGC 4 cut(s) 72, 207, 210, 234
BspANI GGCC 2 cut(s) 205, 417
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 122, 161, 246, 372
BssMI GATC 3 cut(s) 174, 397, 471
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 3 cut(s) 122, 161, 246
Bst2BI CACGAG 1 cut(s) 283
BstC8I GCNNGC 4 cut(s) 70, 207, 253, 304
BstDSI CCRYGG 2 cut(s) 122, 161
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 177, 400, 474
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 174, 397, 471
BstMWI GCNNNNNNNGC 4 cut(s) 288, 299, 308, 317
BstNSI RCATGY 1 cut(s) 97
BstPAI GACNNNNGTC 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 261, 371
BstSFI CTRYAG 2 cut(s) 190, 321
BstV1I GCAGC 5 cut(s) 199, 253, 267, 270, 300
BstXI CCANNNNNNTGG 1 cut(s) 454
BsuRI GGCC 2 cut(s) 205, 417
BtgI CCRYGG 2 cut(s) 122, 161
BtrI CACGTC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 273
Cac8I GCNNGC 4 cut(s) 70, 207, 253, 304
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 77
CviAII CATG 5 cut(s) 94, 123, 162, 454, 461
CviJI RGCY 8 cut(s) 155, 205, 261, 266, 302, 320, 417, 446
CviKI_1 RGCY 8 cut(s) 155, 205, 261, 266, 302, 320, 417, 446
CviQI GTAC 1 cut(s) 77
DpnI GATC 3 cut(s) 176, 399, 473
DpnII GATC 3 cut(s) 174, 397, 471
DraIII CACNNNGTG 1 cut(s) 183
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 3 cut(s) 122, 161, 246
Eco57I CTGAAG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 350
EcoT14I CCWWGG 3 cut(s) 122, 161, 246
ErhI CCWWGG 3 cut(s) 122, 161, 246
FaeI CATG 5 cut(s) 97, 126, 165, 457, 464
FaiI YATR 8 cut(s) 95, 124, 163, 222, 243, 449, 455, 462
FaqI GGGAC 1 cut(s) 242
FatI CATG 5 cut(s) 93, 122, 161, 453, 460
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 6 cut(s) 210, 213, 256, 259, 267, 289
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 6 cut(s) 210, 213, 256, 259, 267, 289
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 292
GluI GCNGC 6 cut(s) 210, 213, 256, 259, 267, 289
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 2 cut(s) 205, 417
HapII CCGG 3 cut(s) 69, 262, 372
HhaI GCGC 1 cut(s) 293
Hin1II CATG 5 cut(s) 97, 126, 165, 457, 464
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 3 cut(s) 27, 326, 479
HpaII CCGG 3 cut(s) 69, 262, 372
HphI GGTGA 2 cut(s) 333, 362
Hpy166II GTNNAC 1 cut(s) 407
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 351
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 60, 137, 311, 364
HpyF10VI GCNNNNNNNGC 4 cut(s) 288, 299, 308, 317
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 5 cut(s) 97, 126, 165, 457, 464
HspAI GCGC 1 cut(s) 291
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 174, 397, 471
Lsp1109I GCAGC 5 cut(s) 199, 253, 267, 270, 300
LweI GCATC 3 cut(s) 10, 185, 320
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 236, 350
MalI GATC 3 cut(s) 176, 399, 473
MboI GATC 3 cut(s) 174, 397, 471
MboII GAAGA 3 cut(s) 43, 119, 407
MlyI GAGTC 2 cut(s) 36, 320
MnlI CCTC 1 cut(s) 407
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 3 cut(s) 212, 234, 302
MspI CCGG 3 cut(s) 69, 262, 372
MspR9I CCNGG 2 cut(s) 263, 373
MwoI GCNNNNNNNGC 4 cut(s) 288, 299, 308, 317
NaeI GCCGGC 1 cut(s) 70
NciI CCSGG 2 cut(s) 263, 373
NcoI CCATGG 2 cut(s) 122, 161
NdeII GATC 3 cut(s) 174, 397, 471
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 5 cut(s) 97, 126, 165, 457, 464
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 2 cut(s) 236, 350
NspI RCATGY 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 6 cut(s) 211, 214, 257, 260, 268, 290
PleI GAGTC 2 cut(s) 35, 320
PpsI GAGTC 2 cut(s) 35, 320
PshAI GACNNNNGTC 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 518
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 6 cut(s) 210, 213, 256, 259, 267, 289
Sau3AI GATC 3 cut(s) 174, 397, 471
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 78
SchI GAGTC 2 cut(s) 36, 320
ScrFI CCNGG 2 cut(s) 263, 373
SetI ASST 5 cut(s) 106, 185, 304, 322, 346
SfaNI GCATC 3 cut(s) 10, 185, 320
SfcI CTRYAG 2 cut(s) 190, 321
SmiMI CAYNNNNRTG 1 cut(s) 452
SsiI CCGC 4 cut(s) 72, 207, 210, 234
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 261, 371
StyI CCWWGG 3 cut(s) 122, 161, 246
TaiI ACGT 1 cut(s) 185
TaqII GACCGA 1 cut(s) 369
TatI WGTACW 1 cut(s) 76
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TseFI GTSAC 2 cut(s) 236, 350
TseI GCWGC 5 cut(s) 212, 255, 258, 266, 288
Tsp45I GTSAC 2 cut(s) 236, 350
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 426
VspI ATTAAT 1 cut(s) 518
XceI RCATGY 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.