Rorug01G0130800

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
22204967 .. 22207605
2639 bp
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UTR
Exon/CDS
Intron
Rorug01G0130800.1

Sequence Viewer

Length: 789 bp
ATGCAGTATCATAGCCCAGAAGAAATGGAAACTGGAAATTTAACACAAAGTGTGCCAAGAAGTCTAGGCTTGTTAAAATATGTAGCTCAAAGGAAAGAGCTTGAGAGGATAGAAGCCAAGAGGAATGAACTTACGAAATTGTATCATCACACTGAAGCAAAGCTTTTGGCTAAAAGCTTAGACCTCAAGATCAGTGAAGGAAAGCTCTTGGCTAAAACTGAAGACCTCAAGAAGAGTGAAGCAAATCTCTTGGCTAAAACCGAAGAGCTCAAGAAGAGTGTAGCAGAGAACTTGGCTAAAAACGAAGAGCTCATGATCAGTGAAGCTCAGAAGGAGGAGCTTTCAAATTTTCTTCGGCAAAGTGAAAGTCAAAACAAACAACTTGAGAAAGTTCTTGAGCAGATTGGGGATGAAGTGGAAAATCTGAAGAGAGCACATGCACACTGTGAACAAGTCAAAAAGTTTGAGCTTGAGCAGACTAGAGCTGTAAGGAAAGATCTTGAGGAAAAGCTTACACAAAGTGAAGCTCAAGTGGAAGATCTTAAGGAGGCACTTGGCAAGAGTGAAGCCGAGAAAATAGAGATGAAGGAGAGGGTTATTTTAGAGCAAAAGAAAGCTGATGAATTAGTGGCATGGTTAGCAGAAGCGCGCAAGAAATGGGAGAGTGAAAAAGAAAGACTTCGCTGTATAAACACCGAACTAGCGAAGCAGCTTGAAGATGCCAAGATGAAAAGCATTGATGATGAGTTCGAAGTTGTTGATGATGAGTTTGATGTTAAGGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

262

Amino Acids

30.4

Weight (kDa)

5.27

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 649
AcsI RAATTY 2 cut(s) 37, 346
AcuI CTGAAG 3 cut(s) 174, 240, 446
AdeI CACNNNGTG 3 cut(s) 50, 446, 521
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 2 cut(s) 345, 716
Alw21I GWGCWC 3 cut(s) 270, 312, 436
ApeKI GCWGC 1 cut(s) 709
ApoI RAATTY 2 cut(s) 37, 346
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 649, 651
AsuII TTCGAA 1 cut(s) 750
BanII GRGCYC 2 cut(s) 270, 312
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 3 cut(s) 270, 312, 436
BbvI GCAGC 1 cut(s) 721
BclI TGATCA 1 cut(s) 315
BfaI CTAG 3 cut(s) 65, 480, 701
BfrI CTTAAG 1 cut(s) 542
BglII AGATCT 2 cut(s) 496, 538
BisI GCNGC 1 cut(s) 710
BlsI GCNGC 1 cut(s) 711
BmsI GCATC 1 cut(s) 709
BpiI GAAGAC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 750
BpuEI CTTGAG 9 cut(s) 122, 170, 212, 254, 404, 416, 491, 513, 521
Bse1I ACTGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 37
BsePI GCGCGC 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 721
Bsh1236I CGCG 1 cut(s) 649
BsiHKAI GWGCWC 3 cut(s) 270, 312, 436
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 3 cut(s) 270, 312, 436
Bsp143I GATC 4 cut(s) 189, 315, 496, 538
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 1 cut(s) 649
BspHI TCATGA 1 cut(s) 312
BspQI GCTCTTC 2 cut(s) 258, 300
BspT104I TTCGAA 1 cut(s) 750
BspTI CTTAAG 1 cut(s) 542
BsrI ACTGG 1 cut(s) 37
BssHII GCGCGC 1 cut(s) 647
BssMI GATC 4 cut(s) 189, 315, 496, 538
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 5 cut(s) 227, 258, 269, 300, 422
BstAFI CTTAAG 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 2 cut(s) 178, 327
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 649
BstHHI GCGC 2 cut(s) 649, 651
BstKTI GATC 4 cut(s) 192, 318, 499, 541
BstMBI GATC 4 cut(s) 189, 315, 496, 538
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNSI RCATGY 1 cut(s) 440
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 721
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 496, 538
BstYI RGATCY 2 cut(s) 496, 538
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 4 cut(s) 150, 199, 325, 442
Cac8I GCNNGC 1 cut(s) 649
CciI TCATGA 1 cut(s) 312
CfoI GCGC 2 cut(s) 649, 651
CviAII CATG 3 cut(s) 313, 437, 633
DdeI CTNAG 2 cut(s) 178, 327
DpnI GATC 4 cut(s) 191, 317, 498, 540
DpnII GATC 4 cut(s) 189, 315, 496, 538
DraIII CACNNNGTG 3 cut(s) 50, 446, 521
Eam1104I CTCTTC 5 cut(s) 227, 258, 269, 300, 422
EarI CTCTTC 5 cut(s) 227, 258, 269, 300, 422
Ecl136II GAGCTC 2 cut(s) 268, 310
Eco24I GRGCYC 2 cut(s) 270, 312
Eco53kI GAGCTC 2 cut(s) 268, 310
Eco57I CTGAAG 3 cut(s) 174, 240, 446
EcoICRI GAGCTC 2 cut(s) 268, 310
EcoT38I GRGCYC 2 cut(s) 270, 312
FaeI CATG 3 cut(s) 316, 440, 636
FaiI YATR 6 cut(s) 12, 81, 314, 438, 634, 689
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 663, 695
FatI CATG 3 cut(s) 312, 436, 632
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 710
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 270, 312
Fsp4HI GCNGC 1 cut(s) 710
FspBI CTAG 3 cut(s) 65, 480, 701
GlaI GCGC 2 cut(s) 648, 650
GluI GCNGC 1 cut(s) 710
HhaI GCGC 2 cut(s) 649, 651
Hin1II CATG 3 cut(s) 316, 440, 636
Hin6I GCGC 2 cut(s) 647, 649
HinP1I GCGC 2 cut(s) 647, 649
HindIII AAGCTT 3 cut(s) 161, 175, 509
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 330, 426
Hpy188III TCNNGA 6 cut(s) 187, 229, 271, 313, 395, 500
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 3 cut(s) 191, 325, 580
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 2 cut(s) 4, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 2 cut(s) 178, 327
Hsp92II CATG 3 cut(s) 316, 440, 636
HspAI GCGC 2 cut(s) 647, 649
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 4 cut(s) 189, 315, 496, 538
LguI GCTCTTC 2 cut(s) 258, 300
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 2 cut(s) 18, 30
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 1 cut(s) 709
MaeI CTAG 3 cut(s) 65, 480, 701
MalI GATC 4 cut(s) 191, 317, 498, 540
MboI GATC 4 cut(s) 189, 315, 496, 538
MflI RGATCY 2 cut(s) 496, 538
MhlI GDGCHC 3 cut(s) 270, 312, 436
MluCI AATT 4 cut(s) 37, 137, 346, 623
MnlI CCTC 8 cut(s) 99, 114, 194, 236, 328, 496, 541, 585
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 5 cut(s) 41, 74, 543, 777, 787
MspCI CTTAAG 1 cut(s) 542
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 1 cut(s) 638
NdeII GATC 4 cut(s) 189, 315, 496, 538
NlaIII CATG 3 cut(s) 316, 440, 636
NmeAIII GCCGAG 1 cut(s) 595
NspI RCATGY 1 cut(s) 440
NspV TTCGAA 1 cut(s) 750
PagI TCATGA 1 cut(s) 312
PauI GCGCGC 1 cut(s) 647
PciSI GCTCTTC 2 cut(s) 258, 300
PdmI GAANNNNTTC 1 cut(s) 678
PkrI GCNGC 1 cut(s) 711
Psp124BI GAGCTC 2 cut(s) 270, 312
PsuI RGATCY 2 cut(s) 496, 538
PteI GCGCGC 1 cut(s) 647
SacI GAGCTC 2 cut(s) 270, 312
SapI GCTCTTC 2 cut(s) 258, 300
SaqAI TTAA 5 cut(s) 41, 74, 543, 777, 787
SatI GCNGC 1 cut(s) 710
Sau3AI GATC 4 cut(s) 189, 315, 496, 538
SduI GDGCHC 3 cut(s) 270, 312, 436
SfaNI GCATC 1 cut(s) 709
SfuI TTCGAA 1 cut(s) 750
Sse9I AATT 4 cut(s) 37, 137, 346, 623
SspMI CTAG 3 cut(s) 65, 480, 701
SstI GAGCTC 2 cut(s) 270, 312
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 1 cut(s) 750
TasI AATT 4 cut(s) 37, 137, 346, 623
Tru1I TTAA 5 cut(s) 41, 74, 543, 777, 787
Tru9I TTAA 5 cut(s) 41, 74, 543, 777, 787
TscAI CASTG 4 cut(s) 157, 199, 325, 449
TseI GCWGC 1 cut(s) 709
TspDTI ATGAA 5 cut(s) 141, 426, 599, 636, 743
TspRI CASTG 4 cut(s) 157, 199, 325, 449
Vha464I CTTAAG 1 cut(s) 542
XapI RAATTY 2 cut(s) 37, 346
XceI RCATGY 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 3 cut(s) 65, 480, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.