Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009358

Physical Location & Seq

Genomic Coordinates Forward (+)

28377489 .. 28381112

Gene Structure 3624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG151400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGAGAAGAGACGAAGCAAAGATACATCATCATTATGGTTGCCCAAGTCTACATCGGATATGCAACTAAATGTACTTGGTGGTCAGCCATTCACTATGGACAAAGAGCTTCTGGCTGCAAAATCAGCCAAATTTGCTGCTACACTCAAAGAGAATCCGCAGGAAGATCTTGCCAACTTCCTCCAAAGTGTCCCTGCTACTGCAGACACTCTTGAGCTTGTTGCGAGATTCTATCATGGCTTTGAAATTCAAATTTGCAGTCAGAATGTTGTACAGCTCATTTGCGTTGCTGACTACTTGGACATGACTGAAAACCACAGCAAAGATAATTTATTACACAAAGCTATTTCATATTTTCAACAAAGAATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTCCGATCCACAGAAAAGGTATTTCAACAATCCTGGAAGCTTGGATTAGTACACGAATGTTTGGATTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGCGAACCAATCAAGAATTCTACTGCAAATGCTGATGATAGTGACGAGGATTATGAAGGTTATAAGCCGAATGCAAGGAGAAGGCTCTTCGATCTCAATTGGAAACCAGAGGATCTAACGACATTGTCCCTGCAGCTTTATGAGCTCCTCATGCATGCAATGAATAAGCATGGAGTTCCATCAGAATATGTGGCTGCGTCTCTTTGTAACTACACTAAGAAATGGGTTTTCTCTAGCAGTGGAGAGGAAGCACTCAAGAAAAAGTACCAAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCTGATGAAATAGGACTCCTTCCATGCACGTTGTTGTTTCAAATGCTTCGAGTTGCTATTTATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAATTGGAAAACAACTTGACCAGGCAACAGTCAAAGACCTCTTAATACCATCTCACGGCTATTCTAAAGTAGTGCAATATGATATTCAATGTGTGAGAAGGATTGTGAAGGTTTTCTATGCTAATTACTCTTCTTCAAATGTAACTGACATAACTGGTCTAATAGCAGTGGCAGATCTCATTGAAGAATTCTTAGCTGAAGTTGCTAGTGACATAGACTTGAAGATATCTACATTTGTTGGATTAGCAGAGATGTTGGTTTCAGCATCCATGGGAGTAAAAACAAACTCGGATGGAATATACAGGGCTGTTGCTATATACTTAGATAAGCACAGGCACTTGACAGAATCCGAGCGAGAAGAAGTGTGTCAGGTATTGGATTTCCAAAAGATGTCCCCCCAAGCTTGTGATCATGCAGCCAAAAACGAATGCATGCCATTAAGGATGGTGGTACAGGTGTTGTTTGCGGGGCAATTGCAGCTTAGAGACACGATCACGAAGGAGGTGCAGAGTTCGGATGAGAAATTAATAAAAGAAGAAGCAGACGAGGTGAATGCACCAAGGGTGGATTTGTGTGAGGGGAAAATGAGATCAGAGGTGGAGAAAATGAGCAAAAAGGTGATGCAGCTTGAGAGAGAGTGCAGTATGATGAGAAAAGAGATTGAGAATAGCTCTAGCCTTGTGGTGAGGAAGGAAAAACCTAGCTTGTGGAGAGAAATGAAGAGAAAGTTTGGTTGCATCAGCAGCGCTGACGATTCTAACTGCCAATTGAAGAGGAAAAAGTTGCCTCTGAAACCAAAACGTGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

573

Amino Acids

65.12

Weight (kDa)

6.6

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	14 - 104	7.7e-06	BTB/POZ domain
NPH3	PF03000	201 - 439	1.4e-70	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03510 AT5G17580 AT5G17580
fragaria_vesca	FvH4_7g07100
malus_domestica	MD02G1239800.v1.1 MD02G1239900.v1.1 MD07G1076800.v1.1
prunus_persica	Prupe.2G097900_v2.0.a1 Prupe.2G097900_v2.0.a1
pyrus_communis	pycom07g06040
rosa_chinensis	RchiOBHm_Chr1g0337041
rosa_laevigata	RLG00000029309
rosa_multiflora	Rmu_co8265129.1_g000001 Rmu_sc0009742.1_g000014
rosa_roxburghii	Rroxscaffold_4G00315000
rosa_rugosa	Rorug01G0130800
rosa_samantha	Rh1AG151400 Rh1BG120400 Rh1CG142600 Rh1CG250700 Rh1DG158600
rosa_wichuraiana	Rw1G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AccB7I	CCANNNNNTGG	2 cut(s)	502, 1712
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	158, 1376
AclWI	GGATC	2 cut(s)	399, 624
AcsI	RAATTY	5 cut(s)	131, 246, 252, 520, 1097
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	5 cut(s)	75, 273, 450, 770, 1362
AfeI	AGCGCT	1 cut(s)	1657
AfiI	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
AjnI	CCWGG	2 cut(s)	431, 930
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	3 cut(s)	4, 708, 1389
AlwI	GGATC	2 cut(s)	399, 624
Aor51HI	AGCGCT	1 cut(s)	1657
ApeKI	GCWGC	8 cut(s)	116, 137, 637, 698, 1325, 1387, 1534, 1653
ApoI	RAATTY	5 cut(s)	131, 246, 252, 520, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AseI	ATTAAT	1 cut(s)	1436
Asp700I	GAANNNNTTC	1 cut(s)	1022
AspLEI	GCGC	1 cut(s)	1658
AsuHPI	GGTGA	3 cut(s)	1471, 1540, 1606
BaeI	ACNNNNGTAYC	2 cut(s)	1352, 1385
BanII	GRGCYC	1 cut(s)	651
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	8 cut(s)	103, 124, 649, 685, 1337, 1399, 1546, 1665
BccI	CCATC	4 cut(s)	691, 967, 1196, 1348
BceAI	ACGGC	1 cut(s)	982
BcgI	CGANNNNNNTGC	4 cut(s)	1396, 1430, 1445, 1479
BciT130I	CCWGG	2 cut(s)	433, 932
BclI	TGATCA	1 cut(s)	1318
BcoDI	GTCTC	3 cut(s)	4, 708, 1389
BfaI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
BfmI	CTRYAG	3 cut(s)	201, 635, 889
BfoI	RGCGCY	1 cut(s)	1659
BglII	AGATCT	2 cut(s)	166, 1084
BisI	GCNGC	8 cut(s)	117, 138, 638, 699, 1326, 1388, 1535, 1654
BlsI	GCNGC	8 cut(s)	118, 139, 639, 700, 1327, 1389, 1536, 1655
Bme1390I	CCNGG	2 cut(s)	433, 932
BmrFI	CCNGG	2 cut(s)	433, 932
BmsI	GCATC	3 cut(s)	1184, 1521, 1656
BplI	GAGNNNNNCTC	2 cut(s)	1565, 1597
BpuEI	CTTGAG	3 cut(s)	233, 743, 1559
BsaBI	GATNNNNATC	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	1179, 1469
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
Bse1I	ACTGG	1 cut(s)	1069
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	905
BseBI	CCWGG	2 cut(s)	433, 932
BseDI	CCNNGG	2 cut(s)	1179, 1469
BseGI	GGATG	5 cut(s)	780, 1175, 1207, 1359, 1432
BseJI	GATNNNNATC	1 cut(s)	905
BseLI	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
BseMI	GCAATG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	1069
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	8 cut(s)	103, 124, 649, 685, 1337, 1399, 1546, 1665
BsgI	GTGCAG	2 cut(s)	1436, 1570
BsiHKAI	GWGCWC	1 cut(s)	651
BslFI	GGGAC	4 cut(s)	176, 477, 616, 1288
BslI	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
BsmAI	GTCTC	3 cut(s)	4, 708, 1389
BsmBI	CGTCTC	2 cut(s)	4, 708
BsmFI	GGGAC	4 cut(s)	176, 477, 616, 1288
BsmI	GAATGC	3 cut(s)	580, 1343, 1468
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
Bsp19I	CCATGG	1 cut(s)	1179
BspACI	CCGC	2 cut(s)	158, 1376
BspMAI	CTGCAG	3 cut(s)	205, 639, 893
BspPI	GGATC	2 cut(s)	399, 624
BspQI	GCTCTTC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	669
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	1069
BssECI	CCNNGG	2 cut(s)	1179, 1469
BssMI	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
BssT1I	CCWWGG	2 cut(s)	1179, 1469
Bst2UI	CCWGG	2 cut(s)	433, 932
Bst4CI	ACNGT	2 cut(s)	940, 1719
Bst6I	CTCTTC	5 cut(s)	2, 596, 1045, 1625, 1676
BstAUI	TGTACA	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	660, 1343
BstDEI	CTNAG	4 cut(s)	720, 1102, 1231, 1391
BstDSI	CCRYGG	1 cut(s)	1179
BstF5I	GGATG	5 cut(s)	780, 1175, 1207, 1359, 1432
BstH2I	RGCGCY	1 cut(s)	1659
BstHHI	GCGC	1 cut(s)	1658
BstKTI	GATC	9 cut(s)	169, 407, 598, 619, 909, 1087, 1321, 1404, 1502
BstMAI	GTCTC	3 cut(s)	4, 708, 1389
BstMBI	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 134, 646, 655, 1112, 1387, 1653
BstNI	CCWGG	2 cut(s)	433, 932
BstNSI	RCATGY	2 cut(s)	662, 1345
BstSCI	CCNGG	2 cut(s)	431, 930
BstSFI	CTRYAG	3 cut(s)	201, 635, 889
BstV1I	GCAGC	8 cut(s)	103, 124, 649, 685, 1337, 1399, 1546, 1665
BstX2I	RGATCY	3 cut(s)	166, 616, 1084
BstYI	RGATCY	3 cut(s)	166, 616, 1084
BtgI	CCRYGG	1 cut(s)	1179
BtsCI	GGATG	5 cut(s)	780, 1175, 1207, 1359, 1432
BtsI	GCAGTG	2 cut(s)	748, 1083
BtsIMutI	CAGTG	2 cut(s)	748, 1083
Cac8I	GCNNGC	2 cut(s)	660, 1343
CfoI	GCGC	1 cut(s)	1658
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	5 cut(s)	74, 272, 449, 769, 1361
CviAII	CATG	9 cut(s)	236, 304, 655, 659, 674, 831, 1180, 1322, 1342
CviQI	GTAC	5 cut(s)	74, 272, 449, 769, 1361
DdeI	CTNAG	4 cut(s)	720, 1102, 1231, 1391
DpnI	GATC	9 cut(s)	168, 406, 597, 618, 908, 1086, 1320, 1403, 1501
DpnII	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
Eam1104I	CTCTTC	5 cut(s)	2, 596, 1045, 1625, 1676
EarI	CTCTTC	5 cut(s)	2, 596, 1045, 1625, 1676
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	1179, 1469
Eco24I	GRGCYC	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	1137
Eco47III	AGCGCT	1 cut(s)	1657
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	1128
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	2 cut(s)	520, 1097
EcoRII	CCWGG	2 cut(s)	431, 930
EcoRV	GATATC	1 cut(s)	1137
EcoT14I	CCWWGG	2 cut(s)	1179, 1469
EcoT22I	ATGCAT	2 cut(s)	660, 1343
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	1179, 1469
Esp3I	CGTCTC	2 cut(s)	4, 708
FaeI	CATG	9 cut(s)	239, 307, 658, 662, 677, 834, 1183, 1325, 1345
FaqI	GGGAC	4 cut(s)	176, 477, 616, 1288
FatI	CATG	9 cut(s)	235, 303, 654, 658, 673, 830, 1179, 1321, 1341
FauI	CCCGC	1 cut(s)	1369
FbaI	TGATCA	1 cut(s)	1318
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	8 cut(s)	117, 138, 638, 699, 1326, 1388, 1535, 1654
FokI	GGATG	5 cut(s)	767, 1162, 1214, 1366, 1439
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	8 cut(s)	117, 138, 638, 699, 1326, 1388, 1535, 1654
FspBI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
GlaI	GCGC	1 cut(s)	1657
GluI	GCNGC	8 cut(s)	117, 138, 638, 699, 1326, 1388, 1535, 1654
HaeII	RGCGCY	1 cut(s)	1659
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	1658
Hin1II	CATG	9 cut(s)	239, 307, 658, 662, 677, 834, 1183, 1325, 1345
Hin6I	GCGC	1 cut(s)	1656
HinP1I	GCGC	1 cut(s)	1656
HindIII	AAGCTT	2 cut(s)	437, 1311
HinfI	GANTC	7 cut(s)	154, 228, 366, 464, 822, 1256, 1664
HphI	GGTGA	3 cut(s)	1471, 1540, 1606
Hpy166II	GTNNAC	3 cut(s)	51, 451, 1715
Hpy188III	TCNNGA	4 cut(s)	212, 517, 760, 1405
Hpy8I	GTNNAC	3 cut(s)	51, 451, 1715
HpyAV	CCTTC	7 cut(s)	554, 579, 836, 1002, 1012, 1402, 1594
HpyCH4III	ACNGT	2 cut(s)	940, 1719
HpyCH4IV	ACGT	2 cut(s)	836, 1711
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 134, 646, 655, 1112, 1387, 1653
HpyF3I	CTNAG	4 cut(s)	720, 1102, 1231, 1391
HpySE526I	ACGT	2 cut(s)	836, 1711
Hsp92II	CATG	9 cut(s)	239, 307, 658, 662, 677, 834, 1183, 1325, 1345
HspAI	GCGC	1 cut(s)	1656
Ksp22I	TGATCA	1 cut(s)	1318
Kzo9I	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
LguI	GCTCTTC	1 cut(s)	596
LmnI	GCTCC	1 cut(s)	654
Lsp1109I	GCAGC	8 cut(s)	103, 124, 649, 685, 1337, 1399, 1546, 1665
LweI	GCATC	3 cut(s)	1184, 1521, 1656
MaeI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
MaeII	ACGT	2 cut(s)	836, 1711
MaeIII	GTNAC	5 cut(s)	545, 710, 877, 1051, 1118
MalI	GATC	9 cut(s)	168, 406, 597, 618, 908, 1086, 1320, 1403, 1501
MboI	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
MfeI	CAATTG	3 cut(s)	601, 1382, 1676
MflI	RGATCY	3 cut(s)	166, 616, 1084
MhlI	GDGCHC	1 cut(s)	651
MlyI	GAGTC	1 cut(s)	816
MmeI	TCCRAC	1 cut(s)	1129
Mph1103I	ATGCAT	2 cut(s)	660, 1343
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	4 cut(s)	393, 953, 1349, 1436
MslI	CAYNNNNRTG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	433, 932
MunI	CAATTG	3 cut(s)	601, 1382, 1676
Mva1269I	GAATGC	3 cut(s)	580, 1343, 1468
MvaI	CCWGG	2 cut(s)	433, 932
MwoI	GCNNNNNNNGC	7 cut(s)	125, 134, 646, 655, 1112, 1387, 1653
NcoI	CCATGG	1 cut(s)	1179
NdeII	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
NlaIII	CATG	9 cut(s)	239, 307, 658, 662, 677, 834, 1183, 1325, 1345
NmuCI	GTSAC	2 cut(s)	545, 1118
NsiI	ATGCAT	2 cut(s)	660, 1343
NspI	RCATGY	2 cut(s)	662, 1345
PaeI	GCATGC	2 cut(s)	662, 1345
PciSI	GCTCTTC	1 cut(s)	596
PctI	GAATGC	3 cut(s)	580, 1343, 1468
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	6 cut(s)	154, 228, 366, 464, 1256, 1664
PflFI	GACNNNGTC	1 cut(s)	628
PflMI	CCANNNNNTGG	2 cut(s)	502, 1712
PfoI	TCCNGGA	1 cut(s)	431
PkrI	GCNGC	8 cut(s)	118, 139, 639, 700, 1327, 1389, 1536, 1655
PleI	GAGTC	1 cut(s)	816
PpsI	GAGTC	1 cut(s)	816
PshBI	ATTAAT	1 cut(s)	1436
PsiI	TTATAA	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	431, 930
PspGI	CCWGG	2 cut(s)	431, 930
PstI	CTGCAG	3 cut(s)	205, 639, 893
PsuI	RGATCY	3 cut(s)	166, 616, 1084
PsyI	GACNNNGTC	1 cut(s)	628
RsaI	GTAC	5 cut(s)	75, 273, 450, 770, 1362
RsaNI	GTAC	5 cut(s)	74, 272, 449, 769, 1361
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	596
SaqAI	TTAA	4 cut(s)	393, 953, 1349, 1436
SatI	GCNGC	8 cut(s)	117, 138, 638, 699, 1326, 1388, 1535, 1654
Sau3AI	GATC	9 cut(s)	166, 404, 595, 616, 906, 1084, 1318, 1401, 1499
SchI	GAGTC	1 cut(s)	816
ScrFI	CCNGG	2 cut(s)	433, 932
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	3 cut(s)	1184, 1521, 1656
SfcI	CTRYAG	3 cut(s)	201, 635, 889
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	3 cut(s)	212, 758, 1538
SmoI	CTYRAG	3 cut(s)	212, 758, 1538
SphI	GCATGC	2 cut(s)	662, 1345
SsiI	CCGC	2 cut(s)	158, 1376
SspMI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	431, 930
StyI	CCWWGG	2 cut(s)	1179, 1469
TaaI	ACNGT	2 cut(s)	940, 1719
TaiI	ACGT	2 cut(s)	839, 1714
TaqI	TCGA	2 cut(s)	594, 856
TatI	WGTACW	3 cut(s)	73, 271, 448
TfiI	GAWTC	6 cut(s)	154, 228, 366, 464, 1256, 1664
Tru1I	TTAA	4 cut(s)	393, 953, 1349, 1436
Tru9I	TTAA	4 cut(s)	393, 953, 1349, 1436
TscAI	CASTG	2 cut(s)	748, 1083
TseFI	GTSAC	2 cut(s)	545, 1118
TseI	GCWGC	8 cut(s)	116, 137, 637, 698, 1325, 1387, 1534, 1653
Tsp45I	GTSAC	2 cut(s)	545, 1118
TspDTI	ATGAA	5 cut(s)	339, 573, 680, 828, 1643
TspRI	CASTG	2 cut(s)	748, 1083
Tth111I	GACNNNGTC	1 cut(s)	628
Van91I	CCANNNNNTGG	2 cut(s)	502, 1712
VspI	ATTAAT	1 cut(s)	1436
XapI	RAATTY	5 cut(s)	131, 246, 252, 520, 1097
XceI	RCATGY	2 cut(s)	662, 1345
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
Zsp2I	ATGCAT	2 cut(s)	660, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.