Rw1G012390

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009358
Physical Location & Seq
Forward (+)
27597207 .. 27598573
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012390.1

Sequence Viewer

Length: 1119 bp
ATGGAGAAGAGACGAAGCAAAGATACATCATTGTGGTTGCCCAAGTCTACATCGGATATGCAACTAAATGTACTTGGTGGTCAGCCATTCACTATGGACAAAGAGCTTCTGGCTGCAAAATCAGCCAAATTTGCTGCTACACTCAAAGAGAATCCGCAGGAAGATCTTGCCAACTTCCTCCAAAGTGTCCCTGCTACTGCAGACACTCTTGAGCTTGTTGCGAGATTCTATCATGGCTTTGAAATTCAAATTTGCAGTCAGAATGTTGTACAGCTCATTTGCGTTGCTGACTACTTGGACATGACTGAAAACCACAGCAAAGATAATTTATTACACAAAGCTATTTCATATTTTCAACAAAGAATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTCCGATCCACAGAAAAGGTATTTCAACAATCCTGGAAGCTTGGATTAGTACACGAATGTTTGGATTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGCGAACCAATCAAGAATTCTACTGCAAATGCTGATGATAGTGACGAGGATTATGAAGGTTATAAGCCGAATGCAAGGAGAAGGCTCTTCGATCTCAATTGGAAACCAGAGGATCTAACGACATTGTCCCTGCAGCTTTATGAGCTCCTCATGCATGCAATGAATAAGCATGGAGTTCCATCAGAATATGTGGCTGCATCTCTTTGTAACTACACTAAGAAATGGGTTTTCTCTAGCAGTGGAGAGGAAGCACTCAAGAAAAAGTACCAAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCTGATGAAATAGGACTCCTTCCATGCACGTTGTTGTTTCAAATGCTTCGAGTTGCTATTTATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAATTGGAAAACAACTTGACCAGGCAACAGTCAAAGACCTCTTAATACCATCTCACGGCTATTCTAAAGTAGTGCAATATGATATTCAATGCCCCAGGTCCCTTTTGGGTCTGGCCTCCATTTCCTTCATCACTTCCCATGGCAACAACCCCAGCAAACTGCACATGGCGCTGATCCCCGCCGGGGGAATTCACAGGGGACCCTGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

372

Amino Acids

41.92

Weight (kDa)

6.8

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 13 - 103 3.8e-06 BTB/POZ domain
NPH3 PF03000 200 - 338 1e-34 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 47
AciI CCGC 2 cut(s) 155, 1086
AclWI GGATC 3 cut(s) 396, 621, 1075
AcsI RAATTY 5 cut(s) 128, 243, 249, 517, 1095
AfaI GTAC 4 cut(s) 72, 270, 447, 767
AfiI CCNNNNNNNGG 4 cut(s) 499, 962, 1090, 1091
AgsI TTSAA 7 cut(s) 242, 248, 356, 422, 785, 845, 995
AjnI CCWGG 3 cut(s) 428, 927, 1001
AjuI GAANNNNNNNTTGG 2 cut(s) 502, 534
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 3 cut(s) 396, 621, 1075
AoxI GGCC 1 cut(s) 1020
ApeKI GCWGC 5 cut(s) 113, 134, 634, 695, 1113
ApoI RAATTY 5 cut(s) 128, 243, 249, 517, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AspLEI GCGC 1 cut(s) 1078
AspS9I GGNCC 2 cut(s) 1005, 1106
AsuC2I CCSGG 1 cut(s) 1090
AvaII GGWCC 2 cut(s) 1005, 1106
BanII GRGCYC 1 cut(s) 648
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 4 cut(s) 100, 121, 646, 682
BccI CCATC 2 cut(s) 688, 964
BceAI ACGGC 1 cut(s) 979
BciT130I CCWGG 3 cut(s) 430, 929, 1003
BcnI CCSGG 1 cut(s) 1090
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 3 cut(s) 372, 486, 735
BfmI CTRYAG 4 cut(s) 198, 632, 886, 1111
BfoI RGCGCY 1 cut(s) 1079
BglII AGATCT 1 cut(s) 163
BisI GCNGC 5 cut(s) 114, 135, 635, 696, 1114
BlsI GCNGC 5 cut(s) 115, 136, 636, 697, 1115
Bme1390I CCNGG 4 cut(s) 430, 929, 1003, 1090
Bme18I GGWCC 2 cut(s) 1005, 1106
BmgT120I GGNCC 2 cut(s) 1005, 1106
BmiI GGNNCC 3 cut(s) 1007, 1107, 1108
BmrFI CCNGG 4 cut(s) 430, 929, 1003, 1090
BmsI GCATC 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 230, 740
BpuMI CCSGG 1 cut(s) 1090
BsaBI GATNNNNATC 1 cut(s) 902
BsaJI CCNNGG 3 cut(s) 1001, 1045, 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 499, 962, 1090, 1091
Bse3DI GCAATG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 3 cut(s) 430, 929, 1003
BseDI CCNNGG 3 cut(s) 1001, 1045, 1089
BseGI GGATG 1 cut(s) 777
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 4 cut(s) 499, 962, 1090, 1091
BseMI GCAATG 1 cut(s) 666
BseRI GAGGAG 1 cut(s) 638
BseXI GCAGC 4 cut(s) 100, 121, 646, 682
BseYI CCCAGC 1 cut(s) 1058
BsgI GTGCAG 1 cut(s) 1052
BshFI GGCC 1 cut(s) 1022
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 1 cut(s) 1089
BslFI GGGAC 4 cut(s) 173, 474, 613, 991
BslI CCNNNNNNNGG 4 cut(s) 499, 962, 1090, 1091
BsmAI GTCTC 1 cut(s) 4
BsmBI CGTCTC 1 cut(s) 4
BsmFI GGGAC 4 cut(s) 173, 474, 613, 991
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 1 cut(s) 1022
Bsp1286I GDGCHC 1 cut(s) 648
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 2 cut(s) 155, 1086
BspANI GGCC 1 cut(s) 1022
BspLI GGNNCC 3 cut(s) 1007, 1107, 1108
BspMAI CTGCAG 4 cut(s) 202, 636, 890, 1115
BspPI GGATC 3 cut(s) 396, 621, 1075
BspQI GCTCTTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 666
BsrGI TGTACA 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 1001, 1045, 1089
BssMI GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
BssT1I CCWWGG 1 cut(s) 1045
Bst2UI CCWGG 3 cut(s) 430, 929, 1003
Bst4CI ACNGT 1 cut(s) 937
Bst6I CTCTTC 2 cut(s) 2, 593
BstAUI TGTACA 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 1045
BstF5I GGATG 1 cut(s) 777
BstH2I RGCGCY 1 cut(s) 1079
BstHHI GCGC 1 cut(s) 1078
BstKTI GATC 6 cut(s) 166, 404, 595, 616, 906, 1083
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
BstMWI GCNNNNNNNGC 5 cut(s) 122, 131, 643, 652, 1075
BstNI CCWGG 3 cut(s) 430, 929, 1003
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 4 cut(s) 428, 927, 1001, 1088
BstSFI CTRYAG 4 cut(s) 198, 632, 886, 1111
BstV1I GCAGC 4 cut(s) 100, 121, 646, 682
BstX2I RGATCY 2 cut(s) 163, 613
BstYI RGATCY 2 cut(s) 163, 613
BsuRI GGCC 1 cut(s) 1022
BtgI CCRYGG 1 cut(s) 1045
BtsCI GGATG 1 cut(s) 777
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 657
CfoI GCGC 1 cut(s) 1078
Cfr13I GGNCC 2 cut(s) 1005, 1106
Csp6I GTAC 4 cut(s) 71, 269, 446, 766
CviAII CATG 8 cut(s) 233, 301, 652, 656, 671, 828, 1046, 1072
CviQI GTAC 4 cut(s) 71, 269, 446, 766
DdeI CTNAG 1 cut(s) 717
DpnI GATC 6 cut(s) 165, 403, 594, 615, 905, 1082
DpnII GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
Eam1104I CTCTTC 2 cut(s) 2, 593
EarI CTCTTC 2 cut(s) 2, 593
Ecl136II GAGCTC 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 1045
Eco24I GRGCYC 1 cut(s) 648
Eco47I GGWCC 2 cut(s) 1005, 1106
Eco53kI GAGCTC 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 646
EcoO109I RGGNCCY 2 cut(s) 1005, 1106
EcoRI GAATTC 2 cut(s) 517, 1095
EcoRII CCWGG 3 cut(s) 428, 927, 1001
EcoT14I CCWWGG 1 cut(s) 1045
EcoT22I ATGCAT 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 1045
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 8 cut(s) 236, 304, 655, 659, 674, 831, 1049, 1075
FaqI GGGAC 4 cut(s) 173, 474, 613, 991
FatI CATG 8 cut(s) 232, 300, 651, 655, 670, 827, 1045, 1071
FauI CCCGC 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 5 cut(s) 114, 135, 635, 696, 1114
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 5 cut(s) 114, 135, 635, 696, 1114
FspBI CTAG 3 cut(s) 372, 486, 735
GlaI GCGC 1 cut(s) 1077
GluI GCNGC 5 cut(s) 114, 135, 635, 696, 1114
GsaI CCCAGC 1 cut(s) 1062
HaeII RGCGCY 1 cut(s) 1079
HaeIII GGCC 1 cut(s) 1022
HapII CCGG 1 cut(s) 1089
HhaI GCGC 1 cut(s) 1078
Hin1II CATG 8 cut(s) 236, 304, 655, 659, 674, 831, 1049, 1075
Hin6I GCGC 1 cut(s) 1076
HinP1I GCGC 1 cut(s) 1076
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 5 cut(s) 151, 225, 363, 461, 819
HpaII CCGG 1 cut(s) 1089
Hpy166II GTNNAC 2 cut(s) 48, 448
Hpy188I TCNGA 7 cut(s) 55, 261, 382, 401, 685, 883, 908
Hpy188III TCNNGA 3 cut(s) 209, 514, 757
Hpy8I GTNNAC 2 cut(s) 48, 448
HpyAV CCTTC 4 cut(s) 551, 576, 833, 1042
HpyCH4III ACNGT 1 cut(s) 937
HpyCH4IV ACGT 1 cut(s) 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 131, 643, 652, 1075
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 1 cut(s) 833
Hsp92II CATG 8 cut(s) 236, 304, 655, 659, 674, 831, 1049, 1075
HspAI GCGC 1 cut(s) 1076
KflI GGGWCCC 1 cut(s) 1106
Kzo9I GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 1 cut(s) 651
Lsp1109I GCAGC 4 cut(s) 100, 121, 646, 682
LweI GCATC 1 cut(s) 707
MaeI CTAG 3 cut(s) 372, 486, 735
MaeII ACGT 1 cut(s) 833
MaeIII GTNAC 3 cut(s) 542, 707, 874
MalI GATC 6 cut(s) 165, 403, 594, 615, 905, 1082
MboI GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
MboII GAAGA 3 cut(s) 19, 173, 580
MfeI CAATTG 1 cut(s) 598
MflI RGATCY 2 cut(s) 163, 613
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 8 cut(s) 128, 243, 249, 325, 517, 598, 909, 1095
MlyI GAGTC 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 657
MseI TTAA 2 cut(s) 390, 950
MslI CAYNNNNRTG 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 1116
MspI CCGG 1 cut(s) 1089
MspR9I CCNGG 4 cut(s) 430, 929, 1003, 1090
MunI CAATTG 1 cut(s) 598
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 3 cut(s) 430, 929, 1003
MwoI GCNNNNNNNGC 5 cut(s) 122, 131, 643, 652, 1075
NciI CCSGG 1 cut(s) 1090
NcoI CCATGG 1 cut(s) 1045
NdeII GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
NlaIII CATG 8 cut(s) 236, 304, 655, 659, 674, 831, 1049, 1075
NlaIV GGNNCC 3 cut(s) 1007, 1107, 1108
NmuCI GTSAC 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 1 cut(s) 659
PaeI GCATGC 1 cut(s) 659
PciSI GCTCTTC 1 cut(s) 593
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 4 cut(s) 151, 225, 363, 461
PflFI GACNNNGTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 5 cut(s) 115, 136, 636, 697, 1115
PleI GAGTC 1 cut(s) 813
PpsI GAGTC 1 cut(s) 813
PpuMI RGGWCCY 2 cut(s) 1005, 1106
PsiI TTATAA 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 648
Psp5II RGGWCCY 2 cut(s) 1005, 1106
Psp6I CCWGG 3 cut(s) 428, 927, 1001
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 3 cut(s) 428, 927, 1001
PspN4I GGNNCC 3 cut(s) 1007, 1107, 1108
PspPI GGNCC 2 cut(s) 1005, 1106
PspPPI RGGWCCY 2 cut(s) 1005, 1106
PstI CTGCAG 4 cut(s) 202, 636, 890, 1115
PsuI RGATCY 2 cut(s) 163, 613
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 1116
RsaI GTAC 4 cut(s) 72, 270, 447, 767
RsaNI GTAC 4 cut(s) 71, 269, 446, 766
RseI CAYNNNNRTG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 648
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 390, 950
SatI GCNGC 5 cut(s) 114, 135, 635, 696, 1114
Sau3AI GATC 6 cut(s) 163, 401, 592, 613, 903, 1080
Sau96I GGNCC 2 cut(s) 1005, 1106
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 4 cut(s) 430, 929, 1003, 1090
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 4 cut(s) 198, 632, 886, 1111
SinI GGWCC 2 cut(s) 1005, 1106
SmiMI CAYNNNNRTG 1 cut(s) 31
SmlI CTYRAG 2 cut(s) 209, 755
SmoI CTYRAG 2 cut(s) 209, 755
SphI GCATGC 1 cut(s) 659
Sse9I AATT 8 cut(s) 128, 243, 249, 325, 517, 598, 909, 1095
SsiI CCGC 2 cut(s) 155, 1086
SspMI CTAG 3 cut(s) 372, 486, 735
SstI GAGCTC 1 cut(s) 648
StyD4I CCNGG 4 cut(s) 428, 927, 1001, 1088
StyI CCWWGG 1 cut(s) 1045
TaaI ACNGT 1 cut(s) 937
TaiI ACGT 1 cut(s) 836
TaqI TCGA 2 cut(s) 591, 853
TasI AATT 8 cut(s) 128, 243, 249, 325, 517, 598, 909, 1095
TatI WGTACW 3 cut(s) 70, 268, 445
TfiI GAWTC 4 cut(s) 151, 225, 363, 461
Tru1I TTAA 2 cut(s) 390, 950
Tru9I TTAA 2 cut(s) 390, 950
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 5 cut(s) 113, 134, 634, 695, 1113
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 5 cut(s) 336, 570, 677, 825, 1024
TspRI CASTG 1 cut(s) 745
Tth111I GACNNNGTC 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 1005, 1106
XapI RAATTY 5 cut(s) 128, 243, 249, 517, 1095
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 3 cut(s) 372, 486, 735
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.