Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265129.1

Orthogroup ID

OG0009358

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 816

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265129.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

tgaaactattaaggctttccgatccacagaaaaggtatttcaacaatcctggaagcttggattagtacacgaatgtttggattctatcattagaaaggcaaaagctagtccccaacttctgggcgaaccaatcaagaattctactgcaaatgctgatgatagtgacgaggattatgaaggttataagccgaatgcaaggagaaggctcttcgatctcaattggaaaccagaggatctaacgacattgtccctgcagctttatgagctcctcatgcatgcaatgaataagcatggagttccatcagaatatgtggctgcatctctttgtaactacactaagaaatgggttttctctagcagtggagaggaagcactcaagaaaaagtaccaaaaggacatccttgaagcagttgagaggcttttgcctgatgaaataggactccttccatgcacgttgttgtttcaaatgcttcgagttgctatttatttggaagttacctctgactgcagaaatgggattgagatcagaattggaaaacaacttgaccaggcaacagtcaaagacctcttaataccatctcacggctattctaaagtagtgcaatatgatattcaatgtgtgagaaggattgtgaaggttttctatgctaattactcttcttcaaatgtaactgacataactggtctaatagcagtggcagatctcattgaagaattcttagctgaagttgctagtgacatagacttgaagatatctacatttgttggattagcagagatgttggtttcagcatccatgggagtaaaaacaaactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

272

Amino Acids

30.59

Weight (kDa)

5.54

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03510 AT5G17580 AT5G17580
fragaria_vesca	FvH4_7g07100
malus_domestica	MD02G1239800.v1.1 MD02G1239900.v1.1 MD07G1076800.v1.1
prunus_persica	Prupe.2G097900_v2.0.a1 Prupe.2G097900_v2.0.a1
pyrus_communis	pycom07g06040
rosa_chinensis	RchiOBHm_Chr1g0337041
rosa_laevigata	RLG00000029309
rosa_multiflora	Rmu_co8265129.1_g000001 Rmu_sc0009742.1_g000014
rosa_roxburghii	Rroxscaffold_4G00315000
rosa_rugosa	Rorug01G0130800
rosa_samantha	Rh1AG151400 Rh1BG120400 Rh1CG142600 Rh1CG250700 Rh1DG158600
rosa_wichuraiana	Rw1G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	119
AclWI	GGATC	2 cut(s)	16, 241
AcsI	RAATTY	2 cut(s)	137, 714
AcuI	CTGAAG	1 cut(s)	745
AfaI	GTAC	2 cut(s)	67, 387
AfiI	CCNNNNNNNGG	2 cut(s)	119, 582
AgsI	TTSAA	7 cut(s)	42, 405, 465, 615, 664, 711, 749
AjnI	CCWGG	2 cut(s)	48, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	5 cut(s)	56, 105, 257, 266, 723
AluI	AGCT	5 cut(s)	56, 105, 257, 266, 723
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	16, 241
ApeKI	GCWGC	2 cut(s)	254, 315
ApoI	RAATTY	2 cut(s)	137, 714
Asp700I	GAANNNNTTC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	266, 302
BccI	CCATC	2 cut(s)	308, 584
BceAI	ACGGC	1 cut(s)	599
BciT130I	CCWGG	2 cut(s)	50, 549
BfaI	CTAG	3 cut(s)	106, 355, 733
BfmI	CTRYAG	2 cut(s)	252, 506
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	2 cut(s)	255, 316
BlsI	GCNGC	2 cut(s)	256, 317
Bme1390I	CCNGG	2 cut(s)	50, 549
BmrFI	CCNGG	2 cut(s)	50, 549
BmsI	GCATC	2 cut(s)	327, 801
BpuEI	CTTGAG	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 582
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	50, 549
BseDI	CCNNGG	1 cut(s)	796
BseGI	GGATG	2 cut(s)	397, 792
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	119, 582
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	266, 302
BsiHKAI	GWGCWC	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	94, 233
BslI	CCNNNNNNNGG	2 cut(s)	119, 582
BsmFI	GGGAC	2 cut(s)	94, 233
BsmI	GAATGC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	21, 212, 233, 523, 701
Bsp19I	CCATGG	1 cut(s)	796
BspMAI	CTGCAG	2 cut(s)	256, 510
BspPI	GGATC	2 cut(s)	16, 241
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	1 cut(s)	796
BssMI	GATC	5 cut(s)	21, 212, 233, 523, 701
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	2 cut(s)	50, 549
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	2 cut(s)	213, 662
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	337, 719
BstDSI	CCRYGG	1 cut(s)	796
BstF5I	GGATG	2 cut(s)	397, 792
BstKTI	GATC	5 cut(s)	24, 215, 236, 526, 704
BstMBI	GATC	5 cut(s)	21, 212, 233, 523, 701
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 272, 729
BstNI	CCWGG	2 cut(s)	50, 549
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	48, 547
BstSFI	CTRYAG	2 cut(s)	252, 506
BstV1I	GCAGC	2 cut(s)	266, 302
BstX2I	RGATCY	2 cut(s)	233, 701
BstYI	RGATCY	2 cut(s)	233, 701
BtgI	CCRYGG	1 cut(s)	796
BtsCI	GGATG	2 cut(s)	397, 792
BtsI	GCAGTG	2 cut(s)	365, 700
BtsIMutI	CAGTG	2 cut(s)	365, 700
Cac8I	GCNNGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	66, 386
CviAII	CATG	5 cut(s)	272, 276, 291, 448, 797
CviQI	GTAC	2 cut(s)	66, 386
DdeI	CTNAG	2 cut(s)	337, 719
DpnI	GATC	5 cut(s)	23, 214, 235, 525, 703
DpnII	GATC	5 cut(s)	21, 212, 233, 523, 701
Eam1104I	CTCTTC	2 cut(s)	213, 662
EarI	CTCTTC	2 cut(s)	213, 662
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	266
EcoRI	GAATTC	2 cut(s)	137, 714
EcoRII	CCWGG	2 cut(s)	48, 547
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	796
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	796
FaeI	CATG	5 cut(s)	275, 279, 294, 451, 800
FaqI	GGGAC	2 cut(s)	94, 233
FatI	CATG	5 cut(s)	271, 275, 290, 447, 796
Fnu4HI	GCNGC	2 cut(s)	255, 316
FokI	GGATG	2 cut(s)	384, 779
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	2 cut(s)	255, 316
FspBI	CTAG	3 cut(s)	106, 355, 733
GluI	GCNGC	2 cut(s)	255, 316
Hin1II	CATG	5 cut(s)	275, 279, 294, 451, 800
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	81, 439
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	4 cut(s)	21, 305, 503, 528
Hpy188III	TCNNGA	2 cut(s)	134, 377
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	5 cut(s)	171, 196, 453, 619, 629
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	9 cut(s)	147, 195, 254, 275, 279, 318, 451, 508, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 272, 729
HpyF3I	CTNAG	2 cut(s)	337, 719
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	275, 279, 294, 451, 800
Kzo9I	GATC	5 cut(s)	21, 212, 233, 523, 701
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	9 cut(s)	35, 62, 105, 241, 264, 439, 534, 561, 667
Lsp1109I	GCAGC	2 cut(s)	266, 302
LweI	GCATC	2 cut(s)	327, 801
MaeI	CTAG	3 cut(s)	106, 355, 733
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	5 cut(s)	162, 327, 494, 668, 735
MalI	GATC	5 cut(s)	23, 214, 235, 525, 703
MboI	GATC	5 cut(s)	21, 212, 233, 523, 701
MboII	GAAGA	5 cut(s)	200, 649, 652, 723, 761
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	2 cut(s)	233, 701
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	5 cut(s)	137, 218, 529, 650, 714
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	746
MnlI	CCTC	7 cut(s)	161, 224, 279, 359, 409, 509, 576
Mph1103I	ATGCAT	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	2 cut(s)	10, 570
MspR9I	CCNGG	2 cut(s)	50, 549
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	2 cut(s)	50, 549
MwoI	GCNNNNNNNGC	3 cut(s)	263, 272, 729
NcoI	CCATGG	1 cut(s)	796
NdeII	GATC	5 cut(s)	21, 212, 233, 523, 701
NlaIII	CATG	5 cut(s)	275, 279, 294, 451, 800
NmuCI	GTSAC	2 cut(s)	162, 735
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	256, 317
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PsiI	TTATAA	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	48, 547
PspGI	CCWGG	2 cut(s)	48, 547
PstI	CTGCAG	2 cut(s)	256, 510
PsuI	RGATCY	2 cut(s)	233, 701
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	2 cut(s)	67, 387
RsaNI	GTAC	2 cut(s)	66, 386
SacI	GAGCTC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	10, 570
SatI	GCNGC	2 cut(s)	255, 316
Sau3AI	GATC	5 cut(s)	21, 212, 233, 523, 701
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	2 cut(s)	50, 549
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	327, 801
SfcI	CTRYAG	2 cut(s)	252, 506
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	5 cut(s)	137, 218, 529, 650, 714
SspMI	CTAG	3 cut(s)	106, 355, 733
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	48, 547
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	211, 473
TasI	AATT	5 cut(s)	137, 218, 529, 650, 714
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	10, 570
Tru9I	TTAA	2 cut(s)	10, 570
TscAI	CASTG	2 cut(s)	365, 700
TseFI	GTSAC	2 cut(s)	162, 735
TseI	GCWGC	2 cut(s)	254, 315
Tsp45I	GTSAC	2 cut(s)	162, 735
TspDTI	ATGAA	3 cut(s)	190, 297, 445
TspRI	CASTG	2 cut(s)	365, 700
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	119
XapI	RAATTY	2 cut(s)	137, 714
XceI	RCATGY	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	3 cut(s)	106, 355, 733
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.