Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009358

Physical Location & Seq

Genomic Coordinates Forward (+)

7066061 .. 7068964

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGGAGAAGAAACGAAGCAAAGATACATCTGCATTGTGGCTGCCTAAGTCTACACCAGATTGGCAACTAAATGTACGTGGTTGTCAGCATGGTCAGGCATTCACTATGGACAAAGAGCTTCTGGCTGCAAAATCAGCCAAATTTGCTGCTAGACTCAAAGAGAATCCGCAGGAAGATCTTTCTAACTTCCTCCATAGTGTCCCTGCTGATGCGGAAACTATTGAGCTTGTTGCGAGATTCTATCATGGCTATGAACTACAAATTTGCAGTCAGAATGTTGTACAGCTCATTTCCGTTGCTGACTATTTGGAGATGACTGAAAGCCACTGCAAAGATAATCTATTGAACAAAGCTGTTTCGTATTTTCAACAAAGAATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTGCAATCCACAGAAAAGTTATTTCAACAACCCTTGAAGCTTGAGTTAGTACACGCCTGTTTGGACTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGTGAACCAATACGGAATTCAACTGCAAATGTTGATGATAGCGATGAGGATTATGAAATTTATAAGCCAAATGCAAGAAGAAGGCTCTTCGATTTTGATTGGAAATCAGAGGATCTAACTACATTGTCCCTCCAGCTTTATGAGCCTCTCATGCATGGAATGAATAAGCATGGAGTTCCATCACAGTATGTGGCAGCATCTCTTTGTGACTACATTAAGAAATGGGTTTTCTGTGGCAGGGGAGAGGAAGCACACAAGAAAAGGTACCAAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCAGATGAAATAGGACTCCTTCCATGCACGTTGTTGTTCCAAATGCTTCGACATGCTATATATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAACTGGAAAACAACTTGACCAAGCAACAGTTCAAGACCTATTAATACCATCTCAAGGCTATTCTAAGGTACTGCAGTATGATATTCAATGTGTGAGGAGAATTGTGAAGGTTTTCTATGCTAATTACTCTTCATCAAATGTATCTGACGTAACTGGTCTAATAGCAGTCGCAGATCTCATTGAAGAATTCTTGGCTGAAGTTGCTAGTGACATAGACTTGAAGATATCTACATTTGTCGGATTAGCAGAGATGTTGATTTCAGCATCCATGGGAGTAAAAACAAACTCAGATGGAATATACAGGGCTGTTTCTATATACTTAGATAAGCACAGACACATGACAGAATCCGAGCGAGAAGAAGTGTGTCAAGTTCTGGATTTCCAAAAGATGTCCCCTCAAGCCTGTGATCATGCTGCCAAAAACGAAAGCTTGCCATTAAGGATGGTGCTACAGGTGTTGTTTGCAGGGCAGTTGCAGCTGCGAGACACCATCACGAAAGAGGTGCAGAGTTCGGATGAAAAATTAGTAAAAGAAGAAGCTTACGAGGTTAATGCACCAAAGTTGGATTTGTGTGAGGTCAAAATGAGATCAGAGGTGGAGAAAATGAGCAAGAAGGTGATGCAGCTTGAGAGACAGTGCAGTATGATGAGAAAAGAGATCGAGAACAGCTCTAGCCTTATGGTGAGGAAGGAGAAAACTAGCTTGTGGAGAGAAATGAAGAGAAAGTTTGGTTGCATCAGCAGCGCTCATGATTCTGACTGCCAATTGAAGAAGAAAAAGTTGCCTCCGAGACCAAAACTTGGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

577

Amino Acids

65.83

Weight (kDa)

6.7

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	18 - 113	3.6e-06	BTB/POZ domain
NPH3	PF03000	204 - 442	5.8e-69	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03510 AT5G17580 AT5G17580
fragaria_vesca	FvH4_7g07100
malus_domestica	MD02G1239800.v1.1 MD02G1239900.v1.1 MD07G1076800.v1.1
prunus_persica	Prupe.2G097900_v2.0.a1 Prupe.2G097900_v2.0.a1
pyrus_communis	pycom07g06040
rosa_chinensis	RchiOBHm_Chr1g0337041
rosa_laevigata	RLG00000029309
rosa_multiflora	Rmu_co8265129.1_g000001 Rmu_sc0009742.1_g000014
rosa_roxburghii	Rroxscaffold_4G00315000
rosa_rugosa	Rorug01G0130800
rosa_samantha	Rh1AG151400 Rh1BG120400 Rh1CG142600 Rh1CG250700 Rh1DG158600
rosa_wichuraiana	Rw1G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
Acc65I	GGTACC	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	777
AccB7I	CCANNNNNTGG	2 cut(s)	511, 1721
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	167, 212
AclWI	GGATC	1 cut(s)	633
AcsI	RAATTY	5 cut(s)	140, 261, 529, 570, 1106
AcuI	CTGAAG	1 cut(s)	1137
AfaI	GTAC	5 cut(s)	75, 282, 459, 779, 990
AfeI	AGCGCT	1 cut(s)	1666
AfiI	CCNNNNNNNGG	3 cut(s)	511, 974, 1721
AjuI	GAANNNNNNNTTGG	4 cut(s)	514, 546, 933, 965
Alw26I	GTCTC	3 cut(s)	1398, 1546, 1705
AlwI	GGATC	1 cut(s)	633
Aor51HI	AGCGCT	1 cut(s)	1666
ApeKI	GCWGC	9 cut(s)	40, 125, 146, 707, 1334, 1396, 1399, 1543, 1662
ApoI	RAATTY	5 cut(s)	140, 261, 529, 570, 1106
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AseI	ATTAAT	1 cut(s)	962
Asp700I	GAANNNNTTC	1 cut(s)	1031
Asp718I	GGTACC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	1667
AsuHPI	GGTGA	3 cut(s)	527, 1549, 1615
BaeI	ACNNNNGTAYC	2 cut(s)	980, 1013
BanI	GGYRCC	1 cut(s)	777
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
BbvI	GCAGC	9 cut(s)	27, 112, 133, 719, 1321, 1386, 1408, 1555, 1674
BccI	CCATC	5 cut(s)	700, 976, 1205, 1357, 1418
BcgI	CGANNNNNNTGC	4 cut(s)	1405, 1439, 1454, 1488
BclI	TGATCA	1 cut(s)	1327
BcoDI	GTCTC	3 cut(s)	1398, 1546, 1705
BfaI	CTAG	6 cut(s)	150, 384, 498, 1125, 1593, 1620
BfmI	CTRYAG	3 cut(s)	898, 992, 1370
BfoI	RGCGCY	1 cut(s)	1668
BglII	AGATCT	2 cut(s)	175, 1093
BisI	GCNGC	9 cut(s)	41, 126, 147, 708, 1335, 1397, 1400, 1544, 1663
BlsI	GCNGC	9 cut(s)	42, 127, 148, 709, 1336, 1398, 1401, 1545, 1664
BmiI	GGNNCC	1 cut(s)	779
BmsI	GCATC	5 cut(s)	199, 719, 1193, 1530, 1665
BplI	GAGNNNNNCTC	2 cut(s)	1574, 1606
BpmI	CTGGAG	1 cut(s)	629
BpuEI	CTTGAG	4 cut(s)	470, 957, 1302, 1568
BsaAI	YACGTR	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	914
BsaI	GGTCTC	1 cut(s)	1705
BsaJI	CCNNGG	1 cut(s)	1188
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 974, 1721
Bse1I	ACTGG	2 cut(s)	928, 1078
Bse8I	GATNNNNATC	1 cut(s)	914
BseDI	CCNNGG	1 cut(s)	1188
BseGI	GGATG	4 cut(s)	789, 1184, 1368, 1441
BseJI	GATNNNNATC	1 cut(s)	914
BseLI	CCNNNNNNNGG	3 cut(s)	511, 974, 1721
BseMII	CTCAG	1 cut(s)	1221
BseNI	ACTGG	2 cut(s)	928, 1078
BseRI	GAGGAG	1 cut(s)	1030
BseXI	GCAGC	9 cut(s)	27, 112, 133, 719, 1321, 1386, 1408, 1555, 1674
BsgI	GTGCAG	2 cut(s)	1445, 1579
BshNI	GGYRCC	1 cut(s)	777
BslFI	GGGAC	4 cut(s)	185, 486, 625, 1297
BslI	CCNNNNNNNGG	3 cut(s)	511, 974, 1721
BsmAI	GTCTC	3 cut(s)	1398, 1546, 1705
BsmFI	GGGAC	4 cut(s)	185, 486, 625, 1297
BsmI	GAATGC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	1705
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
Bsp19I	CCATGG	1 cut(s)	1188
BspACI	CCGC	2 cut(s)	167, 212
BspCNI	CTCAG	1 cut(s)	1220
BspHI	TCATGA	1 cut(s)	1669
BspLI	GGNNCC	1 cut(s)	779
BspMAI	CTGCAG	2 cut(s)	902, 996
BspPI	GGATC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	777
BspTNI	GGTCTC	1 cut(s)	1705
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	928, 1078
BssECI	CCNNGG	1 cut(s)	1188
BssMI	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
BssT1I	CCWWGG	1 cut(s)	1188
Bst4CI	ACNGT	3 cut(s)	699, 949, 1557
Bst6I	CTCTTC	3 cut(s)	605, 1054, 1634
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	1352
BstDEI	CTNAG	4 cut(s)	45, 984, 1207, 1240
BstDSI	CCRYGG	1 cut(s)	1188
BstF5I	GGATG	4 cut(s)	789, 1184, 1368, 1441
BstH2I	RGCGCY	1 cut(s)	1668
BstHHI	GCGC	1 cut(s)	1667
BstKTI	GATC	7 cut(s)	178, 628, 918, 1096, 1330, 1511, 1581
BstMAI	GTCTC	3 cut(s)	1398, 1546, 1705
BstMBI	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
BstMWI	GCNNNNNNNGC	7 cut(s)	134, 143, 655, 664, 1121, 1396, 1662
BstNSI	RCATGY	1 cut(s)	872
BstSFI	CTRYAG	3 cut(s)	898, 992, 1370
BstV1I	GCAGC	9 cut(s)	27, 112, 133, 719, 1321, 1386, 1408, 1555, 1674
BstX2I	RGATCY	3 cut(s)	175, 625, 1093
BstYI	RGATCY	3 cut(s)	175, 625, 1093
BtgI	CCRYGG	1 cut(s)	1188
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	4 cut(s)	789, 1184, 1368, 1441
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	325, 1562
Cac8I	GCNNGC	1 cut(s)	1352
CciI	TCATGA	1 cut(s)	1669
CfoI	GCGC	1 cut(s)	1667
Csp6I	GTAC	5 cut(s)	74, 281, 458, 778, 989
CviQI	GTAC	5 cut(s)	74, 281, 458, 778, 989
DdeI	CTNAG	4 cut(s)	45, 984, 1207, 1240
DpnI	GATC	7 cut(s)	177, 627, 917, 1095, 1329, 1510, 1580
DpnII	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
Eam1104I	CTCTTC	3 cut(s)	605, 1054, 1634
EarI	CTCTTC	3 cut(s)	605, 1054, 1634
Eco130I	CCWWGG	1 cut(s)	1188
Eco31I	GGTCTC	1 cut(s)	1705
Eco32I	GATATC	1 cut(s)	1146
Eco47III	AGCGCT	1 cut(s)	1666
Eco57I	CTGAAG	1 cut(s)	1137
EcoRI	GAATTC	2 cut(s)	529, 1106
EcoRV	GATATC	1 cut(s)	1146
EcoT14I	CCWWGG	1 cut(s)	1188
EcoT22I	ATGCAT	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	1188
FaqI	GGGAC	4 cut(s)	185, 486, 625, 1297
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	9 cut(s)	41, 126, 147, 708, 1335, 1397, 1400, 1544, 1663
FokI	GGATG	4 cut(s)	776, 1171, 1375, 1448
Fsp4HI	GCNGC	9 cut(s)	41, 126, 147, 708, 1335, 1397, 1400, 1544, 1663
FspBI	CTAG	6 cut(s)	150, 384, 498, 1125, 1593, 1620
GlaI	GCGC	1 cut(s)	1666
GluI	GCNGC	9 cut(s)	41, 126, 147, 708, 1335, 1397, 1400, 1544, 1663
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	1668
HhaI	GCGC	1 cut(s)	1667
Hin6I	GCGC	1 cut(s)	1665
HinP1I	GCGC	1 cut(s)	1665
HindIII	AAGCTT	3 cut(s)	446, 1348, 1458
HinfI	GANTC	9 cut(s)	153, 163, 237, 375, 473, 831, 1265, 1673, 1725
HphI	GGTGA	3 cut(s)	527, 1549, 1615
Hpy166II	GTNNAC	3 cut(s)	51, 460, 518
Hpy188III	TCNNGA	5 cut(s)	953, 1295, 1414, 1582, 1670
Hpy8I	GTNNAC	3 cut(s)	51, 460, 518
HpyAV	CCTTC	5 cut(s)	588, 845, 1021, 1528, 1603
HpyCH4III	ACNGT	3 cut(s)	699, 949, 1557
HpyCH4IV	ACGT	3 cut(s)	76, 845, 1068
HpyF10VI	GCNNNNNNNGC	7 cut(s)	134, 143, 655, 664, 1121, 1396, 1662
HpyF3I	CTNAG	4 cut(s)	45, 984, 1207, 1240
HpySE526I	ACGT	3 cut(s)	76, 845, 1068
HspAI	GCGC	1 cut(s)	1665
KpnI	GGTACC	1 cut(s)	781
Ksp22I	TGATCA	1 cut(s)	1327
Kzo9I	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
LguI	GCTCTTC	1 cut(s)	605
Lsp1109I	GCAGC	9 cut(s)	27, 112, 133, 719, 1321, 1386, 1408, 1555, 1674
LweI	GCATC	5 cut(s)	199, 719, 1193, 1530, 1665
MaeI	CTAG	6 cut(s)	150, 384, 498, 1125, 1593, 1620
MaeII	ACGT	3 cut(s)	76, 845, 1068
MaeIII	GTNAC	4 cut(s)	719, 886, 1069, 1127
MalI	GATC	7 cut(s)	177, 627, 917, 1095, 1329, 1510, 1580
MboI	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
MfeI	CAATTG	1 cut(s)	1685
MflI	RGATCY	3 cut(s)	175, 625, 1093
MluCI	AATT	9 cut(s)	140, 261, 529, 570, 1020, 1042, 1106, 1442, 1685
MlyI	GAGTC	4 cut(s)	147, 467, 825, 1719
MmeI	TCCRAC	2 cut(s)	1138, 1464
Mph1103I	ATGCAT	1 cut(s)	669
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	5 cut(s)	402, 729, 962, 1358, 1470
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	1399
MunI	CAATTG	1 cut(s)	1685
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	7 cut(s)	134, 143, 655, 664, 1121, 1396, 1662
NcoI	CCATGG	1 cut(s)	1188
NdeII	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
NlaIV	GGNNCC	1 cut(s)	779
NmuCI	GTSAC	2 cut(s)	719, 1127
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	1 cut(s)	872
PagI	TCATGA	1 cut(s)	1669
PciSI	GCTCTTC	1 cut(s)	605
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	5 cut(s)	163, 237, 375, 1265, 1673
PflMI	CCANNNNNTGG	2 cut(s)	511, 1721
PkrI	GCNGC	9 cut(s)	42, 127, 148, 709, 1336, 1398, 1401, 1545, 1664
PleI	GAGTC	4 cut(s)	147, 467, 825, 1719
PpsI	GAGTC	4 cut(s)	147, 467, 825, 1719
Ppu21I	YACGTR	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	962
PsiI	TTATAA	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	779
PstI	CTGCAG	2 cut(s)	902, 996
PsuI	RGATCY	3 cut(s)	175, 625, 1093
PvuII	CAGCTG	1 cut(s)	1399
RsaI	GTAC	5 cut(s)	75, 282, 459, 779, 990
RsaNI	GTAC	5 cut(s)	74, 281, 458, 778, 989
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	5 cut(s)	402, 729, 962, 1358, 1470
SatI	GCNGC	9 cut(s)	41, 126, 147, 708, 1335, 1397, 1400, 1544, 1663
Sau3AI	GATC	7 cut(s)	175, 625, 915, 1093, 1327, 1508, 1578
SchI	GAGTC	4 cut(s)	147, 467, 825, 1719
SfaNI	GCATC	5 cut(s)	199, 719, 1193, 1530, 1665
SfcI	CTRYAG	3 cut(s)	898, 992, 1370
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	4 cut(s)	449, 972, 1317, 1547
SmoI	CTYRAG	4 cut(s)	449, 972, 1317, 1547
Sse9I	AATT	9 cut(s)	140, 261, 529, 570, 1020, 1042, 1106, 1442, 1685
SsiI	CCGC	2 cut(s)	167, 212
SspMI	CTAG	6 cut(s)	150, 384, 498, 1125, 1593, 1620
StyI	CCWWGG	1 cut(s)	1188
TaaI	ACNGT	3 cut(s)	699, 949, 1557
TaiI	ACGT	3 cut(s)	79, 848, 1071
TaqI	TCGA	3 cut(s)	603, 865, 1581
TasI	AATT	9 cut(s)	140, 261, 529, 570, 1020, 1042, 1106, 1442, 1685
TatI	WGTACW	2 cut(s)	280, 457
TfiI	GAWTC	5 cut(s)	163, 237, 375, 1265, 1673
Tru1I	TTAA	5 cut(s)	402, 729, 962, 1358, 1470
Tru9I	TTAA	5 cut(s)	402, 729, 962, 1358, 1470
TscAI	CASTG	2 cut(s)	332, 1562
TseFI	GTSAC	2 cut(s)	719, 1127
TseI	GCWGC	9 cut(s)	40, 125, 146, 707, 1334, 1396, 1399, 1543, 1662
Tsp45I	GTSAC	2 cut(s)	719, 1127
TspDTI	ATGAA	7 cut(s)	267, 582, 689, 837, 1041, 1452, 1652
TspGWI	ACGGA	2 cut(s)	283, 541
TspRI	CASTG	2 cut(s)	332, 1562
Van91I	CCANNNNNTGG	2 cut(s)	511, 1721
VspI	ATTAAT	1 cut(s)	962
XapI	RAATTY	5 cut(s)	140, 261, 529, 570, 1106
XceI	RCATGY	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	6 cut(s)	150, 384, 498, 1125, 1593, 1620
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.