Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009358

Physical Location & Seq

Genomic Coordinates Forward (+)

5794968 .. 5797944

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGTCAGCATCATATGTATCAGATCTTCATATCAACGTTAAGGGTGTTCCATTTCATCTTTGCAAAGAAATGTTAGCAAAGAGATCGTCCAAAGTGAGCTCATTACTCGAGCGAAACGAGATCGATGAGCTGCGTTTGATCCTACGAGATTTAGAAGTCGATCCAGAAACCTTTGAGCTCGTCGCTAGATTCTGTAATGGCTCTGAATTCAAGTTTACATCTGATACCATCGTCTCTGTTCTCTGCATCGCGTATTACTTAGGGATGAATGAAGAACAAAGCTCTAATAACTTGTTAGGCAAGGCATCTGAGTTCTTAGAGCACCGAGTTTTTCCGAGCTGGAGTGAGACAATAAATGCTCTTCGTTCAGGGGACAAGAGTTTTGACAAGCTAGCTGATGTTGGACTTGTTGATGTGTTCTTTGATTCCCTTATCGAAAAAGCTTCCTACGATCCAAGACTCCTTGGTGAACTGATCAAGAACAGAGCAGAAACCGATGATTATAGACCTAACCCTAGGAGAAGATTGTTTGTTATAGATTGGAAATCGGAAGATTTGATCACAATTCCCCTTCGGTTATATGAACCTTTCATGATCCGAGCAATCAAATCCCGCAGCATTCCTGTGGAATACATCGTGTTATCTGTCTGTAAATACGCGAAGAAATGGGTTTTCGATACAGAAGAAAGCCTTTCAGGGCAAAAGAGAGAAGCAATTGAAGTGGTTGAGAGGCTTTTGCCATATCAGAGGGGGCTAATCTCTTGTGAACTCTTATTCGAATCGCTAAAACATTCAATCTGGTTAGAAGCTAGCTCTGAATGTCAAAACGGATTCATGATCAGAATCTGCAAGCAGCTCGACATGGCTAAATCAACTGATCTCAAGATTCTATCCCGAGGTTATGGAGAAAAAGCTGAGGGTTTCGAAAATATTGAGCTCGTTAAGACCGTCGTAAAGAGCTTTTACACTTACTACGCTAATGAAGACTCTGAAACTGTTTCACATTTCGTGAAAGTAGCAAAACTGTCGGAAGAATTTCTGTTCTTGGCTGCAAGTGAGGCTTCTCTGAAGCTCGAGGCTTTTGTGGAGTTAGCGGAGATGACAGTGGCTGTTTCGCAAGGTATTTTGAGCTACTCAGATGGGATTTACAGAGCCATTGATGTATTCTTGGAGAGCCATAGATACTTAACTGAATCAGAGAAGATGGAAGTTTGTAAAGTTCTTGAATGTGGTAAACTCTCTCAGGAAGGATTCGAACGAGCCGCGAAAAACCAGAAGCTTCCTCTTAGAATCGTTGTTAATGTTTTGTGCGTTTCTCAGCTTCAGATACGTGATACAGTGGCTAAAGAGATTAAGGGTATGGAAGAGAAAGTAGATGAAGAAGAAGAAGAAGAAATTGAGGTTTCGAGCGATGAAGATGAGATGGAGAAGATGAGTAATAAGTTATTAGGACTTGAGATTGAGAATGATGAATGTGTTGTTCATCGTCGGAAGAATATGAAGAAGAAGAAGAAGAAGATAAGTGTGTGGGGGCAAGTGAAGAGGAAGTTTGGTTGCTTGAATTCTTCTTCTTCTTCTTATTCAGTTGATGCTTGCACCTGTGATGTCAAGAAGAAGAAGAAGAAGATTCATCATCACTACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

548

Amino Acids

62.93

Weight (kDa)

5.61

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	19 - 106	6.5e-06	BTB/POZ domain
NPH3	PF03000	195 - 431	1.3e-56	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03510 AT5G17580 AT5G17580
fragaria_vesca	FvH4_7g07100
malus_domestica	MD02G1239800.v1.1 MD02G1239900.v1.1 MD07G1076800.v1.1
prunus_persica	Prupe.2G097900_v2.0.a1 Prupe.2G097900_v2.0.a1
pyrus_communis	pycom07g06040
rosa_chinensis	RchiOBHm_Chr1g0337041
rosa_laevigata	RLG00000029309
rosa_multiflora	Rmu_co8265129.1_g000001 Rmu_sc0009742.1_g000014
rosa_roxburghii	Rroxscaffold_4G00315000
rosa_rugosa	Rorug01G0130800
rosa_samantha	Rh1AG151400 Rh1BG120400 Rh1CG142600 Rh1CG250700 Rh1DG158600
rosa_wichuraiana	Rw1G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	251, 659, 1265
AciI	CCGC	3 cut(s)	613, 1094, 1263
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	4 cut(s)	133, 155, 446, 589
AcsI	RAATTY	3 cut(s)	206, 1034, 1561
AcuI	CTGAAG	2 cut(s)	1088, 1307
AgsI	TTSAA	5 cut(s)	211, 719, 795, 1226, 1561
Alw21I	GWGCWC	4 cut(s)	101, 180, 324, 939
Alw26I	GTCTC	2 cut(s)	238, 341
AlwI	GGATC	4 cut(s)	133, 155, 446, 589
AlwNI	CAGNNNCTG	2 cut(s)	846, 1109
Ama87I	CYCGRG	3 cut(s)	107, 894, 1073
ApeKI	GCWGC	4 cut(s)	130, 615, 853, 1049
ApoI	RAATTY	3 cut(s)	206, 1034, 1561
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 103, 365, 397
Asp700I	GAANNNNTTC	1 cut(s)	1035
AspA2I	CCTAGG	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	479
AsuII	TTCGAA	3 cut(s)	777, 924, 1254
AsuNHI	GCTAGC	2 cut(s)	391, 809
AvaI	CYCGRG	3 cut(s)	107, 894, 1073
AvrII	CCTAGG	1 cut(s)	515
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BanII	GRGCYC	3 cut(s)	101, 180, 939
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	4 cut(s)	101, 180, 324, 939
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	4 cut(s)	117, 627, 865, 1036
BccI	CCATC	4 cut(s)	236, 1133, 1198, 1417
BcgI	CGANNNNNNTGC	6 cut(s)	66, 100, 838, 872, 1008, 1042
BclI	TGATCA	3 cut(s)	474, 558, 837
BcoDI	GTCTC	2 cut(s)	238, 341
BfaI	CTAG	4 cut(s)	186, 392, 516, 810
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	5 cut(s)	131, 616, 854, 1050, 1263
BlnI	CCTAGG	1 cut(s)	515
BlsI	GCNGC	5 cut(s)	132, 617, 855, 1051, 1264
BmeT110I	CYCGRG	3 cut(s)	107, 894, 1073
BmsI	GCATC	4 cut(s)	17, 255, 314, 1579
BmtI	GCTAGC	2 cut(s)	395, 813
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	915
Bpu14I	TTCGAA	3 cut(s)	777, 924, 1254
BpuEI	CTTGAG	2 cut(s)	866, 1475
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	1331
BsaBI	GATNNNNATC	1 cut(s)	842
BsaJI	CCNNGG	3 cut(s)	463, 515, 895
Bse8I	GATNNNNATC	1 cut(s)	842
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	463, 515, 895
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	842
BseMII	CTCAG	5 cut(s)	300, 906, 1149, 1256, 1331
BseXI	GCAGC	4 cut(s)	117, 627, 865, 1036
Bsh1236I	CGCG	3 cut(s)	251, 659, 1265
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	4 cut(s)	101, 180, 324, 939
BsiHKCI	CYCGRG	3 cut(s)	107, 894, 1073
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	238, 341
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	618
BsoBI	CYCGRG	3 cut(s)	107, 894, 1073
Bsp119I	TTCGAA	3 cut(s)	777, 924, 1254
Bsp1286I	GDGCHC	4 cut(s)	101, 180, 324, 939
BspACI	CCGC	3 cut(s)	613, 1094, 1263
BspCNI	CTCAG	5 cut(s)	301, 907, 1148, 1255, 1330
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	3 cut(s)	251, 659, 1265
BspHI	TCATGA	2 cut(s)	591, 834
BspOI	GCTAGC	2 cut(s)	395, 813
BspPI	GGATC	4 cut(s)	133, 155, 446, 589
BspQI	GCTCTTC	1 cut(s)	366
BspT104I	TTCGAA	3 cut(s)	777, 924, 1254
BssECI	CCNNGG	3 cut(s)	463, 515, 895
BssT1I	CCWWGG	2 cut(s)	463, 515
Bst4CI	ACNGT	5 cut(s)	949, 997, 1026, 1105, 1339
Bst6I	CTCTTC	3 cut(s)	366, 1359, 1535
BstBAI	YACGTR	1 cut(s)	1331
BstBI	TTCGAA	3 cut(s)	777, 924, 1254
BstC8I	GCNNGC	4 cut(s)	393, 811, 851, 1594
BstDEI	CTNAG	8 cut(s)	259, 309, 316, 915, 1135, 1242, 1286, 1317
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	3 cut(s)	251, 659, 1265
BstMAI	GTCTC	2 cut(s)	238, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	1058
BstUI	CGCG	3 cut(s)	251, 659, 1265
BstV1I	GCAGC	4 cut(s)	117, 627, 865, 1036
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	2 cut(s)	232, 1425
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	1110, 1344
Cac8I	GCNNGC	4 cut(s)	393, 811, 851, 1594
CaiI	CAGNNNCTG	2 cut(s)	846, 1109
CciI	TCATGA	2 cut(s)	591, 834
ClaI	ATCGAT	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	3 cut(s)	592, 835, 862
DdeI	CTNAG	8 cut(s)	259, 309, 316, 915, 1135, 1242, 1286, 1317
Eam1104I	CTCTTC	3 cut(s)	366, 1359, 1535
EarI	CTCTTC	3 cut(s)	366, 1359, 1535
Ecl136II	GAGCTC	3 cut(s)	99, 178, 937
Eco130I	CCWWGG	2 cut(s)	463, 515
Eco24I	GRGCYC	3 cut(s)	101, 180, 939
Eco53kI	GAGCTC	3 cut(s)	99, 178, 937
Eco57I	CTGAAG	2 cut(s)	1088, 1307
Eco88I	CYCGRG	3 cut(s)	107, 894, 1073
EcoICRI	GAGCTC	3 cut(s)	99, 178, 937
EcoRI	GAATTC	2 cut(s)	206, 1561
EcoT14I	CCWWGG	2 cut(s)	463, 515
EcoT38I	GRGCYC	3 cut(s)	101, 180, 939
ErhI	CCWWGG	2 cut(s)	463, 515
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	595, 838, 865
FalI	AAGNNNNNCTT	4 cut(s)	675, 707, 1045, 1077
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	3 cut(s)	591, 834, 861
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	13
FbaI	TGATCA	3 cut(s)	474, 558, 837
Fnu4HI	GCNGC	5 cut(s)	131, 616, 854, 1050, 1263
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	3 cut(s)	101, 180, 939
Fsp4HI	GCNGC	5 cut(s)	131, 616, 854, 1050, 1263
FspBI	CTAG	4 cut(s)	186, 392, 516, 810
GluI	GCNGC	5 cut(s)	131, 616, 854, 1050, 1263
GsuI	CTGGAG	1 cut(s)	361
Hin1II	CATG	3 cut(s)	595, 838, 865
HindIII	AAGCTT	2 cut(s)	441, 1277
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	4 cut(s)	216, 470, 767, 1235
Hpy8I	GTNNAC	4 cut(s)	216, 470, 767, 1235
Hpy99I	CGWCG	3 cut(s)	185, 953, 1491
HpyAV	CCTTC	2 cut(s)	581, 1241
HpyCH4III	ACNGT	5 cut(s)	949, 997, 1026, 1105, 1339
HpyCH4IV	ACGT	2 cut(s)	36, 1330
HpyCH4V	TGCA	5 cut(s)	63, 246, 849, 1052, 1596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1058
HpyF3I	CTNAG	8 cut(s)	259, 309, 316, 915, 1135, 1242, 1286, 1317
HpySE526I	ACGT	2 cut(s)	36, 1330
Hsp92II	CATG	3 cut(s)	595, 838, 865
Ksp22I	TGATCA	3 cut(s)	474, 558, 837
LguI	GCTCTTC	1 cut(s)	366
LpnPI	CCDG	9 cut(s)	177, 325, 354, 636, 681, 784, 1229, 1286, 1612
Lsp1109I	GCAGC	4 cut(s)	117, 627, 865, 1036
LweI	GCATC	4 cut(s)	17, 255, 314, 1579
MaeI	CTAG	4 cut(s)	186, 392, 516, 810
MaeII	ACGT	2 cut(s)	36, 1330
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	4 cut(s)	101, 180, 324, 939
MluCI	AATT	6 cut(s)	206, 564, 714, 1034, 1395, 1561
MlyI	GAGTC	2 cut(s)	453, 980
MmeI	TCCRAC	3 cut(s)	382, 1008, 1469
MnlI	CCTC	9 cut(s)	723, 741, 890, 910, 1051, 1069, 1293, 1393, 1536
MroXI	GAANNNNTTC	1 cut(s)	1035
MseI	TTAA	5 cut(s)	39, 942, 1187, 1299, 1353
MslI	CAYNNNNRTG	1 cut(s)	623
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	618
MvnI	CGCG	3 cut(s)	251, 659, 1265
MwoI	GCNNNNNNNGC	1 cut(s)	1058
NdeI	CATATG	1 cut(s)	13
NheI	GCTAGC	2 cut(s)	391, 809
NlaIII	CATG	3 cut(s)	595, 838, 865
NspV	TTCGAA	3 cut(s)	777, 924, 1254
PaeR7I	CTCGAG	2 cut(s)	107, 1073
PagI	TCATGA	2 cut(s)	591, 834
PciSI	GCTCTTC	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 945
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	1035
PkrI	GCNGC	5 cut(s)	132, 617, 855, 1051, 1264
PleI	GAGTC	2 cut(s)	453, 980
PpsI	GAGTC	2 cut(s)	453, 980
Ppu21I	YACGTR	1 cut(s)	1331
Psp124BI	GAGCTC	3 cut(s)	101, 180, 939
Psp1406I	AACGTT	1 cut(s)	36
PspXI	VCTCGAGB	2 cut(s)	107, 1073
PstNI	CAGNNNCTG	2 cut(s)	846, 1109
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	623
SacI	GAGCTC	3 cut(s)	101, 180, 939
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	5 cut(s)	39, 942, 1187, 1299, 1353
SatI	GCNGC	5 cut(s)	131, 616, 854, 1050, 1263
SchI	GAGTC	2 cut(s)	453, 980
SduI	GDGCHC	4 cut(s)	101, 180, 324, 939
SfaNI	GCATC	4 cut(s)	17, 255, 314, 1579
Sfr274I	CTCGAG	2 cut(s)	107, 1073
SfuI	TTCGAA	3 cut(s)	777, 924, 1254
SlaI	CTCGAG	2 cut(s)	107, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	4 cut(s)	107, 881, 1073, 1454
SmoI	CTYRAG	4 cut(s)	107, 881, 1073, 1454
Sse9I	AATT	6 cut(s)	206, 564, 714, 1034, 1395, 1561
SsiI	CCGC	3 cut(s)	613, 1094, 1263
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	4 cut(s)	186, 392, 516, 810
SstI	GAGCTC	3 cut(s)	101, 180, 939
StyI	CCWWGG	2 cut(s)	463, 515
TaaI	ACNGT	5 cut(s)	949, 997, 1026, 1105, 1339
TaiI	ACGT	2 cut(s)	39, 1333
TasI	AATT	6 cut(s)	206, 564, 714, 1034, 1395, 1561
TauI	GCSGC	1 cut(s)	1265
Tru1I	TTAA	5 cut(s)	39, 942, 1187, 1299, 1353
Tru9I	TTAA	5 cut(s)	39, 942, 1187, 1299, 1353
TscAI	CASTG	2 cut(s)	1110, 1344
TseI	GCWGC	4 cut(s)	130, 615, 853, 1049
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	2 cut(s)	1110, 1344
XapI	RAATTY	3 cut(s)	206, 1034, 1561
XhoI	CTCGAG	2 cut(s)	107, 1073
XmaJI	CCTAGG	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	1035
XspI	CTAG	4 cut(s)	186, 392, 516, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.