RLG00000029309

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009358
Physical Location & Seq
Reverse (-)
36348855 .. 36350824
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029309

Sequence Viewer

Length: 1722 bp
ATGGAGAAGAGACGCAGCAAAGATACATCATCATTATGGTTGCCCAAGTCTACATCGGATATGCAACTAAATGTACTTGGTGGTCAGCCATTCACTATGGACAAAGAGCTTCTGGCTACAAAATCAGCCAAATTTGCTGCTACACTCAACGAGAATCCGCAGGAAGATCTTGCTAACTTCCTCCGAAGTGTCCCTGCTACTGCAGACACTCTTGAGCTTGTTGCGAGATTCTATCATGGCTTTGAAATTCAAATTTGCAGTCAGAATGTTGTACAGCTCATTTGCGTTGCTGACTACTTGGACATGACTGAAAACCACAGCAAAGATAATTTATTACACAAAGCTATTTCATATTTTCAACAAAGAATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTCCAATCCACAGAAAAGGTATTTCAACAATCCTGGAAGCTTGGATTAGTACACGAATGTTTGGATTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGCGAACCAATCAAGAATTCTACTGCAAATGCTGATGATAGTGACGAGGATTATGAAGGTAATAAGCCAAATGCAAGGAGAAGGCTCTTCGATCTCAATTGGAAACCAGAGGATCTAACAACATTGTCCCTCCAGCTTTATGAGCTCCTCATGCATGCAATGAATAAGCATGGAGTTCCATCAGAATATGTGGCTGCATCTCTTTGTAACTACACTAAGAAATGGGTTTTCTCTAGCAGTGGAGAGGAAGCACTCAAGAAAAAGTACCGAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCTGATGAAATAGGACTCCTTCCATGCACGTTGTTGTTTCAAATGCTTCGAGTTGCTATTTATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAATTGGAAAACAACTTGACCAGGCAACAGTCAAAGACCTCTTAATACCATCTCACGGTTATTCTAAAGTAGTGCAATATGATATTCAATGTGTGAGAAGGATTGTGAAGGTTTTCTATGCTAATTACTCTTCGTCAAATGAAACTGACATAACTGGTCTAATAGCAGTGGCAGATCTCATTGAAGAATTCTTAGCTGAAGTTTCTAGTGACATAGACTTGAAGATATCTACATTTGTCGGATTAGCTGAGATGTTGGTTTCAGCATCCATGGGAGTAAAAACAAACTCGGATGGAATATACAGGGCTGTTGCTATATACTTAGATAAGCACAGGCACTTGACAGAATCCGAGAGAGAAGAAGTGTGTCAGGTGTTGGATTTCCAAAAGATGTCCCCCCAAGCTTGTGATCATGCAGCCAAAAACGAATGCATGCCATTAAGGATGGTGGTACAGGTGTTGTTTGCAGGGCAATTGCAGCTTAGAGACACGATCACGAAGGAGGTGCAGAGTTCGGATGAGAAATTAATAAAAAAAGAAGCAGACGAGGTGAATGCACCAAGGGTGGATTTGTGCGAGGGGAAAATGAGATCTGAGGTGGAGAAAATGAGCAAAAAGGTGATGCAGCTTGAGAGAGAGTGCAGTGTGATGAGAAAAGAGATTGAGAATAGCTCTAGCCTTGTGGTGAGGAAGGAAAAACCTAGCTTGTGGAGAGAAATGAAGAGAAAGTTTGGTTGCATCAGCAGCGCTCATGATTCCAACCGCCAATTGAAGAAGAAAAAGTTGCCTCTGAAACCAAAACGTGGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

574

Amino Acids

65.18

Weight (kDa)

7.5

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 201 - 439 8e-70 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 502, 1712
AccI GTMKAC 1 cut(s) 50
AciI CCGC 2 cut(s) 158, 1672
AclWI GGATC 1 cut(s) 624
AcsI RAATTY 5 cut(s) 131, 246, 252, 520, 1097
AcuI CTGAAG 1 cut(s) 1128
AfaI GTAC 5 cut(s) 75, 273, 450, 770, 1362
AfeI AGCGCT 1 cut(s) 1657
AfiI CCNNNNNNNGG 3 cut(s) 502, 965, 1712
AjnI CCWGG 2 cut(s) 431, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 2 cut(s) 4, 1389
AlwI GGATC 1 cut(s) 624
Aor51HI AGCGCT 1 cut(s) 1657
ApeKI GCWGC 7 cut(s) 15, 137, 698, 1325, 1387, 1534, 1653
ApoI RAATTY 5 cut(s) 131, 246, 252, 520, 1097
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AseI ATTAAT 1 cut(s) 1436
Asp700I GAANNNNTTC 1 cut(s) 1022
AspLEI GCGC 1 cut(s) 1658
AsuHPI GGTGA 3 cut(s) 1471, 1540, 1606
BaeI ACNNNNGTAYC 2 cut(s) 1352, 1385
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 7 cut(s) 27, 124, 685, 1337, 1399, 1546, 1665
BccI CCATC 4 cut(s) 691, 967, 1196, 1348
BcgI CGANNNNNNTGC 4 cut(s) 1396, 1430, 1445, 1479
BciT130I CCWGG 2 cut(s) 433, 932
BclI TGATCA 1 cut(s) 1318
BcoDI GTCTC 2 cut(s) 4, 1389
BfaI CTAG 6 cut(s) 375, 489, 738, 1116, 1584, 1611
BfmI CTRYAG 2 cut(s) 201, 889
BfoI RGCGCY 1 cut(s) 1659
BglII AGATCT 3 cut(s) 166, 1084, 1499
BisI GCNGC 7 cut(s) 16, 138, 699, 1326, 1388, 1535, 1654
BlsI GCNGC 7 cut(s) 17, 139, 700, 1327, 1389, 1536, 1655
Bme1390I CCNGG 2 cut(s) 433, 932
BmrFI CCNGG 2 cut(s) 433, 932
BmsI GCATC 4 cut(s) 710, 1184, 1521, 1656
BplI GAGNNNNNCTC 2 cut(s) 1565, 1597
BpmI CTGGAG 1 cut(s) 620
BpuEI CTTGAG 3 cut(s) 233, 743, 1559
BsaBI GATNNNNATC 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 1179, 1469
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 965, 1712
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 905
BseBI CCWGG 2 cut(s) 433, 932
BseDI CCNNGG 2 cut(s) 1179, 1469
BseGI GGATG 5 cut(s) 780, 1175, 1207, 1359, 1432
BseJI GATNNNNATC 1 cut(s) 905
BseLI CCNNNNNNNGG 3 cut(s) 502, 965, 1712
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 2 cut(s) 1149, 1494
BseNI ACTGG 1 cut(s) 1069
BseRI GAGGAG 1 cut(s) 641
BseXI GCAGC 7 cut(s) 27, 124, 685, 1337, 1399, 1546, 1665
BsgI GTGCAG 2 cut(s) 1436, 1570
BsiHKAI GWGCWC 1 cut(s) 651
BslFI GGGAC 4 cut(s) 176, 477, 616, 1288
BslI CCNNNNNNNGG 3 cut(s) 502, 965, 1712
BsmAI GTCTC 2 cut(s) 4, 1389
BsmBI CGTCTC 1 cut(s) 4
BsmFI GGGAC 4 cut(s) 176, 477, 616, 1288
BsmI GAATGC 2 cut(s) 1343, 1468
Bsp1286I GDGCHC 1 cut(s) 651
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 2 cut(s) 158, 1672
BspCNI CTCAG 2 cut(s) 1150, 1495
BspHI TCATGA 1 cut(s) 1660
BspMAI CTGCAG 2 cut(s) 205, 893
BspPI GGATC 1 cut(s) 624
BspQI GCTCTTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 669
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 2 cut(s) 1179, 1469
BssMI GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
BssT1I CCWWGG 2 cut(s) 1179, 1469
Bst2UI CCWGG 2 cut(s) 433, 932
Bst4CI ACNGT 3 cut(s) 940, 968, 1719
Bst6I CTCTTC 4 cut(s) 2, 596, 1045, 1625
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 660, 1343
BstDEI CTNAG 6 cut(s) 720, 1102, 1158, 1231, 1391, 1503
BstDSI CCRYGG 1 cut(s) 1179
BstF5I GGATG 5 cut(s) 780, 1175, 1207, 1359, 1432
BstH2I RGCGCY 1 cut(s) 1659
BstHHI GCGC 1 cut(s) 1658
BstKTI GATC 8 cut(s) 169, 598, 619, 909, 1087, 1321, 1404, 1502
BstMAI GTCTC 2 cut(s) 4, 1389
BstMBI GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
BstMWI GCNNNNNNNGC 5 cut(s) 134, 646, 655, 1387, 1653
BstNI CCWGG 2 cut(s) 433, 932
BstNSI RCATGY 2 cut(s) 662, 1345
BstSCI CCNGG 2 cut(s) 431, 930
BstSFI CTRYAG 2 cut(s) 201, 889
BstV1I GCAGC 7 cut(s) 27, 124, 685, 1337, 1399, 1546, 1665
BstX2I RGATCY 4 cut(s) 166, 616, 1084, 1499
BstYI RGATCY 4 cut(s) 166, 616, 1084, 1499
BtgI CCRYGG 1 cut(s) 1179
BtsCI GGATG 5 cut(s) 780, 1175, 1207, 1359, 1432
BtsI GCAGTG 3 cut(s) 748, 1083, 1558
BtsIMutI CAGTG 3 cut(s) 748, 1083, 1558
Cac8I GCNNGC 2 cut(s) 660, 1343
CciI TCATGA 1 cut(s) 1660
CfoI GCGC 1 cut(s) 1658
CseI GACGC 1 cut(s) 21
Csp6I GTAC 5 cut(s) 74, 272, 449, 769, 1361
CviQI GTAC 5 cut(s) 74, 272, 449, 769, 1361
DdeI CTNAG 6 cut(s) 720, 1102, 1158, 1231, 1391, 1503
DpnI GATC 8 cut(s) 168, 597, 618, 908, 1086, 1320, 1403, 1501
DpnII GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
Eam1104I CTCTTC 4 cut(s) 2, 596, 1045, 1625
EarI CTCTTC 4 cut(s) 2, 596, 1045, 1625
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 1179, 1469
Eco24I GRGCYC 1 cut(s) 651
Eco32I GATATC 1 cut(s) 1137
Eco47III AGCGCT 1 cut(s) 1657
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 1128
EcoICRI GAGCTC 1 cut(s) 649
EcoRI GAATTC 2 cut(s) 520, 1097
EcoRII CCWGG 2 cut(s) 431, 930
EcoRV GATATC 1 cut(s) 1137
EcoT14I CCWWGG 2 cut(s) 1179, 1469
EcoT22I ATGCAT 2 cut(s) 660, 1343
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 1179, 1469
Esp3I CGTCTC 1 cut(s) 4
FaqI GGGAC 4 cut(s) 176, 477, 616, 1288
FbaI TGATCA 1 cut(s) 1318
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 7 cut(s) 16, 138, 699, 1326, 1388, 1535, 1654
FokI GGATG 5 cut(s) 767, 1162, 1214, 1366, 1439
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 7 cut(s) 16, 138, 699, 1326, 1388, 1535, 1654
FspBI CTAG 6 cut(s) 375, 489, 738, 1116, 1584, 1611
GlaI GCGC 1 cut(s) 1657
GluI GCNGC 7 cut(s) 16, 138, 699, 1326, 1388, 1535, 1654
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 1659
HgaI GACGC 1 cut(s) 21
HhaI GCGC 1 cut(s) 1658
Hin6I GCGC 1 cut(s) 1656
HinP1I GCGC 1 cut(s) 1656
HindIII AAGCTT 2 cut(s) 437, 1311
HinfI GANTC 7 cut(s) 154, 228, 366, 464, 822, 1256, 1664
HphI GGTGA 3 cut(s) 1471, 1540, 1606
Hpy166II GTNNAC 3 cut(s) 51, 451, 1715
Hpy188III TCNNGA 5 cut(s) 212, 517, 760, 1405, 1661
Hpy8I GTNNAC 3 cut(s) 51, 451, 1715
HpyAV CCTTC 7 cut(s) 554, 579, 836, 1002, 1012, 1402, 1594
HpyCH4III ACNGT 3 cut(s) 940, 968, 1719
HpyCH4IV ACGT 2 cut(s) 836, 1711
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 646, 655, 1387, 1653
HpyF3I CTNAG 6 cut(s) 720, 1102, 1158, 1231, 1391, 1503
HpySE526I ACGT 2 cut(s) 836, 1711
HspAI GCGC 1 cut(s) 1656
Ksp22I TGATCA 1 cut(s) 1318
Kzo9I GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
LguI GCTCTTC 1 cut(s) 596
LmnI GCTCC 1 cut(s) 654
Lsp1109I GCAGC 7 cut(s) 27, 124, 685, 1337, 1399, 1546, 1665
LweI GCATC 4 cut(s) 710, 1184, 1521, 1656
MaeI CTAG 6 cut(s) 375, 489, 738, 1116, 1584, 1611
MaeII ACGT 2 cut(s) 836, 1711
MaeIII GTNAC 4 cut(s) 545, 710, 877, 1118
MalI GATC 8 cut(s) 168, 597, 618, 908, 1086, 1320, 1403, 1501
MboI GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
MfeI CAATTG 3 cut(s) 601, 1382, 1676
MflI RGATCY 4 cut(s) 166, 616, 1084, 1499
MhlI GDGCHC 1 cut(s) 651
MlyI GAGTC 1 cut(s) 816
MmeI TCCRAC 3 cut(s) 1129, 1266, 1692
Mph1103I ATGCAT 2 cut(s) 660, 1343
MroXI GAANNNNTTC 1 cut(s) 1022
MseI TTAA 4 cut(s) 393, 953, 1349, 1436
MslI CAYNNNNRTG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 433, 932
MunI CAATTG 3 cut(s) 601, 1382, 1676
Mva1269I GAATGC 2 cut(s) 1343, 1468
MvaI CCWGG 2 cut(s) 433, 932
MwoI GCNNNNNNNGC 5 cut(s) 134, 646, 655, 1387, 1653
NcoI CCATGG 1 cut(s) 1179
NdeII GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
NmuCI GTSAC 2 cut(s) 545, 1118
NsiI ATGCAT 2 cut(s) 660, 1343
NspI RCATGY 2 cut(s) 662, 1345
PaeI GCATGC 2 cut(s) 662, 1345
PagI TCATGA 1 cut(s) 1660
PciSI GCTCTTC 1 cut(s) 596
PctI GAATGC 2 cut(s) 1343, 1468
PdmI GAANNNNTTC 1 cut(s) 1022
PfeI GAWTC 6 cut(s) 154, 228, 366, 464, 1256, 1664
PflMI CCANNNNNTGG 2 cut(s) 502, 1712
PfoI TCCNGGA 1 cut(s) 431
PkrI GCNGC 7 cut(s) 17, 139, 700, 1327, 1389, 1536, 1655
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
PshBI ATTAAT 1 cut(s) 1436
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 431, 930
PspGI CCWGG 2 cut(s) 431, 930
PstI CTGCAG 2 cut(s) 205, 893
PsuI RGATCY 4 cut(s) 166, 616, 1084, 1499
RsaI GTAC 5 cut(s) 75, 273, 450, 770, 1362
RsaNI GTAC 5 cut(s) 74, 272, 449, 769, 1361
RseI CAYNNNNRTG 1 cut(s) 34
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 596
SaqAI TTAA 4 cut(s) 393, 953, 1349, 1436
SatI GCNGC 7 cut(s) 16, 138, 699, 1326, 1388, 1535, 1654
Sau3AI GATC 8 cut(s) 166, 595, 616, 906, 1084, 1318, 1401, 1499
SchI GAGTC 1 cut(s) 816
ScrFI CCNGG 2 cut(s) 433, 932
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 4 cut(s) 710, 1184, 1521, 1656
SfcI CTRYAG 2 cut(s) 201, 889
SmiMI CAYNNNNRTG 1 cut(s) 34
SmlI CTYRAG 3 cut(s) 212, 758, 1538
SmoI CTYRAG 3 cut(s) 212, 758, 1538
SphI GCATGC 2 cut(s) 662, 1345
SsiI CCGC 2 cut(s) 158, 1672
SspMI CTAG 6 cut(s) 375, 489, 738, 1116, 1584, 1611
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 431, 930
StyI CCWWGG 2 cut(s) 1179, 1469
TaaI ACNGT 3 cut(s) 940, 968, 1719
TaiI ACGT 2 cut(s) 839, 1714
TaqI TCGA 2 cut(s) 594, 856
TatI WGTACW 3 cut(s) 73, 271, 448
TfiI GAWTC 6 cut(s) 154, 228, 366, 464, 1256, 1664
Tru1I TTAA 4 cut(s) 393, 953, 1349, 1436
Tru9I TTAA 4 cut(s) 393, 953, 1349, 1436
TscAI CASTG 3 cut(s) 748, 1083, 1558
TseFI GTSAC 2 cut(s) 545, 1118
TseI GCWGC 7 cut(s) 15, 137, 698, 1325, 1387, 1534, 1653
Tsp45I GTSAC 2 cut(s) 545, 1118
TspDTI ATGAA 6 cut(s) 339, 573, 680, 828, 1065, 1643
TspRI CASTG 3 cut(s) 748, 1083, 1558
Van91I CCANNNNNTGG 2 cut(s) 502, 1712
VspI ATTAAT 1 cut(s) 1436
XapI RAATTY 5 cut(s) 131, 246, 252, 520, 1097
XceI RCATGY 2 cut(s) 662, 1345
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 1022
XspI CTAG 6 cut(s) 375, 489, 738, 1116, 1584, 1611
Zsp2I ATGCAT 2 cut(s) 660, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.